Taxonomy and DNA phylogeny of Diatrypaceae associated with Vitis vinifera and other woody plants in Australia

Fungal Diversity

Volumn 49, Issue , 2011, Pages 203-223

  Trouillas, Florent P ^a   Pitt, Wayne M ^b   Sosnowski, Mark R ^c   Huang, Rujuan ^b   Peduto, Francesca ^a   Loschiavo, Adrian ^d   Savocchia, Sandra ^b   Scott, Eileen S ^e   Gubler, Walter D ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b CHARLES STURT UNIVERSITY   (Australia)

^c SOUTH AUSTRALIAN RESEARCH AND DEVELOPMENT INSTITUTE   (Australia)

^d Scholefield Robinson Horticultural Services   (Australia)

^e UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

Cryptovalsa; Diatrypaceae; Diatrypella; Eutypa dieback; Eutypella

Indexed keywords

CRYPTOSPHAERIA; CRYPTOVALSA; CRYPTOVALSA AMPELINA; DIATRYPACEAE; DIATRYPE; DIATRYPELLA; EUTYPA DIEBACK; EUTYPA LATA; EUTYPELLA; FUNGI; UNCINOCARPUS; VITACEAE; VITIS; VITIS VINIFERA;

EID: 80051705692     PISSN: 15602745     EISSN: 18789129     Source Type: Journal    
DOI: 10.1007/s13225-011-0094-0     Document Type: Article

References (57)

1. FJ Acero V González J Sánchez-Ballesteros V Rubio J Checa GF Bills O Salazar G Platas F Peláez 2004 Molecular phylogenetic studies on the Diatrypaceae based on rDNA-ITS sequences Mycologia 96 249 259 21148852 10.2307/3762061 1:CAS:528:DC%2BD2cXkslOnu7Y%3D (Pubitemid 38600743)
2. Berlese AN (1900) Icones Fungorum. Vol. 3. Sphaeriaceae: Allantosporae p. p. Patavii, 120 p., 162 pls
3. CC Carmarán AI Romero LM Giussani 2006 An approach towards a new phylogenetic classification in Diatrypaceae Fungal Divers 23 67 87 (Pubitemid 46155109)
4. CC Carmarán MB Pildain LN Vasilyeva 2009 The family Diatrypaceae (Ascomycota) in Argentina: new species and new records Nova Hedwig 88 521 530 10.1127/0029-5035/2009/0088-0521
5. MV Carter 1957 Eutypa armeniacae Hansf. & Carter, sp. nov., an airborne vascular pathogen of Prunus armeniaca L. in Southern Australia Aust J Bot 5 21 35 10.1071/BT9570021
6. Carter MV (1991) The status of Eutypa lata as a pathogen. Monograph, Phytopathological Paper No 32. Commonwealth Agricultural Bureau, International Mycological Institute, UK
7. MV Carter A Bolay F Rappaz 1983 An annotated list and bibliography of Eutypa armeniacae Rev Plant Pathol 62 251 258
8. M Catal SA Jordan SC Butterworth AMC Shilder 2007 Detection of Eutypa lata and Eutypella vitis in grapevine by nested multiplex polymerase chain reaction Phytopathology 97 737 747 18943605 10.1094/PHYTO-97-6-0737 1:CAS:528:DC%2BD2sXmsF2hsL4%3D (Pubitemid 46849455)
9. Cooke MC (1892) Handbook of Australian fungi. Williams and Norgate, London, p 457
10. RW Davidson RC Lorenz 1938 Species of Eutypella and Schizoxylon associated with cankers of maple Phytopathology 28 733 745
11. Ellis JB, Everhart BM (1892) The North American Pyrenomycetes. Newfield, New Jersey, 793 pp
12. NL Glass GC Donaldson 1995 Development of primer set designed for use with the PCR to amplify conserved genes from filamentous ascomycetes Appl Environ Microbiol 61 1323 1330 7747954 1:CAS:528:DyaK2MXksl2lsrY%3D
13. DA Glawe JD Rogers 1984 Diatrypaceae in the Pacific Northwest Mycotaxon 20 401 460
14. TA Hall 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acids Symp Ser 41 95 98 1:CAS:528:DC%2BD3cXhtVyjs7Y%3D
15. TA Heath SM Hedtke DM Hillis 2008 Taxon sampling and the accuracy of phylogenetic analyses J Syst Evol 46 239 251
16. A Highet T Wicks 1998 The incidence of Eutypa dieback in South Australian vineyards. Annual Technical Issue - 1998 The Australian Grape Grower and Winemaker 414 135 136
17. TE Hinds 1981 Cryptosphaeria canker and Libertella decay of aspen Phytopathology 71 1137 1145 10.1094/Phyto-71-1137
18. TE Hinds TH Laurent 1978 Common aspen diseases found in Alaska Plant Dis Rep 62 972 975
19. KD Hyde 1993 Cryptovalsa halosarceicola sp. nov. an intertidal saprotroph of Halosarceia halocnemoides Mycol Res 97 799 800 10.1016/S0953-7562(09)81153-2
20. KD Hyde 1995 Eutypella naqsii sp. nov. from intertidal Avicennia Mycol Res 99 1462 1464 10.1016/S0953-7562(09)80793-4 (Pubitemid 3010020)
21. KD Hyde F Rappaz 1993 Eutypa bathurstensis sp. nov. from intertidal Avicennia Mycol Res 97 861 864 10.1016/S0953-7562(09)81163-5
22. D Jurc N Ogris B Slippers J Stenlid 2006 First report of Eutypella canker of Acer pseudoplatanus in Europe Plant Pathol 55 577 10.1111/j.1365-3059.2006. 01426.x (Pubitemid 44091591)
23. Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Dictionary of the fungi, 10th edn. CAB International, Wallingford
24. R Lardner BE Stummer MR Sosnowski ES Scott 2005 Molecular identification and detection of Eutypa lata in grapevine Mycol Res 109 799 808 16121566 10.1017/S0953756205002893 1:CAS:528:DC%2BD2MXmtVektL0%3D (Pubitemid 41128921)
25. WJ Moller AN Kasimatis 1978 Dieback of grapevine caused by Eutypa armeniacae Plant Dis Rep 62 254 258
26. L Mostert F Halleen ML Creaser PW Crous 2004 Cryptovalsa ampelina, a forgotten shoot and cane pathogen of grapevines Australas Plant Path 33 295 299 10.1071/AP03095 (Pubitemid 38946141)
27. GP Munkvold JJ Marois 1994 Eutypa dieback of sweet cherry and occurrence of Eutypa lata perithecia in the central valley of California Plant Dis 78 200 207 10.1094/PD-78-0200 (Pubitemid 2057674)
28. Nitschke T (1867) Pyrenomycetes germanici. Breslau
29. MB Pildain MV Novas CC Carmarán 2005 Evaluation of anamorphic state, wood decay and production of lignin-modifying enzymes for diatrypaceous fungi from Argentina J Agric Technol 1 81 96
30. WM Pitt R Huang FP Trouillas S Savocchia CC Steel 2010 Evidence that Eutypa lata and other diatrypaceous species occur in New South Wales vineyards Australas Plant Pathol 39 97 106 10.1071/AP09051
31. DD Pollock DJ Zwickl JA McGuire DM Hillis 2002 Increased taxon sampling is advantageous for phylogenetic inference Syst Biol 51 664 671 12228008 10.1080/10635150290102357 (Pubitemid 35180695)
32. B Rannala JP Huelsenbeck Z Yang R Nielsen 1998 Taxon sampling and the accuracy of large phylogenies Syst Biol 47 702 710 12066312 10.1080/ 106351598260680 1:STN:280:DC%2BD38zitleltw%3D%3D (Pubitemid 128370907)
33. F Rappaz 1987 Taxonomie et nomenclature des Diatrypacées à asques octosporées Mycol Helv 2 285 648
34. PE Rolshausen FP Trouillas WD Gubler 2004 Identification of Eutypa lata by PCR-RFLP Plant Dis 88 925 929 10.1094/PDIS.2004.88.9.925 1:CAS:528: DC%2BD2cXnsVKhs7s%3D (Pubitemid 39081788)
35. AI Romero CC Carmarán 2003 First contribution to the study of Cryptosphaeria from Argentina Fungal Divers 12 161 167 (Pubitemid 39103850)
36. Saccardo PA (1882) Sylloge Fungorum. Vol 1
37. Saccardo PA (1905) Sylloge Fungorum. Vol 3
38. Saccardo PA (1926) Sylloge Fungorum. Vol 24
39. Sinclair WA, Lyon HH (2005) Diseases of trees and shrubs, 2nd edn. Cornell University Press, Ithaca, p 659
40. MR Sosnowski R Lardner TJ Wicks ES Scott 2007 The influence of grapevine cultivar and isolate of Eutypa lata on wood and foliar symptoms Plant Dis 91 924 931 10.1094/PDIS-91-8-0924 (Pubitemid 47106318)
41. BM Spooner 1981 New records and species of British microfungi Trans Br Mycol Soc 76 265 301 10.1016/S0007-1536(81)80149-0
42. Swofford DL (1999) PAUP*.. Phylogenetic analysis using parsimony (and other methods). Version 4.0b4a. Sinauer Associates, Sunderland
43. JD Thompson DG Higgins TJ Gibson 1994 Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680 7984417 10.1093/nar/22.22.4673 1:CAS:528: DyaK2MXitlSgu74%3D (Pubitemid 24354800)
44. LH Tiffany JC Gilman 1965 Iowa Ascomycetes IV, Diatrypaceae Iowa State J Sci 40 121 161
45. FP Trouillas WD Gubler 2004 Identification and characterization of Eutypa leptoplaca, a new pathogen of grapevine in Northern California Mycol Res 108 1195 1204 15535070 10.1017/S0953756204000863 1:CAS:528:DC%2BD2cXot1Clu7o%3D (Pubitemid 39384760)
46. FP Trouillas WD Gubler 2010 Pathogenicity of Diatrypaceae species in grapevines in California Plant Dis 94 867 872 10.1094/PDIS-94-7-0867
47. FP Trouillas JR Úrbez-Torres WD Gubler 2010 Diversity of diatrypaceous fungi associated with grapevine canker diseases in California Mycologia 102 319 336 20361500 10.3852/08-185 1:CAS:528:DC%2BC3cXkvFOiur4%3D
48. FP Trouillas MR Sosnowski WD Gubler 2010 Two new species of Diatrypaceae from coastal wattle in Coorong National Park, South Australia Mycosphere 1 183 188
49. JR Úrbez-Torres P Adams J Kama WD Gubler 2009 Identification, incidence and pathogenicity of fungal species associated with grapevine dieback in Texas Am J Enol Vitic 60 4 497 507
50. LN Vasilyeva SL Stephenson 2004 Pyrenomycetes of the Great Smoky Mountains National Park. I. Diatrype Fr. (Diatrypaceae) Fungal Divers 17 191 201 (Pubitemid 40102932)
51. LN Vasilyeva SL Stephenson 2005 Pyrenomycetes of the Great Smoky Mountains National Park. II. Diatrypella (Ces. et De Not.) Nitschke and Cryptovalsa Ces et De Not. (Diatrypaceae) Fungal Divers 19 189 200 (Pubitemid 41391645)
52. LN Vasilyeva SL Stephenson 2006 Pyrenomycetes of the Great Smoky Mountains National Park. III. Cryptosphaeria Ces. et De Not., Eutypa Tul. et C. Tul., and Eutypella (Nitschke) Sacc. (Diatrypaceae) Fungal Divers 22 243 254
53. LN Vasilyeva SL Stephenson 2009 The genus Diatrype (Ascomycota, Diatrypaceae) in Arkansas and Texas (USA) Mycotaxon 107 307 313 10.5248/107.307
54. LE Wehmeyer 1926 A biologic and phylogenetic study of the stromatic sphaeriales Am J Bot 13 574 645
55. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White J (eds) PCR Protocols, a guide to methods and applications. Academic, San Diego, pp 315-322
56. ZQ Yuan 1996 Fungi and associated tree diseases in Melville Island, Northern Territory, Australia Aust Syst Bot 9 337 360 10.1071/SB9960337
57. DJ Zwickl DM Hillis 2002 Increased taxon sampling greatly reduces phylogenetic error Syst Biol 51 588 598 12228001 10.1080/10635150290102339 (Pubitemid 35180690)