-
1
-
-
34547275473
-
Brownian motion in a field of force and the diffusion model of chemical reactions
-
Kramers, H. A. (1940) Brownian motion in a field of force and the diffusion model of chemical reactions. Physica 7, 284-304
-
(1940)
Physica
, vol.7
, pp. 284-304
-
-
Kramers, H.A.1
-
2
-
-
0347193736
-
Reaction-rate theory: Fifty years after Kramers
-
Hänggi, P., Talkner, P., and Borkovec, M. (1990) Reaction-rate theory: fifty years after Kramers. Rev. Mod. Phys. 62, 251-342
-
(1990)
Rev. Mod. Phys.
, vol.62
, pp. 251-342
-
-
Hänggi, P.1
Talkner, P.2
Borkovec, M.3
-
3
-
-
0026636807
-
The role of solvent viscosity in the dynamics of protein conformational changes
-
Ansari, A., Jones, C. M., Henry, E. R., Hofrichter, J., and Eaton, W. A. (1992) The role of solvent viscosity in the dynamics of protein conformational changes. Science 256, 1796-1798
-
(1992)
Science
, vol.256
, pp. 1796-1798
-
-
Ansari, A.1
Jones, C.M.2
Henry, E.R.3
Hofrichter, J.4
Eaton, W.A.5
-
4
-
-
0028271936
-
Conformational relaxation and ligand binding in myoglobin
-
DOI 10.1021/bi00183a017
-
Ansari, A., Jones, C. M., Henry, E. R., Hofrichter, J., and Eaton, W. A. (1994) Conformational relaxation and ligand binding in myoglobin. Biochemistry 33, 5128-5145 (Pubitemid 24150979)
-
(1994)
Biochemistry
, vol.33
, Issue.17
, pp. 5128-5145
-
-
Ansari, A.1
Jones, C.M.2
Henry, E.R.3
Hofrichter, J.4
Eaton, W.A.5
-
5
-
-
0035797991
-
Origin of friction derived from rupture dynamics
-
Suda, H. (2001) Origin of friction derived from rupture dynamics. Langmuir 17, 6045
-
(2001)
Langmuir
, vol.17
, pp. 6045
-
-
Suda, H.1
-
6
-
-
76249117417
-
Experimental evidence for a frustrated energy landscape in a three-helix-bundle protein family
-
Wensley, B. G., Batey, S., Bone, F. A., Chan, Z. M., Tumelty, N. R., Steward, A., Kwa, L. G., Borgia, A., and Clarke, J. (2010) Experimental evidence for a frustrated energy landscape in a three-helix-bundle protein family. Nature 463, 685-688
-
(2010)
Nature
, vol.463
, pp. 685-688
-
-
Wensley, B.G.1
Batey, S.2
Bone, F.A.3
Chan, Z.M.4
Tumelty, N.R.5
Steward, A.6
Kwa, L.G.7
Borgia, A.8
Clarke, J.9
-
7
-
-
73249133356
-
Direct observation of ultrafast folding and denatured state dynamics in single protein molecules
-
Neuweiler, H., Johnson, C. M., and Fersht, A. R. (2009) Direct observation of ultrafast folding and denatured state dynamics in single protein molecules. Proc. Natl. Acad. Sci. U. S. A. 106, 18569-18574
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 18569-18574
-
-
Neuweiler, H.1
Johnson, C.M.2
Fersht, A.R.3
-
8
-
-
4744357562
-
Internal friction controls the speed of protein folding from a compact configuration
-
DOI 10.1021/bi048822m
-
Pabit, S. A., Roder, H., and Hagen, S. J. (2004) Internal friction controls the speed of protein folding from a compact configuration. Biochemistry 43, 12532-12538 (Pubitemid 39314714)
-
(2004)
Biochemistry
, vol.43
, Issue.39
, pp. 12532-12538
-
-
Pabit, S.A.1
Roder, H.2
Hagen, S.J.3
-
10
-
-
1642379707
-
A Limiting Speed for Protein Folding at Low Solvent Viscosity
-
DOI 10.1021/ja049966r
-
Qiu, L., and Hagen, S. J. (2004) A limiting speed for protein folding at low solvent viscosity. J. Am. Chem. Soc. 126, 3398-3399 (Pubitemid 38366711)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.11
, pp. 3398-3399
-
-
Qiu, L.1
Hagen, S.J.2
-
11
-
-
34248594515
-
Site directed mutagenesis at position 193 of human trypsin 4 alters the rate of conformational change during activation: Role of local internal viscosity in protein dynamics
-
DOI 10.1002/prot.21398
-
Toth, J., Simon, Z., Medveczky, P., Gombos, L., Jelinek, B., Szilagyi, L., Graf, L., and Malnasi-Csizmadia, A. (2007) Site directed mutagenesis at position 193 of human trypsin 4 alters the rate of conformational change during activation: role of local internal viscosity in protein dynamics. Proteins 67, 1119-1127 (Pubitemid 46753956)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.67
, Issue.4
, pp. 1119-1127
-
-
Toth, J.1
Simon, Z.2
Medveczky, P.3
Gombos, L.4
Jelinek, B.5
Szilagyi, L.6
Graf, L.7
Malnasi-Csizmadia, A.8
-
12
-
-
0015994917
-
PH dependence of chymotrypsin catalysis. Appendix: Substrate binding to dimeric alpha-chymotrypsin studied by x-ray diffraction and the equilibrium method
-
Fersht, A. R., and Renard, M. (1974) pH dependence of chymotrypsin catalysis. Appendix: substrate binding to dimeric alpha-chymotrypsin studied by x-ray diffraction and the equilibrium method. Biochemistry 13, 1416-1426
-
(1974)
Biochemistry
, vol.13
, pp. 1416-1426
-
-
Fersht, A.R.1
Renard, M.2
-
13
-
-
0024350344
-
Raman spectroscopic study of the changes in secondary structure of chymotrypsin: Effect of pH and pressure on the salt bridge
-
DOI 10.1016/0167-4838(89)90217-3
-
Heremans, L., and Heremans, K. (1989) Raman spectroscopic study of the changes in secondary structure of chymotrypsin: effect of pH and pressure on the salt bridge. Biochim. Biophys. Acta 999, 192-197 (Pubitemid 20000179)
-
(1989)
Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology
, vol.999
, Issue.2
, pp. 192-197
-
-
Heremans, L.1
Heremans, K.2
-
14
-
-
0018133246
-
Refolding transition of alpha-chymotrypsin: pH and salt dependence
-
Stoesz, J. D., and Lumry, R. W. (1978) Refolding transition of alpha-chymotrypsin: pH and salt dependence. Biochemistry 17, 3693-3699 (Pubitemid 9022575)
-
(1978)
Biochemistry
, vol.17
, Issue.18
, pp. 3693-3699
-
-
Stoesz, J.D.1
Lumry, R.W.2
-
15
-
-
4344569109
-
A fluorescence stopped-flow kinetic study of the conformational activation of alpha-chymotrypsin and several mutants
-
DOI 10.1110/ps.04709604
-
Verheyden, G., Matrai, J., Volckaert, G., and Engelborghs, Y. (2004) A fluorescence stopped-flow kinetic study of the conformational activation of alpha-chymotrypsin and several mutants. Protein Sci. 13, 2533-2540 (Pubitemid 39128874)
-
(2004)
Protein Science
, vol.13
, Issue.9
, pp. 2533-2540
-
-
Verheyden, G.1
Matrai, J.2
Volckaert, G.3
Engelborghs, Y.4
-
16
-
-
0017893796
-
The transition of bovine trypsinogen to a trypsin like state upon strong ligand binding. The refined crystal structures of the bovine trypsinogen pancreatic trypsin inhibitor complex and of its ternary complex with Ile-Val at 1.9 A resolution
-
Bode, W., Schwager, P., and Huber, R. (1978) The transition of bovine trypsinogen to a trypsin-like state upon strong ligand binding. The refined crystal structures of the bovine trypsinogen- pancreatic trypsin inhibitor complex and of its ternary complex with Ile-Val at 1.9 A resolution. J. Mol. Biol. 118, 99-112 (Pubitemid 8271375)
-
(1978)
Journal of Molecular Biology
, vol.118
, Issue.1
, pp. 99-112
-
-
Bode, W.1
Schwager, P.2
Huber, R.3
-
17
-
-
38949084592
-
Probing conformational plasticity of the activation domain of trypsin: The role of glycine hinges
-
DOI 10.1021/bi701454e
-
Gombos, L., Kardos, J., Patthy, A., Medveczky, P., Szilagyi, L., Malnasi-Csizmadia, A., and Graf, L. (2008) Probing conformational plasticity of the activation domain of trypsin: the role of glycine hinges. Biochemistry 47, 1675-1684 (Pubitemid 351231217)
-
(2008)
Biochemistry
, vol.47
, Issue.6
, pp. 1675-1684
-
-
Gombos, L.1
Kardos, J.2
Patthy, A.3
Medveczky, P.4
Szilagyi, L.5
Malnasi-Csizmadia, A.6
Graf, L.7
-
18
-
-
21844455282
-
Energetic and structural consequences of perturbing Gly-193 in the oxyanion hole of serine proteases
-
DOI 10.1074/jbc.M503499200
-
Bobofchak, K. M., Pineda, A. O., Mathews, F. S., and Di Cera, E. (2005) Energetic and structural consequences of perturbing Gly-193 in the oxyanion hole of serine proteases. J. Biol. Chem. 280, 25644-25650 (Pubitemid 40962273)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.27
, pp. 25644-25650
-
-
Bobofchak, K.M.1
Pineda, A.O.2
Mathews, F.S.3
Di, C.E.4
-
19
-
-
0036304291
-
Crystal structure reveals basis for the inhibitor resistance of human brain trypsin
-
DOI 10.1006/jmbi.2001.5305
-
Katona, G., Berglund, G. I., Hajdu, J., Graf, L., and Szilagyi, L. (2002) Crystal structure reveals basis for the inhibitor resistance of human brain trypsin. J. Mol. Biol. 315, 1209-1218 (Pubitemid 34729298)
-
(2002)
Journal of Molecular Biology
, vol.315
, Issue.5
, pp. 1209-1218
-
-
Katona, G.1
Berglund, G.I.2
Hajdu, J.3
Graf, L.4
Szilagyi, L.5
-
20
-
-
0034613031
-
C,T-Dependence of the viscosity and the self-diffusion coefficients in some aqueous carbohydrate solutions
-
Rampp, M., Buttersack, C., and Lüdemann, H.-D. (2000) c,T-Dependence of the viscosity and the self-diffusion coefficients in some aqueous carbohydrate solutions. Carb. Res. 328, 561
-
(2000)
Carb. Res.
, vol.328
, pp. 561
-
-
Rampp, M.1
Buttersack, C.2
Lüdemann, H.-D.3
-
21
-
-
33744948792
-
Thermodynamic analysis reveals structural rearrangement during the acylation step in human trypsin 4 on 4-methylumbelliferyl 4-guanidinobenzoate substrate analogue
-
DOI 10.1074/jbc.M512301200
-
Toth, J., Gombos, L., Simon, Z., Medveczky, P., Szilagyi, L., Graf, L., and Malnasi-Csizmadia, A. (2006) Thermodynamic analysis reveals structural rearrangement during the acylation step in human trypsin 4 on 4-methylumbelliferyl 4-guanidinobenzoate substrate analogue. J. Biol. Chem. 281, 12596-12602 (Pubitemid 43855348)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.18
, pp. 12596-12602
-
-
Toth, J.1
Gombos, L.2
Simon, Z.3
Medveczky, P.4
Szilagyi, L.5
Graf, L.6
Malnasi-Csizmadia, A.7
-
22
-
-
84887869313
-
-
Springer, Dordrecht, The Netherlands
-
Viswanath, D. S., Ghosh, T. K., Prasad, D. H. L., Dutt, N. V. K., and Rani, K. Y. (2007). Viscosity of Liquids, Springer, Dordrecht, The Netherlands
-
(2007)
Viscosity of Liquids
-
-
Viswanath, D.S.1
Ghosh, T.K.2
Prasad, D.H.L.3
Dutt, N.V.K.4
Rani, K.Y.5
-
23
-
-
0019322674
-
Solvent viscosity and protein dynamics
-
Beece, D., Eisenstein, L., Frauenfelder, H., Good, D., Marden, M. C., Reinisch, L., Reynolds, A. H., Sorensen, L. B., and Yue, K. T. (1980) Solvent viscosity and protein dynamics. Biochemistry 19, 5147-5157
-
(1980)
Biochemistry
, vol.19
, pp. 5147-5157
-
-
Beece, D.1
Eisenstein, L.2
Frauenfelder, H.3
Good, D.4
Marden, M.C.5
Reinisch, L.6
Reynolds, A.H.7
Sorensen, L.B.8
Yue, K.T.9
-
24
-
-
77957916566
-
Solvent viscosity and friction in protein folding dynamics
-
Hagen, S. J. (2010) Solvent viscosity and friction in protein folding dynamics. Curr. Protein Pept. Sci. 11, 385-395
-
(2010)
Curr. Protein Pept. Sci.
, vol.11
, pp. 385-395
-
-
Hagen, S.J.1
-
25
-
-
0000794732
-
Transient kinetics of chemical reactions with bounded diffusion perpendicular to the reaction coordinate: Intramolecular processes with slow conformational changes
-
Agmon, N., and Hopfield, J. J. (1982) Transient kinetics of chemical reactions with bounded diffusion perpendicular to the reaction coordinate: Intramolecular processes with slow conformational changes. J. Chem. Phys. 78, 6947-6959
-
(1982)
J. Chem. Phys.
, vol.78
, pp. 6947-6959
-
-
Agmon, N.1
Hopfield, J.J.2
-
26
-
-
5244325378
-
Dynamical disorder: Passage through a fluctuating bottleneck
-
Zwanzig, R. (1992) Dynamical disorder: passage through a fluctuating bottleneck. J. Chem. Phys. 97, 3587-3589
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 3587-3589
-
-
Zwanzig, R.1
-
27
-
-
0026320866
-
The energy landscapes and motions of proteins
-
Frauenfelder, H., Sligar, S. G., and Wolynes, P. G. (1991) The energy landscapes and motions of proteins. Science 254, 1598-1603 (Pubitemid 21917496)
-
(1991)
Science
, vol.254
, Issue.5038
, pp. 1598-1603
-
-
Frauenfelder, H.1
Sligar, S.G.2
Wolynes, P.G.3
-
28
-
-
0022114079
-
Protein states and proteinquakes
-
Ansari, A., Berendzen, J., Bowne, S. F., Frauenfelder, H., Iben, I. E., Sauke, T. B., Shyamsunder, E., and Young, R. D. (1985) Protein states and proteinquakes. Proc. Natl. Acad. Sci. U. S. A. 82, 5000-5004
-
(1985)
Proc. Natl. Acad. Sci. U. S. A.
, vol.82
, pp. 5000-5004
-
-
Ansari, A.1
Berendzen, J.2
Bowne, S.F.3
Frauenfelder, H.4
Iben, I.E.5
Sauke, T.B.6
Shyamsunder, E.7
Young, R.D.8
-
29
-
-
0000076228
-
Diffusion coefficient for a Brownian particle in a periodic field of force: I. Large friction limit. Phys. A Stat
-
Festa, R., and d'Agliano, E. G. (1978) Diffusion coefficient for a Brownian particle in a periodic field of force: I. Large friction limit. Phys. A Stat. Theor. Phys. 90, 229
-
(1978)
Theor. Phys.
, vol.90
, pp. 229
-
-
Festa, R.1
D'Agliano, E.G.2
-
30
-
-
0024121530
-
Diffusion in a rough potential
-
Zwanzig, R. (1988) Diffusion in a rough potential. Proc. Natl. Acad. Sci. U. S. A. 85, 2029-2030
-
(1988)
Proc. Natl. Acad. Sci. U. S. A.
, vol.85
, pp. 2029-2030
-
-
Zwanzig, R.1
-
31
-
-
5144223810
-
Bulk-solvent and hydration-shell fluctuations, similar to alpha- and beta-fluctuations in glasses, control protein motions and functions
-
DOI 10.1073/pnas.0405573101
-
Fenimore, P. W., Frauenfelder, H., McMahon, B. H., and Young, R. D. (2004) Bulk-solvent and hydration-shell fluctuations, similar to alpha- and beta-fluctuations in glasses, control protein motions and functions. Proc. Natl. Acad. Sci. U. S. A. 101, 14408-14413 (Pubitemid 39346762)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.40
, pp. 14408-14413
-
-
Fenimore, P.W.1
Frauenfelder, H.2
McMahon, B.H.3
Young, R.D.4
-
32
-
-
20044395620
-
Direct measurement of protein energy landscape roughness
-
DOI 10.1038/sj.embor.7400403
-
Nevo, R., Brumfeld, V., Kapon, R., Hinterdorfer, P., and Reich, Z. (2005) Direct measurement of protein energy landscape roughness. EMBO Rep. 6, 482-486 (Pubitemid 40767083)
-
(2005)
EMBO Reports
, vol.6
, Issue.5
, pp. 482-486
-
-
Nevo, R.1
Brumfeld, V.2
Kapon, R.3
Hinterdorfer, P.4
Reich, Z.5
|