Genetic Sex Identification and the Potential Evolution of Sex Determination in Pacific Halibut (Hippoglossus stenolepis)

Marine Biotechnology

Volumn 13, Issue 5, 2011, Pages 1027-1037

  Galindo, Heather M ^a   Loher, Timothy ^b   Hauser, Lorenz ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

^b INTERNATIONAL PACIFIC HALIBUT COMMISSION   (United States)

Author keywords

Genetics; Marine fish; Pacific halibut; Sex determination; Sex identification

Indexed keywords

GENETICS; MARINE FISH; PACIFIC HALIBUT; SEX DETERMINATION; SEX IDENTIFICATION;

DNA SEQUENCES; ECOLOGY;

BIOLOGY;

ALLELE; BIOTECHNOLOGY; EVOLUTIONARY BIOLOGY; FISHERY MANAGEMENT; FLATFISH; GENETIC ANALYSIS; GENETIC MARKER; HYPOTHESIS TESTING; PHYSIOLOGY; SEX DETERMINATION; SPECIATION (BIOLOGY); TELEOST; WILD POPULATION;

ANIMAL; ARTICLE; FEMALE; FLOUNDER; GENETIC MARKER; GENETICS; MALE; METHODOLOGY; PHYSIOLOGY; SEX DETERMINATION;

ANIMALS; FEMALE; FLOUNDER; GENETIC MARKERS; MALE; SEX DETERMINATION ANALYSIS;

HIPPOGLOSSUS HIPPOGLOSSUS; HIPPOGLOSSUS STENOLEPIS; PLEURONECTIFORMES;

EID: 80051668912     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-011-9366-7     Document Type: Article

References (49)

1. Beardmore JA, Mair GC, Lewis RI (2001) Monosex male production in finfish as exemplified by tilapia: applications, problems, and prospects. Aquaculture 197: 283-301.
2. Carrasco LAP, Penman DJ, Bromage N (1999) Evidence for the presence of sex chromosomes in the nile tilapia (Oreochromis niloticus) from synaptonemal complex analysis of XX, XY, and YY genotypes. Aquaculture 173: 207-218.
3. Chen S-L, Li J, Deng S-P, Tian Y-S, Wang Q-Y, Zhuang Z-M, Sha Z-X, Xu J-Y (2007) Isolation of female-specific AFLP markers and molecular identification of genetic sex in half-smooth tongue sole (Cynoglossus semilaevis). Mar Biotechnol 9: 273-280.
4. Clark WG (2004) A method of estimating the sex composition of commercial landings from setline survey data. In Report of assessment and research activities 2003. Edited by L. Sadorus. International Pacific Halibut Commission, Seattle, WA. pp. 111-162. Available at www. iphc. washington. edu/HALCOM/pubs/rara/2003rara/2K304RARA. pdf.
5. Clark WG, Hare SR (2006) Assessment and management of Pacifc halibut: data, methods, and policy. IPHC Sci. Rep. 83. International Pacific Halibut Commission, Seattle, WA. Available at http://www. iphc. washington. edu/HALCOM/pubs/scirep/SciReport0083. pdf.
6. Clark WG, Hare SR, Parma AM, Sullivan PJ, Trumble RJ (1999) Decadal changes in growth and recruitment of Pacific halibut (Hippoglossus stenolepis). Can J Fish Aquat Sci 56: 242-252.
7. Cnaani A, Lee BY, Zilberman N et al (2008) Genetics of sex determination in tilapiine species. Sex Dev 2: 43-54.
8. Coughlan J, Stefansson M, Galvin P, Dillane E, Fitzgerald R, Cross TF (2000) Isolation and characterization of 11 microsatellite loci in Atlantic halibut (Hippoglossus hippoglossus L.). Mol Ecol 9(6): 822-824.
9. Devlin RH, Nagahama Y (2002) Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences. Aquaculture 208(3-4): 191-364.
10. Excoffier L, Laval G, Schneider S (2005) Arlequin (version 3. 0): an integrated software package for population genetics data analysis. Evol Bioinform 1: 47-50.
11. Gomez-Uchida D, Weetman D, Hauser L, Galleguillos R, Retamal M (2003) Allozyme and AFLP analyses of genetic population structure in the hairy edible crab Cancer setosus from the Chilean coast. J Crustac Biol 23: 486-494.
12. Grant WS, Teel DJ, Kobayashi T, Schmitt C (1984) Biochemical population genetics of Pacific halibut (Hippoglossus stenolepis) and comparison with Atlantic halibut (H. hippoglossus) Canadian. J Fish Aquat Sci 41: 1083-1088.
13. Habicht C, Seeb LW, Seeb JE (2007) Genetic and ecological divergence defines population structure of sockeye salmon populations returning to Bristol Bay, Alaska, and provides a tool for admixture analysis. Trans Am Fish Soc 136: 82-94.
14. Hare SR (2009) Assessment of the Pacific halibut stock at the end of 2009. In Report of assessment and research activities 2009. Edited by L. Sadorus. International Pacific Halibut Commission, Seattle, Wash. pp. 91-170. Available at www. iphc. washington. edu/halcom/pubs/rara/2009rara/RARApopass_revised2_10. pdf.
15. Hare SR, Clark WG (2009) Assessment of the Pacific halibut stock at the end of 2008. In Report of assessment and research activities 2008. Edited by L. Sadorus. International Pacific Halibut Commission, Seattle, Wash. pp. 137-201. Available at www. iphc. washington. edu/halcom/pubs/rara/2008rara/2k8rara04. pdf.
16. Hauser L, Seeb JE (2008) Advances in molecular technology and their impact on fisheries genetics. Fish Fish 9(4): 473-486.
17. Hauser L, Spies I, Loher T (2006) Microsatellite screening in Pacific halibut (Hippoglossus stenolepis) and a preliminary examination of population structure based on observed DNA variation. IPHC Sci. Rep. 81. International Pacific Halibut Commission, Seattle, WA. Available at http://www. iphc. washington. edu/HALCOM/pubs/scirep/SciReport0081. pdf.
18. Kaimmer SM (2000) Pacific halibut tag release programs and tag release and recovery data, 1925 through 1998. IPHC Tech. Rep. 41. International Pacific Halibut Commission, Seattle, WA. Available at http://www. iphc. washington. edu/HALCOM/pubs/techrep/tech0041. pdf.
19. Leaman BL, Geernaert TO, Loher T, Clark WG (2002) Further examination of biological issues concerning an extended commercial fishing season. In Report of Assessment and Research Activities 2004. Edited by L. Sadorus. International Pacific Halibut Commission, Seattle, WA. pp. 53-74. Available at iphc. washington. edu/halcom/pubs/rara/2002rara/2002rara. htm.
20. Lee BY, Penman DJ, Kocher TD (2003) Identification of a sex-determining region in Nile tilapia (Oreochromis niloticus) using bulked segregant analysis. Anim Genet 34: 379-383.
21. Lee BY, Hulata G, Kocher TD (2004) Two unlinked loci controlling the sex of blue tilapia (Oreochromis aureus). Heredity 92: 543-549.
22. Loher T, Blood CL (2009) Dispersion of Pacific halibut (Hippoglossus stenolepis) summering off British Columbia and the US Pacific Northwest, evaluated via satellite archival tagging. Can J Fish Aquat Sci 66(9): 1409-1422.
23. Luckenbach JA, Borski RJ, Daniels HV, Godwin J (2009) Sex determination in flatfishes: mechanisms and environmental influences. Semin Cell Dev Biol 20: 256-263.
24. Ma HY, Chen SL, Yang JF, Ji XS, Chen SQ, Tian YS, Bi JZ (2010) Isolation of sex-specific AFLP markers in Spotted Halibut (Verasper variegatus). Environ Biol Fish 88: 9-14.
25. Mair GC, Scott AG, Penman DJ, Skibinski DOF, Beardmore JA (1991) Sex determination in the genus Oreochromis: 2. Sex reversal, hybridization, gynogenesis and triploidy in O. aureus Steindachner. Theor Appl Genet 82: 153-160.
26. Mank JE, Promislow DEL, Avise JC (2006) Evolution of alternative sex-determining mechanisms in teleost fishes. Biol J Linn Soc 87(1): 83-93.
27. Martinez P, Bouza C, Hermida M, Fernandez J, Toro MA, Vera M, Pardo B, Millan A, Fernandez C, Vilas R, Vinas A, Sanchez L, Felip A, Piferrer F, Ferreiro I, Cabaleiro S (2009) Identification of the major sex-determining region of turbot (Scophthalmus maximus). Genetics 183: 1443-1452.
28. Müller H, Klenz B (1994) Quantitative analysis of the Rügen spring spawning herring larvae surveys with regard to the recruitment of the western Baltic and Division IIIa stock. ICES Document CM 1994/L: 20. 18.
29. Nielsen JL, Graziano SL, Seitz AC (2009) Fine-scale population genetic structure in Alaskan Pacific halibut (Hippoglossus stenolepis). Conserv Genet. doi: 10: 107/sl0592-009-9943-8.
30. Paetkau D, Calvert W, Stirling I, Strobeck C (1995) Microsatellite analysis of population structure in Canadian polar bears. Mol Ecol 4(3): 347-354.
31. Penman DJ, Piferrer F (2008) Fish gonadogenesis. Part I: genetic and environmental mechanisms of sex determination. Rev Fish Sci 16: 16-34. doi: 10. 1080/10641260802324610.
32. Piferrer F, Guiguen Y (2008) Fish gonadogenesis. Part II: molecular biology and genomics of sex differentiation. Rev Fish Sci 16: 35-55. doi: 10. 1080/10641260802324644.
33. Piry S, Alapetite A, Cornuet JM, Paetkau D, Baudouin L, Estoup A (2004) GENECLASS2: a software for genetic assignment and first-generation migrant detection. J Hered 95(6): 536-539. doi: 10. 1093/jhered/esh074.
34. Raymond M, Rousset F (1995) GENEPOP (version 1. 2): population genetics software for exact tests and ecumenicism. J Hered 86: 248-249.
35. Reid DP, Pongsomboon S, Jackson T, McGowan C, Murphy C, Martin-Robichaud D, Reith M (2005) Microsatellite analysis indicates an absence of population structure among Hippoglossus hippoglossus in the north-west Atlantic. J Fish Biol 67(2): 570-576. doi: 10. 1111/j. 1095-8649. 2005. 00733. x.
36. Reid DP, Smith CA, Rommens M, Blanchard B, Martin-Robichaud D, Reith M (2007) A genetic linkage map of Atlantic halibut (Hippoglossus hippoglossus L.). Genetics 177: 1193-1205.
37. Rousset F (2008) Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol Ecol Resour 8: 103-106.
38. Sandra GE, Norma MM (2010) Sexual determination and differentiation in teleost fish. Rev Fish Biol Fish 20: 101-121.
39. Schmitt CC, St. Pierre G (1997) Evaluation of two methods to determine maturity of Pacific halibut. IPHC Tech. Rep. 35. International Pacific Halibut Commission, Seattle, Wash. Available at www. iphc. washington. edu/halcom/pubs/techrep/tech0035. pdf.
40. Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18(2): 233-234.
41. Schwarzer J, Misof B, Tautz D, Schliewen UK (2009) The root of the East African cichlid radiations. BMC Evol Biol 9: 186.
42. St. Pierre G (1984) Spawning locations and season for Pacific halibut. IPHC Sci. Rep. 70. International Pacific Halibut Commission, Seattle, Wash. Available at www. iphc. washington. edu/halcom/pubs/scirep/SciReport0070. pdf.
43. Tvedt HB, Benfey TJ, Martin-Robichaud DJ, McGowan C, Reith M (2006) Gynogenesis and sex determination in Atlantic halibut (Hippoglossus hippoglossus). Aquaculture 252(2-4): 573-583. doi: 10. 1016/j. aquaculture. 2005. 06. 042.
44. van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538.
45. Volff JN, Nanda I, Schmid M, Schartl M (2007) Governing sex determination in fish: regulatory putsches and ephemeral dictators. Sex Dev 1: 85-99.
46. von Hofsten J, Olsson PE (2005) Zebrafish sex determination and differentiation: involvement of FTZ-F1 genes. Reprod Biol Endocrinol 3: 63.
47. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38(6): 1358-1370.
48. Wohlfarth GW, Wedekind H (1991) The heredity of sex determination in tilapias. Aquaculture 92: 143-156.
49. Woodland RJ, Secor DH (2007) Year-class strength and recovery of endangered shortnose sturgeon in the Hudson River, New York. Trans Am Fish Soc 136: 72-81. doi: 10. 1577/T06-015. 1.