Characterization of retrotransposon sequences expressed in inflorescences of apomictic and sexual Paspalum notatum plants

Sexual Plant Reproduction

Volumn 24, Issue 3, 2011, Pages 231-246

  Ochogavía, Ana Claudia ^a   Seijo, José Guillermo ^b   González, Ana María ^b   Podio, Maricel ^a,b   Silveira, Erica Duarte ^c   Lacerda, Ana Luiza Machado ^c   de Campos Carneiro, Vera Tavares ^c   Ortiz, Juan Pablo A ^a,b   Pessino, Silvina Claudia ^a  

^a UNIVERSIDAD NACIONAL DE ROSARIO   (Argentina)

^b INSTITUTO DE BOTÁNICA DEL NORDESTE   (Argentina)

^c UNIVERSITY OF BRASILIA   (Brazil)

Author keywords

Apomixis; Apospory; Asexual reproduction; Gene expression regulation; Retrotransposon

Indexed keywords

ARTICLE; ASEXUAL REPRODUCTION; CHROMOSOME MAP; FLOWERING; GENE DOSAGE; GENETICS; IN SITU HYBRIDIZATION; METABOLISM; NUCLEIC ACID AMPLIFICATION; PASPALUM; PLANT GENOME; RETROPOSON;

CHROMOSOME MAPPING; FLOWERING TOPS; GENE DOSAGE; GENOME, PLANT; IN SITU HYBRIDIZATION; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PASPALUM; REPRODUCTION, ASEXUAL; RETROELEMENTS;

PASPALUM; PASPALUM NOTATUM;

EID: 80051668689     PISSN: 09340882     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00497-011-0165-0     Document Type: Article

References (47)

1. Albertini E, Marconi G, Barcaccia G, Raggi L, Falcinelli M (2004) Isolation of candidate genes for apomixis in Poa pratensis. Plant Mol Biol 56: 879-894.
2. Albertini E, Marconi G, Reale L, Barcaccia G, Proceddu A, Ferranti F, Falcinelli M (2005) SERK and APOSTART. Candidates genes for apomixis in Poa pratensis. Plant Physiol 138: 2185-2199.
3. Bashaw EC, Hovin AW, Holt EC (1970) Apomixis, its evolutionary significance and utilization in plant breeding. In: Norman MJT (ed) Proceedings of 11th international grasslands congress. University of Queensland Press, St. Lucía, pp 245-248.
4. Bennetzen JL (2005) Transposable elements, gene creation and genome rearrangement in flowering plants. Curr Opin Genet Dev 15: 621-627.
5. Burton GW (1946) Bahiagrass types. Agron J 38: 273-281.
6. Burton GW (1948) The method of reproduction in common Bahiagrass, Paspalum notatum. Agron J 40: 443-452.
7. Burton GW (1955) Breeding Pensacola bahiagrass Paspalum notatum: I. Method of reproduction. Agron J 47: 311-314.
8. Burton GW (1967) A search for the origin of Pensacola bahiagrass. Econ Bot 21: 379-382.
9. Capron A, Gourgues M, Neiva LS, Faure J-E, Berger F, Pagnussat G, Krishnan A, Alvarez-Mejia C, Vielle-Calzada J-P, Lee Y-R, Liu B, Sundaresan V (2008) Maternal control of male-gamete delivery in Arabidopsis involves a putative GPI-anchored protein encoded by the LORELEI gene. Plant Cell 20: 3038-3049.
10. Cervigni GD, Paniego N, Díaz M, Selva JP, Zappacosta D, Zanazzi D, Landerreche I, Martelotto L, Felitti S, Pessino S, Spangenberg G, Echenique V (2008) Expressed sequence tag analysis and development of associated markers in a near-isogenic plant system of Eragrostis curvula. Plant Mol Biol 67: 7-10.
11. ′ ends by amplification of adaptor-ligand cDNA. BioTechniques 21: 526-534.
12. Crane C (2002) Classification of apomictic mechanisms. In: Savidan Y, Carman JG, Dresselhaus T (eds) The flowering of apomixis: from mechanisms to genetic engineering. CIMMYT, IRD, European Commission, DG VI, (FAIR), pp 24-34.
13. Daurelio LD, Espinoza F, Quarin CL, Pessino SC (2004) Genetic diversity in sexual diploid and apomictic tetraploid populations of Paspalum notatum situated in sympatry or allopatry. Plant Syst Evol 244: 189-199.
14. Duarte Silveira E, Alves-Ferreira M, Arrais Guimarães L, Rodrigues da Silva F, Tavares de Campos Carneiro V (2009) Selection of reference genes for quantitative real-time PCR expression studies in the apomictic and sexual grass Brachiaria brizantha. BMC Plant Biol 9: 84. doi: 10. 1186/1471-2229-9-84.
15. Durán-Figueroa N, Vielle-Calzada JP (2010) ARGONAUTE9-dependent silencing of transposable elements in pericentromeric regions of Arabidopsis. Plant Signal Behav 6(5): 11.
16. Jarret RL, Ozias-Akins P, Phatak S, Nadimpalli R, Duncan R, Hiliard S (1995) DNA contents in Paspalum spp. determined by flow cytometry. Genet Resour Crop Evol 42: 242-273.
17. Jiang N, Bao Z, Zhang X, Eddy SR, Wessler SR (2004) Pack-MULE transposable elements mediate gene evolution in plants. Nature 431: 569-573.
18. Jin Y-K, Bennetzen JL (1994) Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize. Plant Cell 6: 1177-1186.
19. Juretic N, Hoen DR, Huynh ML, Harrison PM, Bureau TE (2005) The evolutionary fate of MULE-mediated duplications of host gene fragments in rice. Genome Res 15: 1292-1297.
20. Kashkush K, Khasdan V (2007) Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes. Genetics 177: 1975-1985.
21. Kashkush K, Feldman M, Levy AA (2003) Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat Genet 33: 102-106.
22. Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugen 12: 172-175.
23. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
24. Laspina NV, Vega T, Martelotto L, Stein J, Podio M, Ortiz JP, Echenique V, Quarin C, Pessino SC (2008) Gene expression analysis at the onset of aposporous apomixes in immature inflorecences of Paspalum notatum. Plant Mol Biol 67: 615-628.
25. Liang P, Pardee AB (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257: 967-971.
26. Malik HS, Henikoff S, Eickbush TH (2000) Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses. Genome Res 10: 1307-1318.
27. Martínez EJ, Hopp E, Stein J, Ortiz JPA, Quarin CL (2003) Genetic characterization of apospory in tetraploid Paspalum notatum based on the identification of linked molecular markers. Mol Breed 12(4): 319-327.
28. Morgante M, Brunner S, Pea G, Fengler K, Zuccolo A, Rafalski A (2005) Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nat Genet 37: 997-1002.
29. Nogler GA (1984) Gametophytic apomixis. In: Johri BM (ed) Embriology of angiosperms. Springer, New York, pp 475-518.
30. Olmedo-Monfil V, Durán-Figueroa N, Arteaga-Vázquez M, Demesa-Arévalo E, Autran D, Grimanelli D, Slotkin RK, Martienssen RA, Vielle-Calzada JP (2010) Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature 464: 628-632. doi: 10. 1038/nature08828.
31. Ortiz JP, Pessino SC, Leblanc B, Hayward MD, Quarin CL (1997) Genetic fingerprint for determinig the mode of reproduction in Paspalum notatum, a subtropical apomictic forage grass. Theor Appl Genet 95: 850-856.
32. Ouyang S, Buell CR (2004) The TIGR plant repeat databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res 32: D360-D363.
33. Pessino S, Martelotto L (2006) Genome structure and gene expression in polyploid plants. In: Teixeira da Silva JA (ed) Floriculture, ornamentals and plant biotechnology: advances and topical issues, 1st edn. Global Science Books, London, UK.
34. Polegri L, Calderini O, Arcioni S, Pupilli F (2010) Specific expression of apomixis-linked alleles revealed by comparative transcriptomic analysis of sexual and apomictic Paspalum simplex Morong flowers. J Exp Bot 61: 1869-1883.
35. Quarin CL, Norrmann GA, Urbani MH (1989) Polyploidization in aposporous Paspalum species. Apomixis Newsletter 1: 28-29.
36. Quarin CL, Espinoza F, Martinez EJ, Pessino SC, Novo OA (2001) A rice of ploidy level induces the expression of apomixis in Paspalum notatum. Sex Plant Reprod 13: 243-249.
37. Quarin CL, Urbani MH, Blount AR, Martinez EJ, Hack CM, Burton GW, Quesenberry KH (2003) Registration of Q4188 and Q4205, sexual tetraploid germplasm lines of Bahiagrass. Crop Sci 43: 745-746.
38. Rodrigues JC, Cabral GB, Dusi DMA, Mello LV, Rinden D, Carneiro VTC (2003) Identification of differentially expressed cDNA sequences in ovaries of sexual and apomictic plants of Brachiaria brizantha. Plant Mol Biol 53: 745-757.
39. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning. A laboratory manual, 2nd edn. Cold Spring Harbour Press, New York.
40. Shagai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81: 8014-8018.
41. Spillane C, Curtis MD, Grossniklaus U (2004) Apomixis technology development-virgin births in farmers' fields? Nat Biotechnol 22: 687-691.
42. Stein J, Pessino SC, Martinez E, Quarin CL, Ortiz JP (2004) Tetraploid races of Paspalum notatum showed polysomic inheritance and preferential chromosome pairing around the apospory-controlling locus. Theor Appl Genet 109: 186-191.
43. Stein J, Pessino S, Martinez E, Rodríguez MP, Siena L, Quarin C, Ortiz JP (2007) A genetic map of tetraploid Paspalum notatum Flügge (bahiagrass) based on single-dose molecular markers. Mol Breeding 20: 153-166.
44. Tischler CR, Burson BL (1995) Evaluating different bahiagrass cytotypes for heat tolerance and leaf epicuticular wax content. Euphytica 84: 229-235.
45. Tsukahara S, Kobayashi A, Kawabe A, Mathieu O, Miura A, Kakutani T (2009) Burst of retrotransposition reproduced in Arabidopsis. Nature 461: 423-426.
46. Yamada-Akiyama H, Akiyama Y, Ebina M, Xu Q, Tsuruta S, Yazaki J, Kishimoto N, Kikuchi S, Takahara M, Takamizo T, Sugita S, Nakagawa H (2009) Analysis of expressed sequence tags in apomictic Guinea grass (Panicum maximum). J Plant Physiol 166: 750-761.
47. Yang L, Bennetzen JL (2009) Distribution, diversity, evolution, and survival of Helitrons in the maize genome. PNAS 106(47): 19922-19927.