Molecular biodiversity of arbuscular mycorrhizal fungi in trace metal-polluted soils

Molecular Ecology

Volumn 20, Issue 16, 2011, Pages 3469-3483

  Hassan, Saad El Din ^a,b   Boon, Eva ^a   St Arnaud, Marc ^a   Hijri, Mohamed ^a  

^a UNIVERSITÉ DE MONTRÉAL   (Canada)

^b Assiut Branch   (Egypt)

Author keywords

arbuscular mycorrhizal fungi; biodiversity; cloning and sequencing; PCR and denaturing gradient gel electrophoresis; polluted soils; trace metals

Indexed keywords

RNA 18S; TRACE ELEMENT;

ARTICLE; BIODIVERSITY; BIOTA; CANADA; DENATURING GRADIENT GEL ELECTROPHORESIS; DRUG EFFECT; GENETICS; GLOMEROMYCOTA; MICROBIOLOGY; MOLECULAR GENETICS; MYCORRHIZA; NUCLEOTIDE SEQUENCE; PLANT ROOT; PLANTAGO; RHIZOSPHERE; RIBOTYPING; SOIL POLLUTANT;

BIODIVERSITY; BIOTA; DENATURING GRADIENT GEL ELECTROPHORESIS; GLOMEROMYCOTA; MOLECULAR SEQUENCE DATA; MYCORRHIZAE; PLANT ROOTS; PLANTAGO; QUEBEC; RHIZOSPHERE; RIBOTYPING; RNA, RIBOSOMAL, 18S; SOIL MICROBIOLOGY; SOIL POLLUTANTS; TRACE ELEMENTS;

ARBUSCULAR; FUNGI; GLOMUS; GLOMUS ETUNICATUM; GLOMUS MOSSEAE; GLOMUS VISCOSUM; PLANTAGO; PLANTAGO MAJOR; SCUTELLOSPORA AURIGLOBA;

EID: 80051666188     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2011.05142.x     Document Type: Article

References (55)

1. Appoloni S, Lekberg Y, Tercek M, Zabinski C, Redecker D, (2008) Molecular community analysis of arbuscular mycorrhizal fungi in roots of geothermal soils in Yellowstone National Park (USA). Microbial Ecology, 56, 649-659.
2. Audet P, Charest C, (2008) Allocation plasticity and plant-metal partitioning: meta-analytical perspectives in phyto-remediation. Environmental Pollution, 156, 290-296.
3. Beaulien M, Drouin R, (1999) Politique de protection des sols et de réhabilitation des terrains contaminés, 120 pp. Québec Environment Ministry, Les Publications du Québec, Ste-Foy.
4. Boon E, Zimmerman E, Lang BF, Hijri M, (2010) Intra-isolate genome variation in arbuscular mycorrhizal fungi persists in the transcriptome. Journal of Evolutionary Biology, 23, 1519-1527.
5. Colwell RK, (2009) EstimateS: statistical estimation of species richness and shared species from samples. Version 8.2. User's Guide and application published at:.
6. Corradi N, Croll D, Colard A, et al. (2007) Gene copy number polymorphisms in an arbuscular mycorrhizal fungal population. Applied and Environmental Microbiology, 73, 366-369. (Pubitemid 46079976)
7. Daniell TJ, Husband R, Fitter AH, Young JPW, (2001) Molecular diversity of arbuscular mycorrhizal fungi colonising arable crops. FEMS Microbiology Ecology, 36, 203-209. (Pubitemid 32635242)
8. Del Val C, Barea JM, Azcon-Aguilar C, (1999) Diversity of arbuscular mycorrhizal fungus populations in heavy-metal-contaminated soils. Applied and Environmental Microbiology, 65, 718-723. (Pubitemid 29075121)
9. Göhre V, Paszkowski U, (2006) Contribution of the arbuscular mycorrhizal symbiosis to heavy metal phytoremediation. Planta, 223, 1115-1122.
10. Gonzalez-Chavez C, Harris PJ, Dodd J, Meharg AA, (2002) Arbuscular mycorrhizal fungi confer enhanced arsenate resistance on Holcus lanatus. New Phytologist, 155, 163-177.
11. Gremion F, Chatzinotas A, Kaufmann K, Sigler W, Harms H, (2004) Impacts of heavy metal contamination and phytoremediation on a microbial community during a twelve-month microcosm experiment. FEMS Microbiology Ecology, 48, 273-283. (Pubitemid 38553970)
12. Guindon SP, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704. (Pubitemid 37365050)
13. Hall JL, (2002) Cellular mechanisms for heavy metal detoxification and tolerance. Journal of Experimental Botany, 53, 1-11. (Pubitemid 34043136)
14. Helgason T, Daniell TJ, Husband R, Fitter AH, Young JPW, (1998) Ploughing up the wood-wide web? Nature, 394, 431.
15. Hendershot WH, Lalande H, Reyes D, MacDonald D, (2008) Trace element assessment In: Soil Sampling and Methods of Analysis (eds, Carter M, Gregorich E,), pp. 109-119. CRC Press, Boca Raton, FL.
16. Hijri M, Hosny M, van Tuinen D, Dulieu H, (1999) Intraspecific ITS polymorphism in Scutellospora castanea (Glomales, Zygomycota) is structured within multinucleate spores. Fungal Genetics and Biology, 26, 141-151. (Pubitemid 29412685)
17. Jarup L, (2003) Hazards of heavy metal contamination. British Medical Bulletin, 68, 167-182. (Pubitemid 38248496)
18. Kaldorf M, Kuhn AJ, Schröder WH, Hildebrandt U, Bothe H, (1999) Selective element deposits in maize colonized by a heavy metal tolerance conferring arbuscular mycorrhizal fungus. Journal of Plant Physiology, 154, 718-728. (Pubitemid 29365436)
19. Kowalchuk GA, de Souza FA, van Veen JA, (2002) Community analysis of arbuscular mycorrhizal fungi associated with Ammophila arenaria in Dutch coastal sand dunes. Molecular Ecology, 11, 571-581. (Pubitemid 34234378)
20. Kuhn G, Hijri M, Sanders IR, (2001) Evidence for the evolution of multiple genomes in arbuscular mycorrhizal fungi. Nature, 414, 745-748. (Pubitemid 34000770)
21. Lázaro JD, Kidd PS, Martínez CM, (2006) A phytogeochemical study of the Trás-os Montes region (NE Portugal): possible species for plant-based soil remediation technologies. Science of the Total Environment, 354, 265-277.
22. Lee J, Lee S, Young JPW, (2008) Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi. FEMS Microbiology Ecology, 65, 339-349. (Pubitemid 351989235)
23. Liang Z, Drijber RA, Lee DJ, et al. (2008) A DGGE-cloning method to characterize arbuscular mycorrhizal community structure in soil. Soil Biology and Biochemistry, 40, 956-966.
24. Lingua G, Franchin C, Todeschini V, et al. (2008) Arbuscular mycorrhizal fungi differentially affect the response to high zinc concentrations of two registered poplar clones. Environmental Pollution, 153, 137-147. (Pubitemid 351509659)
25. Öpik M, Moora M, Liira J, et al. (2003) Divergent arbuscular mycorrhizal fungal communities colonize roots of Pulsatilla spp. in boreal Scots pine forest and grassland soils. New Phytologist, 160, 581-593. (Pubitemid 37502486)
26. Orlowska E, Zubek S, Jurkiewicz A, Szarek-Lukaszewska G, Turnau K, (2002) Influence of restoration on arbuscular mycorrhiza of Biscutella laevigata L. (Brassicaceae) and Plantago lanceolata L. (Plantaginaceae) from calamine spoil mounds. Mycorrhiza, 12, 153-160. (Pubitemid 36053099)
27. Orlowska E, Ryszka P, Jurkiewicz A, Turnau K, (2005) Effectiveness of arbuscular mycorrhizal fungal (AMF) strains in colonisation of plants involved in phytostabilisation of zinc wastes. Geoderma, 129, 92-98. (Pubitemid 41375836)
28. Pawlowska TE, Charvat I, (2004) Heavy-metal stress and developmental patterns of arbuscular mycorrhizal fungi. Applied and Environmental Microbiology, 70, 6643-6649. (Pubitemid 39518574)
29. Pawlowska TE, Błaszkowski J, Rühling Å, (1997) The mycorrhizal status of plants colonizing a calamine spoil mound in southern Poland. Mycorrhiza, 6, 499-505. (Pubitemid 126699143)
30. Pilon-Smits E, (2005) Phytoremediation. Annual Review of Plant Biology, 56, 15-39. (Pubitemid 40802402)
31. Posada D, (2008) jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253-1256. (Pubitemid 351882013)
32. Renker C, Blanke V, Buscot F, (2005) Diversity of arbuscular mycorrhizal fungi in grassland spontaneously developed on area polluted by a fertilizer plant. Environmental Pollution, 135, 255-266. (Pubitemid 40269832)
33. Rillig MC, Steinberg PD, (2002) Glomalin production by an arbuscular mycorrhizal fungus: a mechanism of habitat modification. Soil Biology and Biochemistry, 34, 1371-1374. (Pubitemid 34915428)
34. Rosenzweig M, (1995) Species Diversity in Space and Time. Cambridge University Press, Princeton, NJ.
35. Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R, (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497. (Pubitemid 38016658)
36. Santos-Gonzalez JC, Finlay RD, Tehler A, (2007) Seasonal dynamics of arbuscular mycorrhizal fungal communities in roots in a seminatural grassland. Applied and Environmental Microbiology, 73, 5613-5623. (Pubitemid 47378768)
37. Schüßler A, Walker C, (2010) The Glomeromycota: a species list with new families and new genera. Schüßler A, Walker C, Gloucester; published in libraries at Royal Botanic Garden, Edinburgh, Kew, Botanische Staatssammlung, Munich, and Oregon State University.
38. Schützendübel A, Polle A, (2002) Plant responses to abiotic stresses: heavy metal-induced oxidative stress and protection by mycorrhization. Journal of Experimental Botany, 53, 1351-1365. (Pubitemid 34544055)
39. Simon L, Lalonde M, Bruns TD, (1992) Specific amplification of 18S fungal ribosomal genes from vesicular-arbuscular endomycorrhizal fungi colonizing roots. Applied and Environmental Microbiology, 58, 291-295.
40. Smith SE, Read DJ, (2008) Mycorrhizal Symbiosis, 3rd edn. Academic Press, London.
41. Sokolski S, Dalpé Y, Séguin S, Khasa D, Lévesque CA, Piché Y, (2010) Conspecificity of DAOM 197198, the model arbuscular mycorrhizal fungus, with Glomus irregulare: molecular evidence with three protein-encoding genes. Botany, 88, 829-838.
42. St-Arnaud M, Vujanovic V, (2007) Effect of the arbuscular mycorrhizal symbiosis on plant diseases and pests. In: Mycorrhizae in Crop Production (eds, Hamel C, Plenchette C,), pp. 67-122. Haworth Press, Binghampton, NY.
43. Sudová R, Doubková P, Vosátka M, (2008) Mycorrhizal association of Agrostis capillaris and Glomus intraradices under heavy metal stress: combination of plant clones and fungal isolates from contaminated and uncontaminated substrates. Applied Soil Ecology, 40, 19-29.
44. Talavera G, Castresana J, (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology, 56, 564-577. (Pubitemid 47171631)
45. Turnau K, Ryszka P, Van Tuinen D, Gianinazzi-Pearson V, (2001) Identification of arbuscular mycorrhizal fungi in soils and roots of plants colonizing zinc wastes in Southern Poland. Mycorrhiza, 10, 169-174. (Pubitemid 32106437)
46. Vallino M, Massa N, Lumini E, et al. (2006) Assessment of arbuscular mycorrhizal fungal diversity in roots of Solidago gigantea growing in a polluted soil in Northern Italy. Environmental Microbiology, 8, 971-983. (Pubitemid 43901764)
47. Vandenkoornhuyse P, Husband R, Daniell TJ, et al. (2002) Arbuscular mycorrhizal community composition associated with two plant species in a grassland ecosystem. Molecular Ecology, 11, 1555-1564.
48. Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ, (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.
49. White TJ, Bruns TD, Lee SB, Taylor JW, (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: A Guide to Methods and Applications (eds, Innis MA, Gelfand DH, Sninsky JJ, White TJ,), pp. 315-322. Academic Press, San Diego, CA.
50. Wong CC, Wu SC, Kuek C, Khan AG, Wong MH, (2007) The role of mycorrhizae associated with vetiver grown in Pb-/Zn-contaminated soils: Greenhouse study. Restoration Ecology, 15, 60-67. (Pubitemid 46487163)
51. Wu FY, Ye ZH, Wong MH, (2009) Intraspecific differences of arbuscular mycorrhizal fungi in their impacts on arsenic accumulation by Pteris vittata L. Chemosphere, 76, 1258-1264.
52. Wu FY, Bi YL, Leung HM, et al. (2010) Accumulation of As, Pb, Zn, Cd and Cu and arbuscular mycorrhizal status in populations of Cynodon dactylon grown on metal-contaminated soils. Applied Soil Ecology, 44, 213-218.
53. Wubet T, Weiß M, Kottke I, Teketay D, Oberwinkler F, (2004) Molecular diversity of arbuscular mycorrhizal fungi in Prunus africana, an endangered medicinal tree species in dry Afromontane forests of Ethiopia. New Phytologist, 161, 517-528. (Pubitemid 38126963)
54. Yang R, Zan S, Tang J, Chen X, Zhang Q, (2010) Variation in community structure of arbuscular mycorrhizal fungi associated with a Cu tolerant plant-Elsholtzia splendens. Applied Soil Ecology, 44, 191-197.
55. Zarei M, König S, Hempel S, et al. (2008) Community structure of arbuscular mycorrhizal fungi associated to Veronica rechingeri at the Anguran zinc and lead mining region. Environmental Pollution, 156, 1277-1283.