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Volumn 62, Issue 2, 2011, Pages 374-382

Bacterioplankton Community Variation Across River to Ocean Environmental Gradients

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CHLOROPHYLL; CHLOROPHYLL A;

EID: 80051666138     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-011-9805-z     Document Type: Article
Times cited : (64)

References (51)
  • 2
    • 13844306978 scopus 로고    scopus 로고
    • Microbial community dynamics based on 16S rRNA gene profiles in a Pacific Northwest estuary and its tributaries
    • Bernhard AE, Colbert D, McManus J, Field KG (2005) Microbial community dynamics based on 16S rRNA gene profiles in a Pacific Northwest estuary and its tributaries. FEMS Microbiol Ecol 52: 115-128.
    • (2005) FEMS Microbiol Ecol , vol.52 , pp. 115-128
    • Bernhard, A.E.1    Colbert, D.2    McManus, J.3    Field, K.G.4
  • 3
    • 0036222111 scopus 로고    scopus 로고
    • Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries
    • Bouvier TC, PAd G (2002) Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries. Limnol Oceanogr 47: 453-470.
    • (2002) Limnol Oceanogr , vol.47 , pp. 453-470
    • Bouvier, T.C.1    Pad, G.2
  • 4
    • 17544390961 scopus 로고    scopus 로고
    • Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis
    • Casamayor EO, Schafer H, Baneras L, Pedros-Alio C, Muyzer G (2000) Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis. Appl Environ Microbiol 66: 499-508.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 499-508
    • Casamayor, E.O.1    Schafer, H.2    Baneras, L.3    Pedros-Alio, C.4    Muyzer, G.5
  • 6
    • 0027806622 scopus 로고
    • A method of linking multivariate community structure to environmental variables
    • Clarke KR, Ainsworth M (1993) A method of linking multivariate community structure to environmental variables. Mar Ecol Prog Ser 92: 205-219.
    • (1993) Mar Ecol Prog Ser , vol.92 , pp. 205-219
    • Clarke, K.R.1    Ainsworth, M.2
  • 7
    • 0034068899 scopus 로고    scopus 로고
    • Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
    • Cottrell MT, Kirchman DL (2000) Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl Environ Microbiol 66: 1692-1697.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1692-1697
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 8
    • 0542396668 scopus 로고    scopus 로고
    • Dominance of particle-attached bacteria in the Columbia River estuary, USA
    • Crump BC, Baross JA, Simenstad CA (1998) Dominance of particle-attached bacteria in the Columbia River estuary, USA. Aquat Microb Ecol 14: 7-18.
    • (1998) Aquat Microb Ecol , vol.14 , pp. 7-18
    • Crump, B.C.1    Baross, J.A.2    Simenstad, C.A.3
  • 9
    • 0032976388 scopus 로고    scopus 로고
    • Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean
    • Crump BC, Armbrust EV, Baross JA (1999) Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean. Appl Environ Microbiol 65: 3192-3204.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3192-3204
    • Crump, B.C.1    Armbrust, E.V.2    Baross, J.A.3
  • 10
    • 0034051905 scopus 로고    scopus 로고
    • Archaeaplankton in the Columbia River, its estuary and the adjacent coastal ocean, USA
    • Crump BC, Baross JA (2000) Archaeaplankton in the Columbia River, its estuary and the adjacent coastal ocean, USA. FEMS Microbiol Ecol 31: 231-239.
    • (2000) FEMS Microbiol Ecol , vol.31 , pp. 231-239
    • Crump, B.C.1    Baross, J.A.2
  • 11
    • 0242668350 scopus 로고    scopus 로고
    • Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source
    • Crump BC, Kling GW, Bahr M, Hobbie JE (2003) Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl Environ Microbiol 69: 2253-2268.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2253-2268
    • Crump, B.C.1    Kling, G.W.2    Bahr, M.3    Hobbie, J.E.4
  • 12
    • 1642376424 scopus 로고    scopus 로고
    • Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time
    • Crump BC, Hopkinson CS, Sogin ML, Hobbie JE (2004) Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time. Appl Environ Microbiol 70: 1494-1505.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1494-1505
    • Crump, B.C.1    Hopkinson, C.S.2    Sogin, M.L.3    Hobbie, J.E.4
  • 13
    • 28044457197 scopus 로고    scopus 로고
    • Synchrony and seasonality in bacterioplankton communities of two temperate rivers
    • Crump BC, Hobbie JE (2005) Synchrony and seasonality in bacterioplankton communities of two temperate rivers. Limnol Oceanogr 50: 1718-1729.
    • (2005) Limnol Oceanogr , vol.50 , pp. 1718-1729
    • Crump, B.C.1    Hobbie, J.E.2
  • 14
    • 35948938590 scopus 로고    scopus 로고
    • Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters
    • Crump BC, Peranteau C, Beckingham B, Cornwell JC (2007) Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters. Appl Environ Microbiol 73: 6802-6810.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 6802-6810
    • Crump, B.C.1    Peranteau, C.2    Beckingham, B.3    Cornwell, J.C.4
  • 15
    • 0033133556 scopus 로고    scopus 로고
    • Distribution of microbial assemblages in the Central Arctic Ocean Basin studied by PCR/DGGE: analysis of a large data set
    • Ferrari VC, Hollibaugh JT (1999) Distribution of microbial assemblages in the Central Arctic Ocean Basin studied by PCR/DGGE: analysis of a large data set. Hydrobiologia 401: 55-68.
    • (1999) Hydrobiologia , vol.401 , pp. 55-68
    • Ferrari, V.C.1    Hollibaugh, J.T.2
  • 19
    • 44749093790 scopus 로고
    • A suggested protocol for continuous flow analysis of seawater nutrients (phosphate, nitrate, nitrite, and silicic acid) in the WOCE Hydrographic Program and the Joint Global Ocean Fluxes Study
    • Revision 1, Nov. 1994
    • Gordon LI, Jennings JC, Ross AA, Krest JM (1994) A suggested protocol for continuous flow analysis of seawater nutrients (phosphate, nitrate, nitrite, and silicic acid) in the WOCE Hydrographic Program and the Joint Global Ocean Fluxes Study. WHP Office Report 91: Revision 1, Nov. 1994.
    • (1994) WHP Office Report , vol.91
    • Gordon, L.I.1    Jennings, J.C.2    Ross, A.A.3    Krest, J.M.4
  • 20
    • 44449118067 scopus 로고    scopus 로고
    • Microbial biogeography: from taxonomy to traits
    • Green JL, Bohannan BJM, Whitaker RJ (2008) Microbial biogeography: from taxonomy to traits. Science 320: 1039-1043.
    • (2008) Science , vol.320 , pp. 1039-1043
    • Green, J.L.1    Bohannan, B.J.M.2    Whitaker, R.J.3
  • 21
    • 2942556578 scopus 로고    scopus 로고
    • Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia
    • Hewson I, Fuhrman JA (2004) Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia. Appl Environ Microbiol 70: 3425-3433.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3425-3433
    • Hewson, I.1    Fuhrman, J.A.2
  • 22
    • 33744961963 scopus 로고    scopus 로고
    • Influence of Amazon and Orinoco offshore surface water plumes on oligotrophic bacterioplankton diversity in the west tropical Atlantic
    • Hewson I, Capone DG, Steele JA, Fuhrman JA (2006) Influence of Amazon and Orinoco offshore surface water plumes on oligotrophic bacterioplankton diversity in the west tropical Atlantic. Aquat Microb Ecol 43: 11-22.
    • (2006) Aquat Microb Ecol , vol.43 , pp. 11-22
    • Hewson, I.1    Capone, D.G.2    Steele, J.A.3    Fuhrman, J.A.4
  • 23
    • 33646785416 scopus 로고    scopus 로고
    • Temporal and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters
    • Hewson I, Steele JA, Capone DG, Fuhrman JA (2006) Temporal and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters. Mar Ecol Prog Ser 311: 67-77.
    • (2006) Mar Ecol Prog Ser , vol.311 , pp. 67-77
    • Hewson, I.1    Steele, J.A.2    Capone, D.G.3    Fuhrman, J.A.4
  • 24
    • 0001626731 scopus 로고
    • Patterns and processes of shelf ecosystems and slope circulation
    • M. R. Landry and B. M. Hickey (Eds.), Amsterdam: Elsevier
    • Hickey BM (1989) Patterns and processes of shelf ecosystems and slope circulation. In: Landry MR, Hickey BM (eds) Coastal oceanography of Washington and Oregon. Elsevier, Amsterdam, pp 41-115.
    • (1989) Coastal Oceanography of Washington and Oregon , pp. 41-115
    • Hickey, B.M.1
  • 25
    • 0032523653 scopus 로고    scopus 로고
    • The Columbia River plume study: subtidal variability in the velocity and salinity fields
    • Hickey BM, Pietrafesa LJ, Jay DA, Boicourt WC (1998) The Columbia River plume study: subtidal variability in the velocity and salinity fields. J Geophys Res Oceans 103: 10339-10368.
    • (1998) J Geophys Res Oceans , vol.103 , pp. 10339-10368
    • Hickey, B.M.1    Pietrafesa, L.J.2    Jay, D.A.3    Boicourt, W.C.4
  • 26
    • 0142134058 scopus 로고    scopus 로고
    • Oceanography of the US Pacific Northwest Coastal Ocean and estuaries with application to coastal ecology
    • Hickey BM, Banas NS (2003) Oceanography of the US Pacific Northwest Coastal Ocean and estuaries with application to coastal ecology. Estuaries 26: 1010-1031.
    • (2003) Estuaries , vol.26 , pp. 1010-1031
    • Hickey, B.M.1    Banas, N.S.2
  • 27
    • 70949096994 scopus 로고    scopus 로고
    • Why is the northern end of the California Current System so productive?
    • Hickey BM, Banas NS (2008) Why is the northern end of the California Current System so productive? Oceanography 21: 90-107.
    • (2008) Oceanography , vol.21 , pp. 90-107
    • Hickey, B.M.1    Banas, N.S.2
  • 30
    • 3242816323 scopus 로고    scopus 로고
    • Toxic and nontoxic microcystis colonies in natural populations can be differentiated on the basis of rRNA gene internal transcribed spacer diversity
    • Janse I, Kardinaal WEA, Meima M, Fastner J, Visser PM, Zwart G (2004) Toxic and nontoxic microcystis colonies in natural populations can be differentiated on the basis of rRNA gene internal transcribed spacer diversity. Appl Environ Microbiol 70: 3979-3987.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3979-3987
    • Janse, I.1    Kardinaal, W.E.A.2    Meima, M.3    Fastner, J.4    Visser, P.M.5    Zwart, G.6
  • 31
    • 33644631616 scopus 로고    scopus 로고
    • Temporal variation and detection limit of an estuarine bacterioplankton community analyzed by denaturing gradient gel electrophoresis (DGGE)
    • Kan J, Wang K, Chen F (2006) Temporal variation and detection limit of an estuarine bacterioplankton community analyzed by denaturing gradient gel electrophoresis (DGGE). Aquat Microb Ecol 42: 7-18.
    • (2006) Aquat Microb Ecol , vol.42 , pp. 7-18
    • Kan, J.1    Wang, K.2    Chen, F.3
  • 32
    • 62249199075 scopus 로고    scopus 로고
    • Tempo-spatial patterns of bacterial community composition in the western North Pacific Ocean
    • Kataoka T, Hodoki Y, Suzuki K, Saito H, Higashi S (2009) Tempo-spatial patterns of bacterial community composition in the western North Pacific Ocean. J Mar Syst 77: 197-207.
    • (2009) J Mar Syst , vol.77 , pp. 197-207
    • Kataoka, T.1    Hodoki, Y.2    Suzuki, K.3    Saito, H.4    Higashi, S.5
  • 35
    • 28844469011 scopus 로고    scopus 로고
    • On the spatial structure of coastal circulation off Newport, Oregon, during spring and summer 2001 in a region of varying shelf width
    • Kosro PM (2005) On the spatial structure of coastal circulation off Newport, Oregon, during spring and summer 2001 in a region of varying shelf width. J Geophys Res-Oceans 110(C10S06): 1-16.
    • (2005) J Geophys Res-Oceans , vol.110 , Issue.C10S06 , pp. 1-16
    • Kosro, P.M.1
  • 36
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • Lauber CL, Hamady M, Knight R, Fierer N (2009) Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75: 5111-5120.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 38
    • 0035814250 scopus 로고    scopus 로고
    • Microscale patchiness of bacterioplankton assemblage richness in seawater
    • Long RA, Azam F (2001) Microscale patchiness of bacterioplankton assemblage richness in seawater. Aquat Microb Ecol 26: 103-113.
    • (2001) Aquat Microb Ecol , vol.26 , pp. 103-113
    • Long, R.A.1    Azam, F.2
  • 39
    • 34547433545 scopus 로고    scopus 로고
    • Global patterns in bacterial diversity
    • Lozupone CA, Knight R (2007) Global patterns in bacterial diversity. Proc Natl Acad Sci 104: 11436-11440.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 11436-11440
    • Lozupone, C.A.1    Knight, R.2
  • 41
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal-RNA
    • Muyzer G, Dewaal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal-RNA. Appl Environ Microbiol 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    Dewaal, E.C.2    Uitterlinden, A.G.3
  • 43
    • 0032769414 scopus 로고    scopus 로고
    • Bacterial community composition during two consecutive NE Monsoon periods in the Arabian Sea studied by denaturing gradient gel electrophoresis (DGGE) of rRNA genes
    • Riemann L, Steward GF, Fandino LB, Campbell L, Landry MR, Azam F (1999) Bacterial community composition during two consecutive NE Monsoon periods in the Arabian Sea studied by denaturing gradient gel electrophoresis (DGGE) of rRNA genes. Deep Sea Res Part II Top Stud Oceanogr 46: 1791-1811.
    • (1999) Deep Sea Res Part II Top Stud Oceanogr , vol.46 , pp. 1791-1811
    • Riemann, L.1    Steward, G.F.2    Fandino, L.B.3    Campbell, L.4    Landry, M.R.5    Azam, F.6
  • 44
    • 0037461960 scopus 로고    scopus 로고
    • Composition and dynamics of particle-associated and free-living bacterial communities in the Weser estuary, Germany
    • Selje N, Simon M (2003) Composition and dynamics of particle-associated and free-living bacterial communities in the Weser estuary, Germany. Aquat Microb Ecol 30: 221-237.
    • (2003) Aquat Microb Ecol , vol.30 , pp. 221-237
    • Selje, N.1    Simon, M.2
  • 45
    • 0035374573 scopus 로고    scopus 로고
    • Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir
    • Simek K, Pernthaler J, Weinbauer MG, Hornak K, Dolan JR, Nedoma J, Masin M, Amann R (2001) Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl Environ Microbiol 67: 2723-2733.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2723-2733
    • Simek, K.1    Pernthaler, J.2    Weinbauer, M.G.3    Hornak, K.4    Dolan, J.R.5    Nedoma, J.6    Masin, M.7    Amann, R.8
  • 46
    • 0024228435 scopus 로고
    • A high-temperature catalytic oxidation method for the determination of non-volatile dissolved organic carbon in seawater by direct injection of a liquid sample
    • Sugimura Y, Suzuki Y (1988) A high-temperature catalytic oxidation method for the determination of non-volatile dissolved organic carbon in seawater by direct injection of a liquid sample. Mar Chem 24: 105-131.
    • (1988) Mar Chem , vol.24 , pp. 105-131
    • Sugimura, Y.1    Suzuki, Y.2
  • 48
    • 0019431710 scopus 로고
    • The simultaneous analysis of total nitrogen and total phosphorus in natural waters
    • Valderrama JC (1981) The simultaneous analysis of total nitrogen and total phosphorus in natural waters. Mar Chem 10: 109-122.
    • (1981) Mar Chem , vol.10 , pp. 109-122
    • Valderrama, J.C.1


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