Isolation and Characterization of Beneficial Bacteria Associated with Citrus Roots in Florida

Microbial Ecology

Volumn 62, Issue 2, 2011, Pages 324-336

  Trivedi, Pankaj ^a   Spann, Timothy ^a   Wang, Nian ^a  

^a UNIVERSITY OF FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

8 AZIDOETHIDIUM; 8-AZIDOETHIDIUM; ANTIINFECTIVE AGENT; AZIDE; BACTERIAL PROTEIN; CHITINASE; INDOLEACETIC ACID; INDOLEACETIC ACID DERIVATIVE; RNA 16S; SIDEROPHORE;

ARTICLE; BACTERIUM; BIOLOGICAL CONTROL AGENT; BIOSYNTHESIS; CHEMISTRY; CROP; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; NITROGEN FIXATION; PLANT DISEASE; PLANT ROOT; POLYMERASE CHAIN REACTION; SWEET ORANGE; UNITED STATES;

ANTI-BACTERIAL AGENTS; AZIDES; BACTERIA; BACTERIAL PROTEINS; BIOLOGICAL CONTROL AGENTS; CHITINASE; CITRUS SINENSIS; CROPS, AGRICULTURAL; FLORIDA; INDOLEACETIC ACIDS; NITROGEN FIXATION; PLANT DISEASES; PLANT ROOTS; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SIDEROPHORES; SOIL MICROBIOLOGY;

BACILLUS LICHENIFORMIS; BACTERIA (MICROORGANISMS); CANDIDATUS LIBERIBACTER ASIATICUS; CITRUS; MICROBACTERIUM OLEIVORANS; PAENIBACILLUS; PAENIBACILLUS VALIDUS; PSEUDOMONAS PUTIDA; SERRATIA;

EID: 80051665577     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-011-9822-y     Document Type: Article

References (60)

1. Andreote FD, Gullo MJM, Lima AOD, Maccheroni W Jr, Azevedo JL, Araujo WL (2004) Impact of genetically modified Enterobacter cloacae on indigenous endophytic community of Citrus sinensis seedlings. J Microbiol 42: 169-173.
2. Araújo WL, Marcon J, Maccheroni W, van Elsas JD, van Vuurde JWL, Azevedo JL (2002) Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl Environ Microbiol 68: 4906-4914.
3. Bauer WD, Mathesius U, Teplitski M (2005) Eukaryotes deal with bacterial quorum sensing. ASM News 71: 129-135.
4. Berg G, Roskot N, Steidle A, Eberl L, Zock A, Smalla K (2002) Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated from different Verticillium host plants. Appl Environ Microbiol 68: 3328-3338.
5. Bové JM (2006) Huanglongbing: a destructive, newly-emerging, century-old disease of citrus. J Plant Pathol 88: 7-37.
6. Brandl MT, Lindow SE (1998) Contribution of indole-3-acetic acid production to the epiphytic fitness of Erwinia herbicola. Appl Environ Microbiol 64: 3256-3263.
7. Cattelan AJ, Hartel PG, Fuhrmann JJ (1999) Screening of plant growth-promoting rhizobacteria to promote early soybean growth. Soil Sci Soc Am J 63: 1670-1680.
8. Chelius MK, Triplett EW (2001) The diversity of archaea and bacteria in association with the roots of Zea mays L. Microb Ecol 41: 252-263.
9. Choudhary DK, Johri BN (2008) Interaction of Bacillus spp. and plants-with special reference to induced systemic resistance (ISR). Microbiol Res 164: 493-513.
10. Eberl L (1999) N-acyl homoserinelactone-mediated gene regulation in gram-negative bacteria. Syst Appl Microbiol 22: 493-506.
11. Emmert EAB, Handelsman J (1999) Biocontrol of plant disease: a (Gram-) positive perspective. FEMS Microbiol Lett 171: 1-9.
12. Estrada-De Los Santos P, Bustillos-Cristales R, Caballero-Mellado J (2001) Burkholderia, a genus rich in plant-associated nitrogen fixers with wide environmental and geographic distribution. Appl Environ Microbiol 67: 2790-2798.
13. Etxeberria E, Gonzalez P, Achor D, Albrigo G (2009) Anatomical distribution of abnormally high levels of starch in HLB-affected Valencia orange trees. Physiol Mol Plant Pathol 74: 76-83.
14. Frey-Klett P, Chavatte M, Clausse ML, Courrier S, Le Roux C, Raaijmakers J, Martinotti MG, Pierrat JC, Garbaye J (2005) Ectomycorrhizal symbiosis affects functional diversity of rhizosphere fluorescent pseudomonads. New Phytol 165: 317-328.
15. Garbeva P, Postma J, vanVeen JA, vanElsas JD (2006) Effect of above-ground plant species on soil microbial community structure and its impact on suppression of Rhizoctonia solani AG3. Environ Microbiol 8: 233-246.
16. Gardner JM, Chandler JA, Feldman AW (1985) Growth response and vascular plugging of citrus inoculated with rhizobacteria and xylem-resident bacteria. Plant Soil 86: 996-1000.
17. Gottwald TR (2010) Current epidemiological understanding of citrus Haunglongbing. Ann Rev Phytopathol 48: 119-139.
18. Hallman J, Quadt-Hallman A, Rodriuez-Kabana R, Kloepper JW (1998) Interactions between Meloidogyne incognita and endophytic bacteria in cotton and cucumber. Soil Biol Biochem 30: 925-937.
19. Idris R, Trifonova R, Puschenreiter M, Wenzel WW, Sessitsch A (2004) Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense. Appl Environ Microbiol 70: 2667-2677.
20. Kim JS, Sagaram US, Burns JK, Li JL, Wang N (2009) Response of sweet orange (Citrus sinensis) to 'Candidatus Liberibacter asiaticus' infection: microscopy and microarray analyses. Phytopathology 99: 50-57.
21. Kloepper JW (1991) Development of in vivo assays for prescreening antagonists of Rhizoctonia solani on cotton. Phythopathology 81: 1006-1013.
22. Kuklinsky-Sobral J, Araújo WL, Mendes R, Geraldi IO, Pizzirani-Kleiner AA, Azevedo JL (2004) Isolation and characterization of soybean-associated bacteria and their potential for plant growth promotion. Environ Microbiol 6: 1244-1251.
23. Kumar B, Trivedi P, Pandey A (2007) Pseudomonas corrugata: a suitable bioinoculant for maize grown under rainfed conditions of Himalayan region. Soil Biol Biochem 39: 3093-3100.
24. Lacava PT, Araújo WL, Marcon J, Maccheroni W Jr, Azevedo JL (2004) Interaction between endophytic bacteria from citrus plants and the phytopathogenic bacteria Xylella fastidiosa, causal agent of citrus-variegated chlorosis. Lett Appl Microbiol 39: 55-59.
25. Lacava PT, Azevedo JL, Miller T, Hartung JS (2009) Interactions of citrus variegated chlorosis (CVC) with endophytic bacteria. Tree Forestry Sci Biotechnol 3: 40-48.
26. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York, pp 115-147.
27. Lugtenberg B, Kamilova F (2009) Plant-growth-promoting rhizobacteria. Annu Rev Microbiol 63: 541-556.
28. McSpadden Gardener B (2007) Diversity and ecology of biocontrol Pseudomonas in agricultural systems. Phytopathology 97: 221-226.
29. McSpadden Gardener BB, Weller DM (2001) Changes in rhizosphere bacterium populations associated with take-all disease of wheat. Appl Environ Microbiol 67: 4414-4425.
30. Nagarajkumar M, Bhaskaran R, Velazhanan R (2004) Involvement of secondary metabolites and extracellular lytic enzymes produced by Pseudomonas fluorescens in inhibition of Rhizoctonia solani, the rice sheath blight pathogen. Microbiol Res 159: 73-81.
31. Nannipieri P, Ascher J, Ceccherini MT, Landi L, Pietramellara G, Renella G (2003) Microbial diversity and soil functions. Eur J Soil Sci 54: 655-670.
32. Nelson LM (2004) Plant growth promoting rhizobacteria (PGPR): prospects for new inoculants. Online. Crop Management. doi: 10. 1094/CM-2004-0301-05-RV.
33. O'Sullivan DJ, O'Gara F (1992) Traits of fluorescent Pseudomonas spp. involved in suppression of plant root pathogens. Microbiol Rev 56: 662-676.
34. Pandey A, Sharma E, Palni LMS (1998) Influence of bacterial inoculation on maize in upland farming systems of the Sikkim Himalaya. Soil Biol Biochem 30: 379-384.
35. Pattan CL, Glick BR (2002) Role of Pseudomonas putida indoleacetic acid in development of host plant root system. Appl Environ Microbiol 68: 3795-3801.
36. Pearson JP, Pesci EC, Iglewski BH (1997) Roles of Pseudomonas aeruginosa las and rhl quorum-sensing systems in control of elastase and rhamnolipid biosynthesis genes. J Bacteriol 179: 5756-5767.
37. Poonguzhali S, Madhaiyan M, Sa TM (2007) Quorum sensing signals produced by plant-growth promoting Burkolderia strains under in vitro and in planta conditions. Res Microbiol 158: 287-294.
38. Reiter B, Pfeifer U, Schwab H, Sessitsch A (2002) Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp. atroseptica. Appl Environ Microbiol 68: 2261-2268.
39. Rosenblueth M, Martínez-Romero E (2006) Bacterial endophytes and their interactions with hosts. Mol Plant-Microb Interact 19: 827-837.
40. Sagaram US, De Angelis KM, Trivedi P, Andersen GL, Lu SE, Wang N (2009) Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Appl Environ Microbiol 75: 1566-1574.
41. Schwyn B, Neilands JB (1987) Universal chemical assay for the detection and determination of siderophore. Anal Biochem 160: 47-56.
42. Sechler A, Schuenzel EL, Cooke P, Donnua S, Thaveechai N, Postnikova E, Stone AL, Schneider WL, Damsteegt VD, Schaad NW (2009) Cultivation of 'Candidatus Liberibacter asiaticus', 'Ca. L. africanus', and 'Ca. L. americanus' associated with huanglongbing. Phytopathology 99: 480-486.
43. Sessitsch A, Reiter B, Berg G (2004) Endophytic bacterial communities of field-grown potato plants and their plant growth-promoting abilities. Can J Microbiol 50: 239-249.
44. Shah S, Li J, Moffatt BA, Glick BR (1998) Isolation and characterization of ACC deaminase genes from two different plant growth-promoting rhizobacteria. Can J Microbiol 44: 833-843.
45. Shah S, Li J, Moffatt BA, Glick BR (1997) ACC deaminase genes from plant growth promoting rhizobacteria. In: Ogoshi A, Kobayashi K, Hemma Y, Kodema F, Kondo N, Akino S (eds) Plant growth-promoting rhizobacteria. Present status and future prospects. Organization for Economic Cooperation and Development, Paris, pp 320-324.
46. Simionato AVC, Simó C, Cifuentes A, Lacava PT, Araújo WL, Azevedo JL, Carrilho E (2006) Capillary electrophoresis-mass spectrometry of citrus endophytic bacteria siderophores. Electrophoresis 27: 2567-2574.
47. Stackebrandt E, Ebers J (2006) Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33: 152-155.
48. Sturz AV, Christie BR, Matheson BG, Arsenault WJ, Buchanan NA (1999) Endophytic bacterial communities in the periderm of potato tubers and their potential to improve resistance to soil-borne plant pathogens. Plant Pathol 48: 360-369.
49. Thomas P, Soly TA (2009) Endophytic bacteria associated with growing shoot tips of banana (Musa sp.) cv. Grand Naine and the affinity of endophytes to the host. Microb Ecol 58: 952-964.
50. Trivedi P, Pandey A, Palni LMS (2008) In vitro evaluation of antagonistic properties of Pseudomonas corrugata. Microbiol Res 163: 329-336.
51. Trivedi P, Sagaram US, Kim JS, Brlansky RH, Rogers ME, Stelinski LL, Oswalt C, Wang N (2009) Quantification of viable Candidatus Liberibacter asiaticus in hosts using quantitative PCR with the aid of ethidium monoazide (EMA). Eur J Plant Pathol 124: 553-563.
52. Trivedi P, Duan Y, Wang N (2010) Huanglongbing, a systemic disease, restructures the bacterial community associated with citrus roots. Appl Environ Microbiol 76: 3427-3436.
53. Ulrich K, Ulrich A, Ewald D (2008) Diversity of endophytic bacterial communities in poplar grown under field conditions. FEMS Microbiol Ecol 63: 169-180.
54. van Loon LC (2000) Systemic acquired resistance. In: Fraser RSS, van Loon LC, Slusarenko AJ (eds) Mechanisms of resistance to plant diseases. Kluwer, Dordrecht, pp 521-574.
55. Wang QG, Garrity M, Tiedje JM, Cole JR (2007) Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
56. Wang Z, Yin Y, Hu H, Yuan Q, Peng G, Xia Y (2006) Development and application of molecular-based diagnosis for 'Candidatus Liberibacter asiaticus', the causal pathogen of citrus huanglongbing. Plant Pathol 55: 630-638.
57. Widmer F, Shaffer BT, Porteous LA, Seidler RJ (1999) Analysis of nifH gene pool complexity in soil and litter at a Douglas fir forest site in the Oregon cascade mountain range. Appl Environ Microbiol 65: 374-380.
58. Yang C, Crowley DE, Menge JA (2001) 16 S rDNA fingerprinting of rhizosphere bacterial communities associated with healthy and Phytophthora infected avocado roots. FEMS Microbiol Ecol 35: 129-136.
59. Zehr JP, Jenkins BD, Short SM, Steward GF (2003) Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environ Microbiol 5: 539-554.
60. Zinniel DK, Lambrecht P, Harris NB, Feng Z, Kuczmarski D, Higley P, Ishimaru C, Arunakumari A, Barletta RG, Vidaver AK (2002) Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie plants. Appl Environ Microbiol 68: 2198-2208.