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Volumn 6, Issue 8, 2011, Pages

Strategy to find molecular signatures in a small series of rare cancers: Validation for Radiation-Induced breast and thyroid tumors

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TRANSCRIPTOME;

EID: 80051608665     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0023581     Document Type: Article
Times cited : (13)

References (36)
  • 1
    • 16244422362 scopus 로고    scopus 로고
    • Determination of tumour marker genes from gene expression data
    • Cuperlovic-Culf M, Belacel N, Ouellette RJ, (2005) Determination of tumour marker genes from gene expression data. Drug Discov Today 10: 429-437.
    • (2005) Drug Discov Today , vol.10 , pp. 429-437
    • Cuperlovic-Culf, M.1    Belacel, N.2    Ouellette, R.J.3
  • 2
    • 64049091474 scopus 로고    scopus 로고
    • Gene expression profiling in colorectal cancer using microarray technologies: results and perspectives
    • Nannini M, Pantaleo MA, Maleddu A, Astolfi A, Formica S, et al. (2009) Gene expression profiling in colorectal cancer using microarray technologies: results and perspectives. Cancer Treat Rev 35: 201-209.
    • (2009) Cancer Treat Rev , vol.35 , pp. 201-209
    • Nannini, M.1    Pantaleo, M.A.2    Maleddu, A.3    Astolfi, A.4    Formica, S.5
  • 3
    • 62349116490 scopus 로고    scopus 로고
    • Microarray methods to identify factors determining breast cancer progression: potentials, limitations, and challenges
    • van der Vegt B, de Bock GH, Hollema H, Wesseling J, (2009) Microarray methods to identify factors determining breast cancer progression: potentials, limitations, and challenges. Crit Rev Oncol Hematol 70: 1-11.
    • (2009) Crit Rev Oncol Hematol , vol.70 , pp. 1-11
    • van der Vegt, B.1    de Bock, G.H.2    Hollema, H.3    Wesseling, J.4
  • 4
    • 48549097899 scopus 로고    scopus 로고
    • Breast cancer stratification from analysis of micro-array data of micro-dissected specimens
    • Alexe G, Dalgin GS, Scanfeld D, Tamayo P, Mesirov JP, et al. (2007) Breast cancer stratification from analysis of micro-array data of micro-dissected specimens. Genome Inform 18: 130-140.
    • (2007) Genome Inform , vol.18 , pp. 130-140
    • Alexe, G.1    Dalgin, G.S.2    Scanfeld, D.3    Tamayo, P.4    Mesirov, J.P.5
  • 5
    • 0036489046 scopus 로고    scopus 로고
    • Comparison of discrimination methods for the classification of tumors using gene expression data
    • Dudoit S, Fridlyand J, Speed TP, (2002) Comparison of discrimination methods for the classification of tumors using gene expression data. J Am Stat Assoc 97: 77-87.
    • (2002) J Am Stat Assoc , vol.97 , pp. 77-87
    • Dudoit, S.1    Fridlyand, J.2    Speed, T.P.3
  • 6
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
    • Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, et al. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286: 531-537.
    • (1999) Science , vol.286 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3    Huard, C.4    Gaasenbeek, M.5
  • 7
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG, Tibshirani R, Chu G, (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 98: 5116-5121.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 8
    • 5144226423 scopus 로고    scopus 로고
    • Gene expression profiling of differentiated thyroid neoplasms: diagnostic and clinical implications
    • Chevillard S, Ugolin N, Vielh P, Ory K, Levalois C, et al. (2004) Gene expression profiling of differentiated thyroid neoplasms: diagnostic and clinical implications. Clin Cancer Res 10: 6586-6597.
    • (2004) Clin Cancer Res , vol.10 , pp. 6586-6597
    • Chevillard, S.1    Ugolin, N.2    Vielh, P.3    Ory, K.4    Levalois, C.5
  • 9
    • 37549031189 scopus 로고    scopus 로고
    • Classification algorithms for phenotype prediction in genomics and proteomics
    • Ressom HW, Varghese RS, Zhang Z, Xuan J, Clarke R, (2008) Classification algorithms for phenotype prediction in genomics and proteomics. Front Biosci 13: 691-708.
    • (2008) Front Biosci , vol.13 , pp. 691-708
    • Ressom, H.W.1    Varghese, R.S.2    Zhang, Z.3    Xuan, J.4    Clarke, R.5
  • 11
    • 21044434021 scopus 로고    scopus 로고
    • Absence of a specific radiation signature in post-Chernobyl thyroid cancers
    • Detours V, Wattel S, Venet D, Hutsebaut N, Bogdanova T, et al. (2005) Absence of a specific radiation signature in post-Chernobyl thyroid cancers. Br J Cancer 92: 1545-1552.
    • (2005) Br J Cancer , vol.92 , pp. 1545-1552
    • Detours, V.1    Wattel, S.2    Venet, D.3    Hutsebaut, N.4    Bogdanova, T.5
  • 12
    • 34548588388 scopus 로고    scopus 로고
    • Genome-wide gene expression profiling suggests distinct radiation susceptibilities in sporadic and post-Chernobyl papillary thyroid cancers
    • Detours V, Delys L, Libert F, Weiss Solis D, Bogdanova T, et al. (2007) Genome-wide gene expression profiling suggests distinct radiation susceptibilities in sporadic and post-Chernobyl papillary thyroid cancers. Br J Cancer 97: 818-825.
    • (2007) Br J Cancer , vol.97 , pp. 818-825
    • Detours, V.1    Delys, L.2    Libert, F.3    Weiss Solis, D.4    Bogdanova, T.5
  • 14
    • 35748952199 scopus 로고    scopus 로고
    • A gene expression bar code for microarray data
    • Zilliox MJ, Irizarry RA, (2007) A gene expression bar code for microarray data. Nat Methods 4: 911-913.
    • (2007) Nat Methods , vol.4 , pp. 911-913
    • Zilliox, M.J.1    Irizarry, R.A.2
  • 16
    • 0036364086 scopus 로고    scopus 로고
    • Singular value decomposition regression models for classification of tumors from microarray experiments
    • Ghosh D, (2002) Singular value decomposition regression models for classification of tumors from microarray experiments. Pac Symp Biocomput pp. 18-29.
    • (2002) Pac Symp Biocomput , pp. 18-29
    • Ghosh, D.1
  • 17
    • 18844398070 scopus 로고    scopus 로고
    • Permutation Methods: A Basis for Exact Inference
    • Ernst MD, (2004) Permutation Methods: A Basis for Exact Inference. Statist Sci 19: 676-685.
    • (2004) Statist Sci , vol.19 , pp. 676-685
    • Ernst, M.D.1
  • 18
    • 21444458033 scopus 로고    scopus 로고
    • Stress-specific signatures: expression profiling of p53 wild-type and -null human cells
    • Amundson SA, Do KT, Vinikoor L, Koch-Paiz CA, Bittner ML, et al. (2005) Stress-specific signatures: expression profiling of p53 wild-type and-null human cells. Oncogene 24: 4572-4579.
    • (2005) Oncogene , vol.24 , pp. 4572-4579
    • Amundson, S.A.1    Do, K.T.2    Vinikoor, L.3    Koch-Paiz, C.A.4    Bittner, M.L.5
  • 19
    • 35948971461 scopus 로고    scopus 로고
    • A multi-gene approach to differentiate papillary thyroid carcinoma from benign lesions: gene selection using support vector machines with bootstrapping
    • Fujarewicz K, Jarzab M, Eszlinger M, Krohn K, Paschke R, et al. (2007) A multi-gene approach to differentiate papillary thyroid carcinoma from benign lesions: gene selection using support vector machines with bootstrapping. Endocr Relat Cancer 14: 809-826.
    • (2007) Endocr Relat Cancer , vol.14 , pp. 809-826
    • Fujarewicz, K.1    Jarzab, M.2    Eszlinger, M.3    Krohn, K.4    Paschke, R.5
  • 20
    • 0002344794 scopus 로고
    • Bootstrap Methods: Another Look at the Jackknife
    • Efron B, (1979) Bootstrap Methods: Another Look at the Jackknife. Ann Statist 7: 1-26.
    • (1979) Ann Statist , vol.7 , pp. 1-26
    • Efron, B.1
  • 23
    • 18244397978 scopus 로고    scopus 로고
    • Gene expression in papillary thyroid carcinoma reveals highly consistent profiles
    • Huang Y, Prasad M, Lemon WJ, Hampel H, Wright FA, et al. (2001) Gene expression in papillary thyroid carcinoma reveals highly consistent profiles. Proc Natl Acad Sci U S A 98: 15044-15049.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 15044-15049
    • Huang, Y.1    Prasad, M.2    Lemon, W.J.3    Hampel, H.4    Wright, F.A.5
  • 24
    • 13944273001 scopus 로고    scopus 로고
    • Gene expression profile of papillary thyroid cancer: sources of variability and diagnostic implications
    • Jarzab B, Wiench M, Fujarewicz K, Simek K, Jarzab M, et al. (2005) Gene expression profile of papillary thyroid cancer: sources of variability and diagnostic implications. Cancer Res 65: 1587-1597.
    • (2005) Cancer Res , vol.65 , pp. 1587-1597
    • Jarzab, B.1    Wiench, M.2    Fujarewicz, K.3    Simek, K.4    Jarzab, M.5
  • 25
    • 33750943691 scopus 로고    scopus 로고
    • Meta-analysis and meta-review of thyroid cancer gene expression profiling studies identifies important diagnostic biomarkers
    • Griffith OL, Melck A, Jones SJ, Wiseman SM, (2006) Meta-analysis and meta-review of thyroid cancer gene expression profiling studies identifies important diagnostic biomarkers. J Clin Oncol 24: 5043-5051.
    • (2006) J Clin Oncol , vol.24 , pp. 5043-5051
    • Griffith, O.L.1    Melck, A.2    Jones, S.J.3    Wiseman, S.M.4
  • 26
    • 0242361278 scopus 로고    scopus 로고
    • Predictive ability of DNA microarrays for cancer outcomes and correlates: an empirical assessment
    • Ntzani EE, Ioannidis JP, (2003) Predictive ability of DNA microarrays for cancer outcomes and correlates: an empirical assessment. Lancet 362: 1439-1444.
    • (2003) Lancet , vol.362 , pp. 1439-1444
    • Ntzani, E.E.1    Ioannidis, J.P.2
  • 27
    • 20144377712 scopus 로고    scopus 로고
    • An expression-based site of origin diagnostic method designed for clinical application to cancer of unknown origin
    • Tothill RW, Kowalczyk A, Rischin D, Bousioutas A, Haviv I, et al. (2005) An expression-based site of origin diagnostic method designed for clinical application to cancer of unknown origin. Cancer Res 65: 4031-4040.
    • (2005) Cancer Res , vol.65 , pp. 4031-4040
    • Tothill, R.W.1    Kowalczyk, A.2    Rischin, D.3    Bousioutas, A.4    Haviv, I.5
  • 28
    • 33646349993 scopus 로고    scopus 로고
    • Classification of renal neoplasms based on molecular signatures
    • Yang XJ, Sugimura J, Schafernak KT, Tretiakova MS, Han M, et al. (2006) Classification of renal neoplasms based on molecular signatures. J Urol 175: 2302-2306.
    • (2006) J Urol , vol.175 , pp. 2302-2306
    • Yang, X.J.1    Sugimura, J.2    Schafernak, K.T.3    Tretiakova, M.S.4    Han, M.5
  • 29
    • 78651271261 scopus 로고    scopus 로고
    • The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes
    • McCall MN, Uppal K, Jaffee HA, Zilliox MJ, Irizarry RA, (2011) The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes. Nucleic Acids Res 39: D1011-1015.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1011-1015
    • McCall, M.N.1    Uppal, K.2    Jaffee, H.A.3    Zilliox, M.J.4    Irizarry, R.A.5
  • 30
    • 30944442241 scopus 로고    scopus 로고
    • The CHU-CRLCC-UNSA tumour/tissue bank of the Nice area
    • Hofman P, (2006) (The CHU-CRLCC-UNSA tumour/tissue bank of the Nice area). Med Sci (Paris) 22 Spec No 1: 21-25.
    • (2006) Med Sci (Paris) , vol.22 Spec , pp. 21-25
    • Hofman, P.1
  • 31
    • 79251475595 scopus 로고    scopus 로고
    • Gene expression signature discriminates sporadic from post-radiotherapy-induced thyroid tumors
    • Ory C, Ugolin N, Levalois C, Lacroix L, Caillou B, et al. (2011) Gene expression signature discriminates sporadic from post-radiotherapy-induced thyroid tumors. Endocr Relat Cancer 18: 193-206.
    • (2011) Endocr Relat Cancer , vol.18 , pp. 193-206
    • Ory, C.1    Ugolin, N.2    Levalois, C.3    Lacroix, L.4    Caillou, B.5
  • 32
    • 67650077096 scopus 로고    scopus 로고
    • Gene expression profiling of alpha-radiation-induced rat osteosarcomas: Identification of dysregulated genes involved in radiation-induced tumorigenesis of bone
    • Daino K, Ugolin N, Altmeyer-Morel S, Guilly MN, Chevillard S, (2009) Gene expression profiling of alpha-radiation-induced rat osteosarcomas: Identification of dysregulated genes involved in radiation-induced tumorigenesis of bone. Int J Cancer.
    • (2009) Int J Cancer
    • Daino, K.1    Ugolin, N.2    Altmeyer-Morel, S.3    Guilly, M.N.4    Chevillard, S.5
  • 33
    • 33746847084 scopus 로고    scopus 로고
    • An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes
    • Le Brigand K, Russell R, Moreilhon C, Rouillard JM, Jost B, et al. (2006) An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes. Nucleic Acids Res 34: e87.
    • (2006) Nucleic Acids Res , vol.34
    • Le Brigand, K.1    Russell, R.2    Moreilhon, C.3    Rouillard, J.M.4    Jost, B.5
  • 34
    • 12844264782 scopus 로고    scopus 로고
    • Blind source separation and the analysis of microarray data
    • Chiappetta P, Roubaud MC, Torresani B, (2004) Blind source separation and the analysis of microarray data. J Comput Biol 11: 1090-1109.
    • (2004) J Comput Biol , vol.11 , pp. 1090-1109
    • Chiappetta, P.1    Roubaud, M.C.2    Torresani, B.3
  • 35
    • 57349130111 scopus 로고    scopus 로고
    • A review of independent component analysis application to microarray gene expression data
    • Kong W, Vanderburg CR, Gunshin H, Rogers JT, Huang X, (2008) A review of independent component analysis application to microarray gene expression data. Biotechniques 45: 501-520.
    • (2008) Biotechniques , vol.45 , pp. 501-520
    • Kong, W.1    Vanderburg, C.R.2    Gunshin, H.3    Rogers, J.T.4    Huang, X.5
  • 36
    • 0034568109 scopus 로고    scopus 로고
    • Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns
    • RESEARCH0003
    • Hastie T, Tibshirani R, Eisen MB, Alizadeh A, Levy R, et al. (2000) 'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns. Genome Biol 1 (2): RESEARCH0003.
    • (2000) Genome Biol , vol.1 , Issue.2
    • Hastie, T.1    Tibshirani, R.2    Eisen, M.B.3    Alizadeh, A.4    Levy, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.