-
1
-
-
34848825637
-
Chromatin remodelling is a major source of coexpression of linked genes in yeast
-
Batada NN, Urrutia AO, Hurst LD. 2007. Chromatin remodelling is a major source of coexpression of linked genes in yeast. Trend Gene 23: 480-484.
-
(2007)
Trend Gene
, vol.23
, pp. 480-484
-
-
Batada, N.N.1
Urrutia, A.O.2
Hurst, L.D.3
-
2
-
-
53649094732
-
Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila
-
Blanco E, Pignatelli M, Beltran S, Punset A, Pérez-Lluch S, Serras F, Guigó R, Corominas M. 2008. Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila. Genome Biol 9: R134.
-
(2008)
Genome Biol
, vol.9
-
-
Blanco, E.1
Pignatelli, M.2
Beltran, S.3
Punset, A.4
Pérez-Lluch, S.5
Serras, F.6
Guigó, R.7
Corominas, M.8
-
3
-
-
0031718266
-
A comprehensive, high-resolution genomic transcript map of human skeletal muscle
-
Bortoluzzi S, et al. 1998. A comprehensive, high-resolution genomic transcript map of human skeletal muscle. Genome Res 8: 817-825.
-
(1998)
Genome Res
, vol.8
, pp. 817-825
-
-
Bortoluzzi, S.1
-
5
-
-
34548690542
-
Functional architecture and evolution of transcriptional elements that drive gene coexpression
-
Brown CD, Johnson DS, Sidow A. 2007. Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317: 1557-1560.
-
(2007)
Science
, vol.317
, pp. 1557-1560
-
-
Brown, C.D.1
Johnson, D.S.2
Sidow, A.3
-
6
-
-
2242464840
-
The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins
-
Dehal P, et al. 2002. The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins. Science 298: 2157-2167.
-
(2002)
Science
, vol.298
, pp. 2157-2167
-
-
Dehal, P.1
-
7
-
-
1842427830
-
The evolutionary dynamics of eukaryotic gene order
-
Hurst LD, Pál C, Lercher MJ. 2004. The evolutionary dynamics of eukaryotic gene order. Nat Rev Genet 5: 299-310.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 299-310
-
-
Hurst, L.D.1
Pál, C.2
Lercher, M.J.3
-
8
-
-
4544303883
-
Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: Towards a comprehensive understanding of gene networks
-
Imai KS, Hino K, Yagi K, Satoh N, Satou Y. 2004. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: Towards a comprehensive understanding of gene networks. Development 131: 4047-4058.
-
(2004)
Development
, vol.131
, pp. 4047-4058
-
-
Imai, K.S.1
Hino, K.2
Yagi, K.3
Satoh, N.4
Satou, Y.5
-
9
-
-
33744458441
-
Regulatory blueprint for a chordate embryo
-
Imai KS, Levine M, Satoh N., Satou Y. 2006. Regulatory blueprint for a chordate embryo. Science 312: 1183-1187.
-
(2006)
Science
, vol.312
, pp. 1183-1187
-
-
Imai, K.S.1
Levine, M.2
Satoh, N.3
Satou, Y.4
-
10
-
-
0038104857
-
Genomic gene clustering analysis of pathways in eukaryotes
-
Lee JM, Sonnhammer EL. 2003. Genomic gene clustering analysis of pathways in eukaryotes. Genome Res 13: 875-882.
-
(2003)
Genome Res
, vol.13
, pp. 875-882
-
-
Lee, J.M.1
Sonnhammer, E.L.2
-
11
-
-
33744492057
-
How many ways to make a chordate?
-
Lemaire P. 2006. How many ways to make a chordate? Science 312: 1145-1146.
-
(2006)
Science
, vol.312
, pp. 1145-1146
-
-
Lemaire, P.1
-
12
-
-
0036613754
-
Clustering of housekeeping genes provides a unified model of gene order in the human genome
-
Lercher MJ, Urrutia AO, Hurst LD. 2002. Clustering of housekeeping genes provides a unified model of gene order in the human genome. Nat Gene 31: 180-183.
-
(2002)
Nat Gene
, vol.31
, pp. 180-183
-
-
Lercher, M.J.1
Urrutia, A.O.2
Hurst, L.D.3
-
13
-
-
0037315946
-
Coexpression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genes
-
Lercher MJ, Blumenthal T, Hurst LD. 2003. Coexpression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genes. Genome Res 13: 238-243.
-
(2003)
Genome Res
, vol.13
, pp. 238-243
-
-
Lercher, M.J.1
Blumenthal, T.2
Hurst, L.D.3
-
14
-
-
3342939298
-
Clustered organization of reproductive genes in the C. elegane genome
-
Miller MA, Cutter AD, Yamamoto I, Ward S, Greenstein D. 2004. Clustered organization of reproductive genes in the C. elegane genome. Curr Biol 14: 1384-1390.
-
(2004)
Curr Biol
, vol.14
, pp. 1384-1390
-
-
Miller, M.A.1
Cutter, A.D.2
Yamamoto, I.3
Ward, S.4
Greenstein, D.5
-
15
-
-
33744938152
-
Identification of thirty-four transcripts expressed specifically in hemocytes of Ciona intestinalis and their expression profiles throughout the life cycle
-
Ogasawara M, Nakazawa N, Azumi K, Yamabe E, Satoh N, Satake M. 2006. Identification of thirty-four transcripts expressed specifically in hemocytes of Ciona intestinalis and their expression profiles throughout the life cycle. DNA Res 13: 25-35.
-
(2006)
DNA Res
, vol.13
, pp. 25-35
-
-
Ogasawara, M.1
Nakazawa, N.2
Azumi, K.3
Yamabe, E.4
Satoh, N.5
Satake, M.6
-
16
-
-
0036941308
-
Gene expression profiles in young adult Ciona intestinalis
-
Ogasawara M, Sasaki A, Metoki H, Shin-i T, Kohara Y, Satoh N, Satou Y. 2002. Gene expression profiles in young adult Ciona intestinalis. Dev Genes Evol 212: 173-185.
-
(2002)
Dev Genes Evol
, vol.212
, pp. 173-185
-
-
Ogasawara, M.1
Sasaki, A.2
Metoki, H.3
Shin-i, T.4
Kohara, Y.5
Satoh, N.6
Satou, Y.7
-
17
-
-
32244446124
-
Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans
-
Pauli F, Liu Y, Kim YA, Chen PJ, Kim SK. 2005. Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans. Development 133: 287-295.
-
(2005)
Development
, vol.133
, pp. 287-295
-
-
Pauli, F.1
Liu, Y.2
Kim, Y.A.3
Chen, P.J.4
Kim, S.K.5
-
19
-
-
45749086679
-
The amphioxus genome and the evolution of the chordate karyotype
-
Putnum NH, et al. 2008. The amphioxus genome and the evolution of the chordate karyotype. Nature 453: 1064-1071.
-
(2008)
Nature
, vol.453
, pp. 1064-1071
-
-
Putnum, N.H.1
-
20
-
-
0037194732
-
Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans
-
Roy PJ, Joshua M, Stuart JM, Lund J, Kim SK. 2002. Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans. Nature 418: 975-979.
-
(2002)
Nature
, vol.418
, pp. 975-979
-
-
Roy, P.J.1
Joshua, M.2
Stuart, J.M.3
Lund, J.4
Kim, S.K.5
-
21
-
-
0037677689
-
Ciona intestinalis An emerging model for whole-genome analysis
-
Satoh N, Satou Y, Davidson B, Levine M. 2003. Ciona intestinalis An emerging model for whole-genome analysis. Trends Genet 19: 376-381.
-
(2003)
Trends Genet
, vol.19
, pp. 376-381
-
-
Satoh, N.1
Satou, Y.2
Davidson, B.3
Levine, M.4
-
22
-
-
0037379619
-
The ascidian tadpole larva: Comparative molecular development and genomics
-
Satoh N. 2003. The ascidian tadpole larva: Comparative molecular development and genomics. Nat Rev Genet 4: 285-295.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 285-295
-
-
Satoh, N.1
-
23
-
-
63049135880
-
An aboral-dorsalization hypothesis for chordate origin
-
Satoh N. 2008. An aboral-dorsalization hypothesis for chordate origin. Genesis 46: 614-622.
-
(2008)
Genesis
, vol.46
, pp. 614-622
-
-
Satoh, N.1
-
24
-
-
63049131563
-
An advanced filter-feeder hypothesis for urchordate evolution
-
Satoh N. 2009. An advanced filter-feeder hypothesis for urchordate evolution. Zool Sci 26: 97-111.
-
(2009)
Zool Sci
, vol.26
, pp. 97-111
-
-
Satoh, N.1
-
25
-
-
0037626990
-
Large scale EST analyses in Ciona intestinalis Its application as Northern blot analyses
-
Satou Y, Kawashima T, Kohara Y, Satoh N. 2003. Large scale EST analyses in Ciona intestinalis Its application as Northern blot analyses. Dev Genes Evol 213: 314-318.
-
(2003)
Dev Genes Evol
, vol.213
, pp. 314-318
-
-
Satou, Y.1
Kawashima, T.2
Kohara, Y.3
Satoh, N.4
-
26
-
-
25444448272
-
An integrated database of the ascidian. Ciona intestinalis Towards functional genomics
-
Satou Y, Kawashima T, Shoguchi E, Nakayama A, Satoh N. 2005. An integrated database of the ascidian. Ciona intestinalis Towards functional genomics. Zoolog Sci 22: 837-843.
-
(2005)
Zoolog Sci
, vol.22
, pp. 837-843
-
-
Satou, Y.1
Kawashima, T.2
Shoguchi, E.3
Nakayama, A.4
Satoh, N.5
-
27
-
-
55349149407
-
Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis New insight into intron and operon populations
-
Satou Y, Mineta K, Ogasawara M, Sasakura Y, Shoguchi E, Ueno K, Yamada L, Matsumoto J, Wasserscheid J, Dewar K, Wiley GB, Macmil SL, Roe BA, Zeller RW, Hastings KE, Lemaire P, Lindquist E, Endo T, Hotta K, Inaba K. 2008. Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis New insight into intron and operon populations. Genome Biol 9: R152.
-
(2008)
Genome Biol
, vol.9
-
-
Satou, Y.1
Mineta, K.2
Ogasawara, M.3
Sasakura, Y.4
Shoguchi, E.5
Ueno, K.6
Yamada, L.7
Matsumoto, J.8
Wasserscheid, J.9
Dewar, K.10
Wiley, G.B.11
Macmil, S.L.12
Roe, B.A.13
Zeller, R.W.14
Hastings, K.E.15
Lemaire, P.16
Lindquist, E.17
Endo, T.18
Hotta, K.19
Inaba, K.20
more..
-
28
-
-
0037012570
-
Ciona intestinalis cDNA projects: Expressed sequence tag analyses and gene expression profiles during embryogenesis
-
Satou Y, Takatori N, Fujiwara S, Nishikata T, Saiga H, Kusakabe T, Shin-i T, Kohara Y, Satoh N. 2002. Ciona intestinalis cDNA projects: Expressed sequence tag analyses and gene expression profiles during embryogenesis. Gene 287: 83-96.
-
(2002)
Gene
, vol.287
, pp. 83-96
-
-
Satou, Y.1
Takatori, N.2
Fujiwara, S.3
Nishikata, T.4
Saiga, H.5
Kusakabe, T.6
Shin-i, T.7
Kohara, Y.8
Satoh, N.9
-
29
-
-
36849074774
-
Dynamics and interplay of nuclear architecture, genome organization, and gene expression
-
Schneider R, Grosschedl R. 2007. Dynamics and interplay of nuclear architecture, genome organization, and gene expression. Genes Dev 21: 3027-3043.
-
(2007)
Genes Dev
, vol.21
, pp. 3027-3043
-
-
Schneider, R.1
Grosschedl, R.2
-
30
-
-
33748195447
-
Evolutionary origin and maintenance of coexpressed gene clusters in mammals
-
Sémon M, Duret L. 2006. Evolutionary origin and maintenance of coexpressed gene clusters in mammals. Mol Biol Evol 23: 1715-1723.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1715-1723
-
-
Sémon, M.1
Duret, L.2
-
31
-
-
28844441165
-
Unraveling genomic regulatory networks in the simple chordate, Ciona intestinalis
-
Shi W, Levine M, Davidson B. 2005. Unraveling genomic regulatory networks in the simple chordate, Ciona intestinalis. Genome Res 15: 1668-1674.
-
(2005)
Genome Res
, vol.15
, pp. 1668-1674
-
-
Shi, W.1
Levine, M.2
Davidson, B.3
-
32
-
-
80051941613
-
No chromosomal clustering of housekeeping genes in the marine chordate Ciona intestinalis
-
in press.
-
Shoguchi E, Fujie M, Hamada M. No chromosomal clustering of housekeeping genes in the marine chordate Ciona intestinalis. Mar Genomics, in press.
-
Mar Genomics
-
-
Shoguchi, E.1
Fujie, M.2
Hamada, M.3
-
33
-
-
41149149050
-
Genome-wide network of regulatory genes for construction of a chordate embryo
-
Shoguchi E, Hamaguchi M, Satoh N. 2008. Genome-wide network of regulatory genes for construction of a chordate embryo. Dev Biol 316: 498-509.
-
(2008)
Dev Biol
, vol.316
, pp. 498-509
-
-
Shoguchi, E.1
Hamaguchi, M.2
Satoh, N.3
-
34
-
-
32044437567
-
Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis
-
Shoguchi E, Kawashima T, Satou Y, Hamaguchi M, Sin-i T, Kohara Y, Putnam N, Rokhsar DSSatoh N. 2006. Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis. Genome Res 16: 297-303.
-
(2006)
Genome Res
, vol.16
, pp. 297-303
-
-
Shoguchi, E.1
Kawashima, T.2
Satou, Y.3
Hamaguchi, M.4
Sin-i, T.5
Kohara, Y.6
Putnam, N.7
Rokhsar, D.S.8
Satoh, N.9
-
35
-
-
34248195006
-
CpG methylation is targeted to transcription units in an invertebrate genome
-
Suzuki MM, Kerr AR, De Sousa D, Bird A. 2007. CpG methylation is targeted to transcription units in an invertebrate genome. Genome Res 17: 625-631.
-
(2007)
Genome Res
, vol.17
, pp. 625-631
-
-
Suzuki, M.M.1
Kerr, A.R.2
De Sousa, D.3
Bird, A.4
-
36
-
-
76849102155
-
Regulation of notochord-specific expression of Ci-Bra downstream genes in Ciona intestinalis embryos
-
Takahashi H, Hotta K, Takagi C, Ueno N, Satoh N, Shoguchi E. 2010. Regulation of notochord-specific expression of Ci-Bra downstream genes in Ciona intestinalis embryos. Zoolog Sci 27: 110-118.
-
(2010)
Zoolog Sci
, vol.27
, pp. 110-118
-
-
Takahashi, H.1
Hotta, K.2
Takagi, C.3
Ueno, N.4
Satoh, N.5
Shoguchi, E.6
-
37
-
-
78649268796
-
The ANISEED database: Digital representation, formalization, and elucidation of a chordate developmental program
-
Tassy O, et al. 2010. The ANISEED database: Digital representation, formalization, and elucidation of a chordate developmental program. Genome Res 20: 1459-1468.
-
(2010)
Genome Res
, vol.20
, pp. 1459-1468
-
-
Tassy, O.1
-
38
-
-
73249116559
-
Comparison of diverse developmental transcriptomes reveals that coexpression of gene neighbors is not evolutionarily conserved
-
Yanai I, Hunter CP. 2009. Comparison of diverse developmental transcriptomes reveals that coexpression of gene neighbors is not evolutionarily conserved. Genome Res 19: 2214-2220.
-
(2009)
Genome Res
, vol.19
, pp. 2214-2220
-
-
Yanai, I.1
Hunter, C.P.2
|