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Volumn 27, Issue 16, 2011, Pages 2298-2299

MetaABC - An integrated metagenomics platform for data adjustment, binning and clustering

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLUSTER ANALYSIS; COMPUTER PROGRAM; METAGENOMICS; METHODOLOGY; SYSTEM ANALYSIS;

EID: 79961203060     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr376     Document Type: Article
Times cited : (7)

References (12)
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    • Angly, F.E.1
  • 2
    • 77954834592 scopus 로고    scopus 로고
    • Average genome size: a potential source of bias in comparative metagenomics
    • Beszteri,B. et al. (2010)Average genome size: a potential source of bias in comparative metagenomics. ISME J., 4, 1075-1077.
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    • Beszteri, B.1
  • 3
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    • Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models
    • Brady,A. and Salzberg,S.L. (2009) Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models. Nat. Methods, 6, 673-676.
    • (2009) Nat. Methods , vol.6 , pp. 673-676
    • Brady, A.1    Salzberg, S.L.2
  • 4
    • 77957895590 scopus 로고    scopus 로고
    • DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences
    • Ghosh,T.S. et al. (2010) DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences. BMC Bioinformatics, 11 (Suppl. 7), S14.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 7
    • Ghosh, T.S.1
  • 5
    • 70350294348 scopus 로고    scopus 로고
    • Systematic artifacts in metagenomes from complex microbial communities
    • Gomez-Alvarez,V. et al. (2009) Systematic artifacts in metagenomes from complex microbial communities. ISME J., 3, 1314-1317.
    • (2009) ISME J , vol.3 , pp. 1314-1317
    • Gomez-Alvarez, V.1
  • 7
    • 33847702910 scopus 로고    scopus 로고
    • MEGAN analysis of metagenomic data
    • Huson,D.H. et al. (2007) MEGAN analysis of metagenomic data. Genome Res., 17, 377-386.
    • (2007) Genome Res , vol.17 , pp. 377-386
    • Huson, D.H.1
  • 8
    • 33845957530 scopus 로고    scopus 로고
    • Accurate phylogenetic classification of variable-length DNA fragments
    • McHardy,A.C. et al. (2007) Accurate phylogenetic classification of variable-length DNA fragments. Nat. Methods, 4, 63-72.
    • (2007) Nat. Methods , vol.4 , pp. 63-72
    • McHardy, A.C.1
  • 9
    • 67649887316 scopus 로고    scopus 로고
    • SOrt-ITEMS: sequence orthology based approach for improved taxonomic estimation of metagenomic sequences
    • Monzoorul Haque,M. et al. (2009) SOrt-ITEMS: sequence orthology based approach for improved taxonomic estimation of metagenomic sequences. Bioinformatics, 25, 1722-1730.
    • (2009) Bioinformatics , vol.25 , pp. 1722-1730
    • Monzoorul Haque, M.1
  • 10
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    • Artificial and natural duplicates in pyrosequencing reads of metagenomic data
    • Niu,B. et al. (2010) Artificial and natural duplicates in pyrosequencing reads of metagenomic data. BMC Bioinformatics, 11, 187.
    • (2010) BMC Bioinformatics , vol.11 , pp. 187
    • Niu, B.1
  • 11
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    • Metagenomic analyses: past and future trends
    • Simon,C. and Daniel,R. (2011) Metagenomic analyses: past and future trends. Appl. Environ. Microbiol., 77, 1153-1161.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 1153-1161
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  • 12
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    • Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency
    • Weng,F.C. et al. (2010) Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency. BMC Bioinformatics, 11, 565.
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.