메뉴 건너뛰기




Volumn 135, Issue 4, 2011, Pages

Lagrangian formulation with dissipation of Born-Oppenheimer molecular dynamics using the density-functional tight-binding method

Author keywords

[No Author keywords available]

Indexed keywords

ACID MOLECULES; BORN-OPPENHEIMER MOLECULAR DYNAMICS; CONVERGENCE RATES; DENSITY FUNCTIONAL TIGHT BINDING METHOD; DISSIPATIVE FORCES; DYNAMICS STABILITY; ELECTRONIC VARIABLES; ENERGY DRIFT; FOCK MATRIX; GASPHASE; IMPROVED CONVERGENCE; LAGRANGIAN FORMALISM; LAGRANGIAN FORMULATIONS; LINEAR-RESPONSE THEORY; NUMBER OF ITERATIONS; PICOSECONDS; PROPAGATION ERROR; SCF CONVERGENCE; SELF-CONSISTENT CHARGES; SELF-CONSISTENT SOLUTION; SIMULATION TIME; STANDARD METHOD; TIME REQUIREMENTS; WATER MOLECULE; ZERO CHARGE;

EID: 79961074707     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3605303     Document Type: Article
Times cited : (76)

References (90)
  • 2
    • 34547507515 scopus 로고    scopus 로고
    • 10.1007/978-3-540-38085-6
    • H. M. Senn and W. Thiel, Top. Curr. Chem. 268, 173 (2007). 10.1007/978-3-540-38085-6
    • (2007) Top. Curr. Chem. , vol.268 , pp. 173
    • Senn, H.M.1    Thiel, W.2
  • 3
    • 84962367344 scopus 로고
    • in, edited by K. B. Lipkowitz and D. B. Boyd (VCH Publishers, New York), Vol. 7
    • J. Gao, in Reviews in Computational Chemistry, edited by, K. B. Lipkowitz, and, D. B. Boyd, (VCH Publishers, New York, 1995), Vol. 7, pp. 119.
    • (1995) Reviews in Computational Chemistry , pp. 119
    • Gao, J.1
  • 5
  • 7
    • 4243606192 scopus 로고
    • 10.1103/PhysRevLett.55.2471
    • R. Car and M. Parrinello, Phys. Rev. Lett. 55, 2471 (1985). 10.1103/PhysRevLett.55.2471
    • (1985) Phys. Rev. Lett. , vol.55 , pp. 2471
    • Car, R.1    Parrinello, M.2
  • 8
    • 31544469822 scopus 로고    scopus 로고
    • On the theory underlying the Car-Parrinello method and the role of the fictitious mass parameter
    • DOI 10.1063/1.2162893, 044111
    • P. Tangney, J. Chem. Phys. 124, 044111 (2006); 10.1063/1.2162893 (Pubitemid 43166308)
    • (2006) Journal of Chemical Physics , vol.124 , Issue.4 , pp. 1-14
    • Tangney, P.1
  • 9
    • 0036143736 scopus 로고    scopus 로고
    • How well do Car-Parrinello simulations reproduce the Born-Oppenheimer surface? Theory and examples
    • DOI 10.1063/1.1423331
    • P. Tangney and S. Scandolo, J. Chem. Phys. 116, 14 (2002); 10.1063/1.1423331 (Pubitemid 34061799)
    • (2002) Journal of Chemical Physics , vol.116 , Issue.1 , pp. 14-24
    • Tangney, P.1    Scandolo, S.2
  • 12
    • 11144248876 scopus 로고    scopus 로고
    • Curvy-steps approach to constraint-free extended-Lagrangian ab initio molecular dynamics, using atom-centered basis functions: Convergence toward Born-Oppenheimer trajectories
    • DOI 10.1063/1.1814934, 5
    • J. M. Herbert and M. Head-Gordon, J. Chem. Phys. 121, 11542 (2004); 10.1063/1.1814934 (Pubitemid 40048642)
    • (2004) Journal of Chemical Physics , vol.121 , Issue.23 , pp. 11542-11556
    • Herbert, J.M.1    Head-Gordon, M.2
  • 18
    • 0017100947 scopus 로고
    • 10.1016/0022-2836(76)90311-9
    • A. Warshel and M. Levitt, J. Mol. Biol. 103, 227 (1976); 10.1016/0022-2836(76)90311-9
    • (1976) J. Mol. Biol. , vol.103 , pp. 227
    • Warshel, A.1    Levitt, M.2
  • 22
    • 0042113153 scopus 로고
    • 10.1103/PhysRev.140.A1133
    • W. Kohn and L. J. Sham, Phys. Rev. 140, A1133 (1965); 10.1103/PhysRev.140.A1133
    • (1965) Phys. Rev. , vol.140 , pp. 1133
    • Kohn, W.1    Sham, L.J.2
  • 23
    • 0000189651 scopus 로고
    • 10.1063/1.464913
    • A. D. Becke, J. Chem. Phys. 98, 5648 (1993); 10.1063/1.464913
    • (1993) J. Chem. Phys. , vol.98 , pp. 5648
    • Becke, A.D.1
  • 24
  • 26
    • 0027223591 scopus 로고
    • 10.1016/S0040-4020(01)81868-8
    • M. J. S. Dewar, C. Jie, and J. Yu, Tetrahedron 49, 5003 (1993); 10.1016/S0040-4020(01)81868-8
    • (1993) Tetrahedron , vol.49 , pp. 5003
    • Dewar, M.J.S.1    Jie, C.2    Yu, J.3
  • 30
    • 84988129057 scopus 로고
    • 10.1002/jcc.540100208
    • J. J. P. Stewart, J. Comput. Chem. 10, 209 (1989); 10.1002/jcc.540100208
    • (1989) J. Comput. Chem. , vol.10 , pp. 209
    • Stewart, J.J.P.1
  • 32
    • 35448937584 scopus 로고    scopus 로고
    • Optimization of parameters for semiempirical methods V: Modification of NDDO approximations and application to 70 elements
    • DOI 10.1007/s00894-007-0233-4
    • J. J. P. Stewart, J. Mol. Model 13, 1173 (2007). 10.1007/s00894-007-0233- 4 (Pubitemid 47629446)
    • (2007) Journal of Molecular Modeling , vol.13 , Issue.12 , pp. 1173-1213
    • Stewart, J.J.P.1
  • 35
    • 0033115287 scopus 로고    scopus 로고
    • 10.1016/S0010-4655(98)00195-7
    • D. Alfe, Comput. Phys. Commun. 118, 31 (1999); 10.1016/S0010-4655(98) 00195-7
    • (1999) Comput. Phys. Commun. , vol.118 , pp. 31
    • Alfe, D.1
  • 36
    • 79051469194 scopus 로고    scopus 로고
    • 10.1209/0295-5075/88/20001
    • J. Y. Dai and J. M. Yuan, Epl 88, 20001 (2009). 10.1209/0295-5075/88/ 20001
    • (2009) Epl , vol.88 , pp. 20001
    • Dai, J.Y.1    Yuan, J.M.2
  • 37
    • 40549084063 scopus 로고    scopus 로고
    • Molecular orbital propagation to accelerate self-consistent-field convergence in an ab initio molecular dynamics simulation
    • DOI 10.1063/1.2839857
    • T. Atsumi and H. Nakai, J. Chem. Phys. 128, 132 (2008). 10.1063/1.2839857 (Pubitemid 351357780)
    • (2008) Journal of Chemical Physics , vol.128 , Issue.9 , pp. 094101
    • Atsumi, T.1    Nakai, H.2
  • 38
    • 77950238670 scopus 로고    scopus 로고
    • 10.1016/j.cplett.2010.03.012
    • T. Atsumi and H. Nakai, Chem. Phys. Lett. 490, 102 (2010). 10.1016/j.cplett.2010.03.012
    • (2010) Chem. Phys. Lett. , vol.490 , pp. 102
    • Atsumi, T.1    Nakai, H.2
  • 39
    • 1442336379 scopus 로고    scopus 로고
    • 10.1016/j.cplett.2004.01.069
    • P. Pulay and G. Fogarasi, Chem. Phys. Lett. 386, 272 (2004). 10.1016/j.cplett.2004.01.069
    • (2004) Chem. Phys. Lett. , vol.386 , pp. 272
    • Pulay, P.1    Fogarasi, G.2
  • 40
    • 26444575958 scopus 로고    scopus 로고
    • Accelerated, energy-conserving Born-Oppenheimer molecular dynamics via Fock matrix extrapolation
    • DOI 10.1039/b509494a
    • J. M. Herbert and M. Head-Gordon, Phys. Chem. Chem. Phys. 7, 3269 (2005). 10.1039/b509494a (Pubitemid 41417682)
    • (2005) Physical Chemistry Chemical Physics , vol.7 , Issue.18 , pp. 3269-3275
    • Herbert, J.M.1    Head-Gordon, M.2
  • 42
    • 33846891132 scopus 로고    scopus 로고
    • Efficient and accurate car-parrinello-like approach to born-oppenheimer molecular dynamics
    • DOI 10.1103/PhysRevLett.98.066401
    • T. D. Khne, M. Krack, F. R. Mohamed, and M. Parrinello, Phys. Rev. Lett. 98, 066401 (2007). 10.1103/PhysRevLett.98.066401 (Pubitemid 46220444)
    • (2007) Physical Review Letters , vol.98 , Issue.6 , pp. 066401
    • Kuhne, T.D.1    Krack, M.2    Mohamed, F.R.3    Parrinello, M.4
  • 43
    • 84986524957 scopus 로고
    • 10.1016/0009-2614(80)80396-4
    • P. Pulay, Chem. Phys. Lett. 73, 393 (1980); 10.1016/0009-2614(80)80396-4
    • (1980) Chem. Phys. Lett. , vol.73 , pp. 393
    • Pulay, P.1
  • 44
    • 44349162071 scopus 로고
    • 10.1002/jcc.540030413
    • P. Pulay, J. Comput. Chem. 3, 556 (1982). 10.1002/jcc.540030413
    • (1982) J. Comput. Chem. , vol.3 , pp. 556
    • Pulay, P.1
  • 45
    • 33748775457 scopus 로고    scopus 로고
    • Time-reversible born-oppenheimer molecular dynamics
    • DOI 10.1103/PhysRevLett.97.123001
    • A. M. N. Niklasson, C. J. Tymczak, and M. Challacombe, Phys. Rev. Lett. 97, 123001 (2006). 10.1103/PhysRevLett.97.123001 (Pubitemid 44414335)
    • (2006) Physical Review Letters , vol.97 , Issue.12 , pp. 123001
    • Niklasson, A.M.N.1    Tymczak, C.J.2    Challacombe, M.3
  • 47
    • 41549099103 scopus 로고    scopus 로고
    • Extended Born-Oppenheimer molecular dynamics
    • DOI 10.1103/PhysRevLett.100.123004
    • A. M. N. Niklasson, Phys. Rev. Lett. 100, 123004 (2008). 10.1103/PhysRevLett.100.123004 (Pubitemid 351465139)
    • (2008) Physical Review Letters , vol.100 , Issue.12 , pp. 123004
    • Niklasson, A.M.N.1
  • 51
    • 0942288237 scopus 로고    scopus 로고
    • 10.1002/jcc.10385
    • J. Kolafa, J. Comput. Chem. 25, 7 (2004). 10.1002/jcc.10385
    • (2004) J. Comput. Chem. , vol.25 , pp. 7
    • Kolafa, J.1
  • 55
    • 36849130718 scopus 로고
    • 10.1063/1.1740589
    • R. S. Mulliken, J. Chem. Phys. 23, 1841 (1955). 10.1063/1.1740589
    • (1955) J. Chem. Phys. , vol.23 , pp. 1841
    • Mulliken, R.S.1
  • 57
    • 23144449695 scopus 로고    scopus 로고
    • 86 fullerene isomers
    • DOI 10.1016/j.cplett.2005.06.105, PII S0009261405009334
    • G. Zheng, S. Irle, and K. Morokuma, Chem. Phys. Lett. 412, 210 (2005). 10.1016/j.cplett.2005.06.105 (Pubitemid 41085112)
    • (2005) Chemical Physics Letters , vol.412 , Issue.1-3 , pp. 210-216
    • Zheng, G.1    Irle, S.2    Morokuma, K.3
  • 58
    • 0000738606 scopus 로고
    • 10.1103/PhysRevB.38.12807
    • D. D. Johnson, Phys. Rev. B 38, 12807 (1988). 10.1103/PhysRevB.38.12807
    • (1988) Phys. Rev. B , vol.38 , pp. 12807
    • Johnson, D.D.1
  • 60
    • 0030584605 scopus 로고    scopus 로고
    • A comparative study on methods for convergence acceleration of iterative vector sequences
    • DOI 10.1006/jcph.1996.0059
    • V. Eyert, J. Comput. Phys. 124, 271 (1996). 10.1006/jcph.1996.0059 (Pubitemid 126170316)
    • (1996) Journal of Computational Physics , vol.124 , Issue.2 , pp. 271-285
    • Eyert, V.1
  • 67
    • 34547492825 scopus 로고    scopus 로고
    • Simulating water with the self-consistent-charge density functional tight binding method: From molecular clusters to the liquid state
    • DOI 10.1021/jp070308d
    • H. Hu, Z. Y. Lu, M. Elstner, J. Hermans, and W. T. Yang, J. Phys. Chem. A 111, 5685 (2007). 10.1021/jp070308d (Pubitemid 47166772)
    • (2007) Journal of Physical Chemistry A , vol.111 , Issue.26 , pp. 5685-5691
    • Hu, H.1    Lu, Z.2    Elstner, M.3    Hermans, J.4    Yang, W.5
  • 72
    • 33748969865 scopus 로고    scopus 로고
    • 10.1002/cphc.200600128
    • D. Marx, ChemPhysChem 7, 1848 (2006); 10.1002/cphc.200600128
    • (2006) ChemPhysChem , vol.7 , pp. 1848
    • Marx, D.1
  • 76
  • 81
    • 34247627604 scopus 로고    scopus 로고
    • Dynamical properties of liquid water from ab initio molecular dynamics performed in the complete basis set limit
    • DOI 10.1063/1.2718521
    • H.-S. Lee and M. E. Tuckerman, J. Chem. Phys. 126, 164501 (2007). 10.1063/1.2718521 (Pubitemid 46685455)
    • (2007) Journal of Chemical Physics , vol.126 , Issue.16 , pp. 164501
    • Lee, H.-S.1    Tuckerman, M.E.2
  • 83
    • 0034662899 scopus 로고    scopus 로고
    • 10.1016/S0301-0104(00)00179-8
    • A. K. Soper, Chem. Phys. 258, 121 (2000). 10.1016/S0301-0104(00)00179-8
    • (2000) Chem. Phys. , vol.258 , pp. 121
    • Soper, A.K.1
  • 84
    • 33750145288 scopus 로고    scopus 로고
    • Structure of liquid water at ambient temperature from ab initio molecular dynamics performed in the complete basis set limit
    • DOI 10.1063/1.2354158
    • H.-S. Lee and M. E. Tuckerman, J. Chem. Phys. 125, 154507 (2006). 10.1063/1.2354158 (Pubitemid 44601814)
    • (2006) Journal of Chemical Physics , vol.125 , Issue.15 , pp. 154507
    • Lee, H.-S.1    Tuckerman, M.E.2
  • 85
    • 33748283200 scopus 로고    scopus 로고
    • The SCC-DFTB method and its application to biological systems
    • DOI 10.1007/s00214-005-0066-0
    • M. Elstner, Theor. Chem. Acc. 116, 316 (2006). 10.1007/s00214-005-0066-0 (Pubitemid 44318433)
    • (2006) Theoretical Chemistry Accounts , vol.116 , Issue.1-3 , pp. 316-325
    • Elstner, M.1
  • 88
    • 38749111812 scopus 로고    scopus 로고
    • An improved multistate empirical valence bond model for aqueous proton solvation and transport
    • DOI 10.1021/jp076658h
    • Y. Wu, H. Chen, F. Wang, F. Paesani, and G. A. Voth, J. Phys. Chem. B 112, 467 (2008). 10.1021/jp076658h (Pubitemid 351184621)
    • (2008) Journal of Physical Chemistry B , vol.112 , Issue.2 , pp. 467-482
    • Wu, Y.1    Chen, H.2    Wang, F.3    Paesani, F.4    Voth, G.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.