-
1
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
10.1093/nar/gkg595, 169194, 12824337
-
Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31:3406-3415. 10.1093/nar/gkg595, 169194, 12824337.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
2
-
-
0043123153
-
Vienna RNA secondary structure server
-
10.1093/nar/gkg599, 169005, 12824340
-
Hofacker IL. Vienna RNA secondary structure server. Nucleic Acids Res 2003, 31:3429-3431. 10.1093/nar/gkg599, 169005, 12824340.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
3
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
10.1006/jmbi.1999.2700, 10329189
-
Mathews DH, Sabina J, Zuker M, Turner D. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 1999, 288:911-940. 10.1006/jmbi.1999.2700, 10329189.
-
(1999)
J Mol Biol
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.4
-
4
-
-
33747815625
-
The rules of the evolutionary game for RNA: a statistical characterization of the sequence to structure mapping in RNA
-
PhD thesis, Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria
-
Hofacker IL. The rules of the evolutionary game for RNA: a statistical characterization of the sequence to structure mapping in RNA. 1994, PhD thesis, Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria.
-
(1994)
-
-
Hofacker, I.L.1
-
5
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker IL, Fontana W, Stadler PF, Bonhoeffer LS, Tacker M, Schuster P. Fast folding and comparison of RNA secondary structures. Monatsh Chem 1994, 125:167-188.
-
(1994)
Monatsh Chem
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
Fontana, W.2
Stadler, P.F.3
Bonhoeffer, L.S.4
Tacker, M.5
Schuster, P.6
-
6
-
-
0842268067
-
A new algorithm for RNA secondary structure design
-
10.1016/j.jmb.2003.12.041, 15095976
-
Andronescu M, Fejes AP, Hutter F, Hoos HH, Condon A. A new algorithm for RNA secondary structure design. J Mol Biol 2004, 336(3):607-624. 10.1016/j.jmb.2003.12.041, 15095976.
-
(2004)
J Mol Biol
, vol.336
, Issue.3
, pp. 607-624
-
-
Andronescu, M.1
Fejes, A.P.2
Hutter, F.3
Hoos, H.H.4
Condon, A.5
-
7
-
-
33747840719
-
INFO-RNA--a fast approach to inverse RNA folding
-
10.1093/bioinformatics/btl194, 16709587
-
Busch A, Backofen R. INFO-RNA--a fast approach to inverse RNA folding. Bioinformatics 2006, 22(15):1823-1831. 10.1093/bioinformatics/btl194, 16709587.
-
(2006)
Bioinformatics
, vol.22
, Issue.15
, pp. 1823-1831
-
-
Busch, A.1
Backofen, R.2
-
8
-
-
0034522921
-
RNA secondary structure: physical and computational aspects
-
Higgs PG. RNA secondary structure: physical and computational aspects. Quarterly Rev Biophys 2000, 33:199-253.
-
(2000)
Quarterly Rev Biophys
, vol.33
, pp. 199-253
-
-
Higgs, P.G.1
-
9
-
-
47849107379
-
Reconstruction of natural RNA sequences from RNA shape, thermodynamic stability, mutational robustness, and linguistic complexity by evolutionary computation
-
Dromi N, Avihoo A, Barash D. Reconstruction of natural RNA sequences from RNA shape, thermodynamic stability, mutational robustness, and linguistic complexity by evolutionary computation. J Biomol Struct Dyn 2008, 26(1):147-162.
-
(2008)
J Biomol Struct Dyn
, vol.26
, Issue.1
, pp. 147-162
-
-
Dromi, N.1
Avihoo, A.2
Barash, D.3
-
10
-
-
0344237374
-
Deleterious mutation prediction in the secondary structure of RNAs
-
10.1093/nar/gkg872, 275566, 14602917
-
Barash D. Deleterious mutation prediction in the secondary structure of RNAs. Nucleic Acids Res 2003, 31(22):6578-6584. 10.1093/nar/gkg872, 275566, 14602917.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.22
, pp. 6578-6584
-
-
Barash, D.1
-
11
-
-
50949133711
-
Efficient algorithms for probing the RNA mutation landscape
-
10.1371/journal.pcbi.1000124, 2475669, 18688270
-
Waldispühl J, Devadas S, Berger B, Clote P. Efficient algorithms for probing the RNA mutation landscape. PLOS Comput Biol 2008, 4(8):e1000124.. 10.1371/journal.pcbi.1000124, 2475669, 18688270.
-
(2008)
PLOS Comput Biol
, vol.4
, Issue.8
-
-
Waldispühl, J.1
Devadas, S.2
Berger, B.3
Clote, P.4
-
12
-
-
0004097542
-
Stochastic local search methods, models, applications
-
PhD thesis, department of computer science, Darmstadt University of Technology, Darmstadt, Germany
-
Hoos HH. Stochastic local search methods, models, applications. 1998, PhD thesis, department of computer science, Darmstadt University of Technology, Darmstadt, Germany.
-
(1998)
-
-
Hoos, H.H.1
-
13
-
-
0024061490
-
An algorithm for comparing multiple RNA secondary structures
-
Shapiro BA. An algorithm for comparing multiple RNA secondary structures. Comput Appl Biosci 1988, l4:387-393.
-
(1988)
Comput Appl Biosci
, vol.l4
, pp. 387-393
-
-
Shapiro, B.A.1
-
14
-
-
0024386096
-
Tree graphs of RNA secondary structures and their comparisons
-
Le SY, Nussinov R, Maizel JV. Tree graphs of RNA secondary structures and their comparisons. Comput Appl Biosci 1989, 22:461-473.
-
(1989)
Comput Appl Biosci
, vol.22
, pp. 461-473
-
-
Le, S.Y.1
Nussinov, R.2
Maizel, J.V.3
-
15
-
-
4744357297
-
Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design
-
10.1074/jbc.M404931200, 15292246
-
Krol J, Sobczak K, Wilczynska U, Drath M, Jasinska A, Kaczynska D, Krzyzosiak WJ. Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design. J Biol Chem 2004, 279:42230-42239. 10.1074/jbc.M404931200, 15292246.
-
(2004)
J Biol Chem
, vol.279
, pp. 42230-42239
-
-
Krol, J.1
Sobczak, K.2
Wilczynska, U.3
Drath, M.4
Jasinska, A.5
Kaczynska, D.6
Krzyzosiak, W.J.7
-
16
-
-
0347755643
-
The microRNA registry
-
10.1093/nar/gkh023, 308757, 14681370
-
Griffiths-Jones S. The microRNA registry. Nucleic Acids Res 2004, 32:D109-D111. 10.1093/nar/gkh023, 308757, 14681370.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Griffiths-Jones, S.1
-
17
-
-
0030064378
-
Linguistic complexity of protein sequences as compared to texts of human languages
-
10.1016/0303-2647(95)01568-X, 8833749
-
Popov O, Segal DM, Trifonov EN. Linguistic complexity of protein sequences as compared to texts of human languages. Biosystems 1996, 38:65-74. 10.1016/0303-2647(95)01568-X, 8833749.
-
(1996)
Biosystems
, vol.38
, pp. 65-74
-
-
Popov, O.1
Segal, D.M.2
Trifonov, E.N.3
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