메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences

Author keywords

[No Author keywords available]

Indexed keywords

INTERACTIVE JAVA APPLICATIONS; LINUX- OPERATING SYSTEM; MINIMUM FREE ENERGIES; RNA SECONDARY STRUCTURES; SECONDARY STRUCTURE PREDICTION; SECONDARY STRUCTURES; STEM-LOOP STRUCTURES; USER-FRIENDLY TOOL;

EID: 79961012212     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-319     Document Type: Article
Times cited : (34)

References (17)
  • 1
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • 10.1093/nar/gkg595, 169194, 12824337
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31:3406-3415. 10.1093/nar/gkg595, 169194, 12824337.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 2
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • 10.1093/nar/gkg599, 169005, 12824340
    • Hofacker IL. Vienna RNA secondary structure server. Nucleic Acids Res 2003, 31:3429-3431. 10.1093/nar/gkg599, 169005, 12824340.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1
  • 3
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • 10.1006/jmbi.1999.2700, 10329189
    • Mathews DH, Sabina J, Zuker M, Turner D. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 1999, 288:911-940. 10.1006/jmbi.1999.2700, 10329189.
    • (1999) J Mol Biol , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.4
  • 4
    • 33747815625 scopus 로고
    • The rules of the evolutionary game for RNA: a statistical characterization of the sequence to structure mapping in RNA
    • PhD thesis, Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria
    • Hofacker IL. The rules of the evolutionary game for RNA: a statistical characterization of the sequence to structure mapping in RNA. 1994, PhD thesis, Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria.
    • (1994)
    • Hofacker, I.L.1
  • 6
    • 0842268067 scopus 로고    scopus 로고
    • A new algorithm for RNA secondary structure design
    • 10.1016/j.jmb.2003.12.041, 15095976
    • Andronescu M, Fejes AP, Hutter F, Hoos HH, Condon A. A new algorithm for RNA secondary structure design. J Mol Biol 2004, 336(3):607-624. 10.1016/j.jmb.2003.12.041, 15095976.
    • (2004) J Mol Biol , vol.336 , Issue.3 , pp. 607-624
    • Andronescu, M.1    Fejes, A.P.2    Hutter, F.3    Hoos, H.H.4    Condon, A.5
  • 7
    • 33747840719 scopus 로고    scopus 로고
    • INFO-RNA--a fast approach to inverse RNA folding
    • 10.1093/bioinformatics/btl194, 16709587
    • Busch A, Backofen R. INFO-RNA--a fast approach to inverse RNA folding. Bioinformatics 2006, 22(15):1823-1831. 10.1093/bioinformatics/btl194, 16709587.
    • (2006) Bioinformatics , vol.22 , Issue.15 , pp. 1823-1831
    • Busch, A.1    Backofen, R.2
  • 8
    • 0034522921 scopus 로고    scopus 로고
    • RNA secondary structure: physical and computational aspects
    • Higgs PG. RNA secondary structure: physical and computational aspects. Quarterly Rev Biophys 2000, 33:199-253.
    • (2000) Quarterly Rev Biophys , vol.33 , pp. 199-253
    • Higgs, P.G.1
  • 9
    • 47849107379 scopus 로고    scopus 로고
    • Reconstruction of natural RNA sequences from RNA shape, thermodynamic stability, mutational robustness, and linguistic complexity by evolutionary computation
    • Dromi N, Avihoo A, Barash D. Reconstruction of natural RNA sequences from RNA shape, thermodynamic stability, mutational robustness, and linguistic complexity by evolutionary computation. J Biomol Struct Dyn 2008, 26(1):147-162.
    • (2008) J Biomol Struct Dyn , vol.26 , Issue.1 , pp. 147-162
    • Dromi, N.1    Avihoo, A.2    Barash, D.3
  • 10
    • 0344237374 scopus 로고    scopus 로고
    • Deleterious mutation prediction in the secondary structure of RNAs
    • 10.1093/nar/gkg872, 275566, 14602917
    • Barash D. Deleterious mutation prediction in the secondary structure of RNAs. Nucleic Acids Res 2003, 31(22):6578-6584. 10.1093/nar/gkg872, 275566, 14602917.
    • (2003) Nucleic Acids Res , vol.31 , Issue.22 , pp. 6578-6584
    • Barash, D.1
  • 11
    • 50949133711 scopus 로고    scopus 로고
    • Efficient algorithms for probing the RNA mutation landscape
    • 10.1371/journal.pcbi.1000124, 2475669, 18688270
    • Waldispühl J, Devadas S, Berger B, Clote P. Efficient algorithms for probing the RNA mutation landscape. PLOS Comput Biol 2008, 4(8):e1000124.. 10.1371/journal.pcbi.1000124, 2475669, 18688270.
    • (2008) PLOS Comput Biol , vol.4 , Issue.8
    • Waldispühl, J.1    Devadas, S.2    Berger, B.3    Clote, P.4
  • 12
    • 0004097542 scopus 로고    scopus 로고
    • Stochastic local search methods, models, applications
    • PhD thesis, department of computer science, Darmstadt University of Technology, Darmstadt, Germany
    • Hoos HH. Stochastic local search methods, models, applications. 1998, PhD thesis, department of computer science, Darmstadt University of Technology, Darmstadt, Germany.
    • (1998)
    • Hoos, H.H.1
  • 13
    • 0024061490 scopus 로고
    • An algorithm for comparing multiple RNA secondary structures
    • Shapiro BA. An algorithm for comparing multiple RNA secondary structures. Comput Appl Biosci 1988, l4:387-393.
    • (1988) Comput Appl Biosci , vol.l4 , pp. 387-393
    • Shapiro, B.A.1
  • 14
    • 0024386096 scopus 로고
    • Tree graphs of RNA secondary structures and their comparisons
    • Le SY, Nussinov R, Maizel JV. Tree graphs of RNA secondary structures and their comparisons. Comput Appl Biosci 1989, 22:461-473.
    • (1989) Comput Appl Biosci , vol.22 , pp. 461-473
    • Le, S.Y.1    Nussinov, R.2    Maizel, J.V.3
  • 15
    • 4744357297 scopus 로고    scopus 로고
    • Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design
    • 10.1074/jbc.M404931200, 15292246
    • Krol J, Sobczak K, Wilczynska U, Drath M, Jasinska A, Kaczynska D, Krzyzosiak WJ. Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design. J Biol Chem 2004, 279:42230-42239. 10.1074/jbc.M404931200, 15292246.
    • (2004) J Biol Chem , vol.279 , pp. 42230-42239
    • Krol, J.1    Sobczak, K.2    Wilczynska, U.3    Drath, M.4    Jasinska, A.5    Kaczynska, D.6    Krzyzosiak, W.J.7
  • 16
    • 0347755643 scopus 로고    scopus 로고
    • The microRNA registry
    • 10.1093/nar/gkh023, 308757, 14681370
    • Griffiths-Jones S. The microRNA registry. Nucleic Acids Res 2004, 32:D109-D111. 10.1093/nar/gkh023, 308757, 14681370.
    • (2004) Nucleic Acids Res , vol.32
    • Griffiths-Jones, S.1
  • 17
    • 0030064378 scopus 로고    scopus 로고
    • Linguistic complexity of protein sequences as compared to texts of human languages
    • 10.1016/0303-2647(95)01568-X, 8833749
    • Popov O, Segal DM, Trifonov EN. Linguistic complexity of protein sequences as compared to texts of human languages. Biosystems 1996, 38:65-74. 10.1016/0303-2647(95)01568-X, 8833749.
    • (1996) Biosystems , vol.38 , pp. 65-74
    • Popov, O.1    Segal, D.M.2    Trifonov, E.N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.