Linear molecular beacons for highly sensitive bioanalysis based on cyclic Exo III enzymatic amplification

Biosensors and Bioelectronics

Volumn 27, Issue 1, 2011, Pages 119-124

  Yang, Chaoyong James ^a   Cui, Liang ^a   Huang, Jiahao ^a   Yan, Ling ^a   Lin, Xiaoyan ^a   Wang, Chunming ^a   Zhang, Wei Yun ^a   Kang, Huaizhi ^a  

^a XIAMEN UNIVERSITY   (China)

Author keywords

Cocaine; DNA; Exo III; Linear molecular beacons; Signal amplification

Indexed keywords

ACID MOLECULES; BACKGROUND NOISE; BACKGROUND SIGNALS; BIOANALYSIS; BIOLOGICAL RESEARCH; CLINICAL DIAGNOSIS; COCAINE; DETECTION LIMITS; EXO III; EXONUCLEASE; FASTER REACTIONS; FORENSIC INVESTIGATION; GENERAL METHOD; HIGH SENSITIVITY; HIGHLY SENSITIVE; LINEAR MOLECULAR BEACONS; MOLECULAR BEACON; NON-SPECIFIC INTERACTIONS; NUCLEIC ACID DETECTION; OLIGONUCLEOTIDE PROBES; ORDERS OF MAGNITUDE; SELECTIVE DETECTION; SENSITIVE ANALYSIS; SIGNAL AMPLIFICATION; SMALL MOLECULES; ULTRASENSITIVE;

ASSAYS; BIOMOLECULES; DIAGNOSIS; FLUOROPHORES; NUCLEIC ACIDS; OLIGONUCLEOTIDES; REACTION RATES; SIGNAL DETECTION; SIGNALING;

PROBES;

COCAINE; EXODEOXYRIBONUCLEASE III; NUCLEIC ACID; NUCLEOTIDE DERIVATIVE;

3' UNTRANSLATED REGION; ARTICLE; BIOCHEMISTRY; ENZYME ANALYSIS; ENZYME ASSAY; ENZYME KINETICS; HYBRIDIZATION; LINEAR MOLECULAR BEACON; MOLECULAR BIOLOGY; MOLECULAR PROBE; NUCLEIC ACID ANALYSIS; OLIGONUCLEOTIDE PROBE; SENSITIVITY ANALYSIS;

COCAINE; EXODEOXYRIBONUCLEASES; NUCLEIC ACIDS; OLIGONUCLEOTIDE PROBES; SENSITIVITY AND SPECIFICITY;

EID: 79960928935     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2011.06.027     Document Type: Article

References (45)

1. Bekkaoui F., Poisson I., Crosby W., Cloney L., Duck P. BioTechniques 1996, 20(2):240-248.
2. Beyer S., Simmel F.C. Nucleic Acids Res. 2006, 34(5):1581-1587.
3. Cheng J.P., Zhang Y.Y., Li Q.G. Nucleic Acids Res. 2004, 32(7):e61.
4. Connolly A.R., Trau M. Angew. Chem. Int. Ed. Engl. 2010, 49(15):2720-2723.
5. Cui L., Ke G., Zhang W.Y., Yang C.J. Biosens. Bioelectron. 2011, 26(5):2796-2800.
6. Cui L.A., Ke G.L., Wang C.M., Yang C.J. Analyst 2010, 135(8):2069-2073.
7. Freeman R., Sharon E., Tel-Vered R., Willner I. J. Am. Chem. Soc. 2009, 131(14):5028-5029.
8. Goodrich T.T., Lee H.J., Corn R.M. J. Am. Chem. Soc. 2004, 126(13):4086-4087.
9. Goodrich T.T., Lee H.J., Corn R.M. Anal. Chem. 2004, 76(21):6173-6178.
10. Guo Q.P., Yang X.H., Wang K.M., Tan W.H., Li W., Tang H.X., Li H.M. Nucleic Acids Res. 2009, 37(3):e20.
11. He J.L., Wu Z.S., Zhou H., Wang H.Q., Jiang J.H., Shen G.L., Yu R.Q. Anal. Chem. 2010, 82(4):1358-1364.
12. Jung C., Chung J.W., Kim U.O., Kim M.H., Park H.G. Anal. Chem. 2010, 82(14):5937-5943.
13. Kiesling T., Cox K., Davidson E.A., Dretchen K., Grater G., Hibbard S., Lasken R.S., Leshin J., Skowronski E., Danielsen M. Nucleic Acids Res. 2007, 35(18).
14. Kim J.H., Chung B.H. Small 2010, 6(1):126-131.
15. Kim J.H., Estabrook R.A., Braun G., Lee B.R., Reich N.O. Chem. Commun. (Cambridge, UK) 2007, (42):4342-4344.
16. Kim Y., Yang C.J., Tan W. Nucleic Acids Res. 2007, 35(21):7279-7287.
17. Kolpashchikov D.M. Chem. Rev. (Washington, DC, USA) 2010, 110(8):4709-4723.
18. Lee H.J., Li Y., Wark A.W., Corn R.M. Anal. Chem. 2005, 77(16):5096-5100.
19. Lee H.J., Wark A.W., Corn R.M. Langmuir 2006, 22(12):5241-5250.
20. Li D., Wieckowska A., Willner I. Angew. Chem. Int. Ed. Engl. 2008, 47(21):3927-3931.
21. Li J.W.J., Chu Y.Z., Lee B.Y.H., Xie X.L.S. Nucleic Acids Res. 2008, 36(6):e36.
22. Li Q.G., Luan G.Y., Guo Q.P., Liang J.X. Nucleic Acids Res. 2002, 30(2):e5.
23. Liu J.W., Cao Z.H., Lu Y. Chem. Rev. (Washington, DC, USA) 2009, 109(5):1948-1998.
24. Marti A.A., Jockusch S., Stevens N., Ju J.Y., Turro N.J. Acc. Chem. Res. 2007, 40(6):402-409.
25. Ou L.J., Jin P.Y., Chu X., Jiang J.H., Yu R.Q. Anal. Chem. 2010, 82(14):6015-6024.
26. Ren B.Z., Zhou J.M., Komiyama M. Nucleic Acids Res. 2004, 32(4):e42.
27. Shlyahovsky B., Li D., Weizmann Y., Nowarski R., Kotler M., Willner I. J. Am. Chem. Soc. 2007, 129(13):3814-3815.
28. Stojanovic M.N., Landry D.W. J. Am. Chem. Soc. 2002, 124(33):9678-9679.
29. Subramanian K., Rutvisuttinunt W., Scott W., Myers R.S. Nucleic Acids Res. 2003, 31(6):1585-1596.
30. Tan E., Wong J., Nguyen D., Zhang Y., Erwin B., Van Ness L.K., Baker S.M., Galas D.J., Niemz A. Anal. Chem. 2005, 77(24):7984-7992.
31. Tsourkas A., Behlke M.A., Rose S.D., Bao G. Nucleic Acids Res. 2003, 31(4):1319-1330.
32. Van Ness J., Van Ness L.K., Galas D.J. Proc. Natl. Acad. Sci. U.S.A. 2003, 100(8):4504-4509.
33. Wang J.K., Li T.X., Guo X.Y., Lu Z.H. Nucleic Acids Res. 2005, 33(2):e23.
34. Wang K.M., Tang Z.W., Yang C.Y.J., Kim Y.M., Fang X.H., Li W., Wu Y.R., Medley C.D., Cao Z.H., Li J., Colon P., Lin H., Tan W.H. Angew. Chem. Int. Ed. Engl. 2009, 48(5):856-870.
35. Wang L., Yang C.J., Medley C.D., Benner S.A., Tan W. J. Am. Chem. Soc. 2005, 127(45):15664-15665.
36. Weizmann Y., Beissenhirtz M.K., Cheglakov Z., Nowarski R., Kotler M., Willner I. Angew. Chem. Int. Ed. Engl. 2006, 45(44):7384-7388.
37. Weizmann Y., Cheglakov Z., Pavlov V., Willner I. Angew. Chem. Int. Ed. Engl. 2006, 45(14):2238-2242.
38. Weizmann Y., Cheglakov Z., Willner I. J. Am. Chem. Soc. 2008, 130(51):17224-17225.
39. Xu X.Y., Zhao Z., Qin L.D., Wei W., Levine J.E., Mirkin C.A. Anal. Chem. 2008, 80(14):5616-5621.
40. Yang C.J., Lin H., Tan W. J. Am. Chem. Soc. 2005, 127(37):12772-12773.
41. Yang C.J., Pinto M., Schanze K., Tan W. Angew. Chem. Int. Ed. Engl. 2005, 44(17):2572-2576.
42. Zhang J., Wang L.H., Pan D., Song S.P., Boey F.Y.C., Zhang H., Fan C.H. Small 2008, 4(8):1196-1200.
43. Zhou Y.T., Huang Q., Gao J.M., Lu J.X., Shen X.Z., Fan C.H. Nucleic Acids Res. 2010, 38(15):e156.
44. Zhu Z., Wu C., Liu H., Zou Y., Zhang X., Kang H., Yang C.J., Tan W. Angew. Chem. Int. Ed. Engl. 2010, 49(6):1052-1056.
45. Zuo X.L., Xia F., Xiao Y., Plaxco K.W. J. Am. Chem. Soc. 2010, 132(6):1816-1818.