-
1
-
-
8844252296
-
Distribution of information in biomedical abstracts and full-text publications
-
Schuemie, M. J., Weeber, M., Schijvenaars, B. J., et al. (2004) Distribution of information in biomedical abstracts and full-text publications, Bioinformatics 20, 2597–2604.
-
(2004)
Bioinformatics
, vol.20
, pp. 2597-2604
-
-
Schuemie, M.J.1
Weeber, M.2
Schijvenaars, B.J.3
-
2
-
-
47349112836
-
-
in Biocreative 2 workshop, Madrid
-
Schuemie, M. J., Jelier, R., and Kors, J. A. (2007) Peregrine: lightweight gene name normalization by dictionary lookup, in Biocreative 2 workshop, pp. 131–140, Madrid.
-
(2007)
Peregrine: Lightweight Gene Name Normalization by Dictionary Lookup
, pp. 131-140
-
-
Schuemie, M.J.1
Jelier, R.2
Kors, J.A.3
-
3
-
-
0345863927
-
The Unified Medical Language System (UMLS): Integrating biomedical terminology
-
Bodenreider, O. (2004) The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res 32, D267–270.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D267-D270
-
-
Bodenreider, O.1
-
4
-
-
3042786293
-
A gene network for navigating the literature
-
Hoffmann, R., and Valencia, A. (2004) A gene network for navigating the literature. Nat Genet 36, 664.
-
(2004)
Nat Genet
, vol.36
, pp. 664
-
-
Hoffmann, R.1
Valencia, A.2
-
5
-
-
0035042776
-
A literature network of human genes for high-throughput analysis of gene expression
-
Jenssen, T. K., Laegreid, A., Komorowski, J., and Hovig, E. (2001) A literature network of human genes for high-throughput analysis of gene expression. Nat Genet 28, 21–28.
-
(2001)
Nat Genet
, vol.28
, pp. 21-28
-
-
Jenssen, T.K.1
Laegreid, A.2
Komorowski, J.3
Hovig, E.4
-
6
-
-
58149193234
-
STRING 8 – a global view on proteins and their functional interactions in 630 organisms
-
Jensen, L. J., Kuhn, M., Stark, M., et al. (2009) STRING 8 – a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res 37, D412–416.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D412-D416
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
-
7
-
-
65349085291
-
Global networks of functional coupling in eukaryotes from comprehensive data integration
-
Alexeyenko, A., and Sonnhammer, E. L. (2009) Global networks of functional coupling in eukaryotes from comprehensive data integration. Genome Res 19, 1107–1116.
-
(2009)
Genome Res
, vol.19
, pp. 1107-1116
-
-
Alexeyenko, A.1
Sonnhammer, E.L.2
-
8
-
-
33646568805
-
Gene prioritization through genomic data fusion
-
Aerts, S., Lambrechts, D., Maity, S., et al. (2006) Gene prioritization through genomic data fusion. Nat Biotechnol 24, 537–544.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 537-544
-
-
Aerts, S.1
Lambrechts, D.2
Maity, S.3
-
9
-
-
41149175599
-
Literature-based concept profiles for gene annotation: The issue of weighting
-
Jelier, R., Schuemie, M. J., Roes, P. J., van Mulligen, E. M., and Kors, J. A. (2008) Literature-based concept profiles for gene annotation: the issue of weighting. Int J Med Inform 77, 354–362.
-
(2008)
Int J Med Inform
, vol.77
, pp. 354-362
-
-
Jelier, R.1
Schuemie, M.J.2
Roes, P.J.3
van Mulligen, E.M.4
Kors, J.A.5
-
10
-
-
0022786956
-
Fish oil, Raynaud’s syndrome, and undiscovered public knowledge
-
Swanson, D. R. (1986) Fish oil, Raynaud’s syndrome, and undiscovered public knowledge. Perspect Biol Med 30, 7–18.
-
(1986)
Perspect Biol Med
, vol.30
, pp. 7-18
-
-
Swanson, D.R.1
-
11
-
-
70849127582
-
Novel Protein–Protein Interactions Inferred from Literature Context
-
van Haagen, H. H. H. B. M., t Hoen, P. A. C., Botelho Bovo, A., et al. (2009) Novel Protein–Protein Interactions Inferred from Literature Context. PLoS ONE 4, e7894.
-
(2009)
Plos ONE
, vol.e7894
, pp. 4
-
-
van Haagen, H.H.H.B.M.1
T Hoen, P.A.C.2
Botelho Bovo, A.3
-
12
-
-
47349105353
-
Anni 2.0: A multipurpose text-mining tool for the life sciences
-
Jelier, R., Schuemie, M. J., Veldhoven, A., et al. (2008) Anni 2.0: a multipurpose text-mining tool for the life sciences. Genome Biol 9, R96.
-
(2008)
Genome Biol
, vol.9
, pp. R96
-
-
Jelier, R.1
Schuemie, M.J.2
Veldhoven, A.3
-
14
-
-
58149191270
-
The Universal Protein Resource (UniProt) 2009
-
UniProt (2009) The Universal Protein Resource (UniProt) 2009. Nucleic Acids Res 37, D169–174.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D169-D174
-
-
-
15
-
-
0347755535
-
The database of interacting proteins: 2004 update
-
Salwinski, L., Miller, C. S., Smith, A. J., et al. (2004) The database of interacting proteins: 2004 update. Nucleic Acids Res 32, D449–451.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D449-D451
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
-
16
-
-
33644873184
-
BioGRID: A general repository for interaction datasets
-
Stark, C., Breitkreutz, B. J., Reguly, T., et al. (2006) BioGRID: a general repository for interaction datasets. Nucleic Acids Res 34, D535–539.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D535-D539
-
-
Stark, C.1
Breitkreutz, B.J.2
Reguly, T.3
-
17
-
-
58149177166
-
Reactome knowledgebase of human biological pathways and processes
-
Matthews, L., Gopinath, G., Gillespie, M., et al. (2009) Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res 37, D619–622.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D619-D622
-
-
Matthews, L.1
Gopinath, G.2
Gillespie, M.3
-
18
-
-
33947328242
-
Choosing negative examples for the prediction of protein-protein interactions
-
Ben-Hur, A., and Noble, W. (2006) Choosing negative examples for the prediction of protein-protein interactions., p S2. BMC Bioinformatics.
-
(2006)
BMC Bioinformatics
-
-
Ben-Hur, A.1
Noble, W.2
-
20
-
-
27544459288
-
A protocol for building and evaluating predictors of disease state based on microarray data
-
Wessels, L. F., Reinders, M. J., Hart, A. A., et al. (2005) A protocol for building and evaluating predictors of disease state based on microarray data. Bioinformatics 21, 3755–3762.
-
(2005)
Bioinformatics
, vol.21
, pp. 3755-3762
-
-
Wessels, L.F.1
Reinders, M.J.2
Hart, A.A.3
-
21
-
-
38549180536
-
COXPRESdb: A database of coex-pressed gene networks in mammals
-
Obayashi, T., Hayashi, S., Shibaoka, M., et al. (2008) COXPRESdb: a database of coex-pressed gene networks in mammals. Nucleic Acids Res 36, D77–82.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. D77-D82
-
-
Obayashi, T.1
Hayashi, S.2
Shibaoka, M.3
-
22
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
Su, A. I., Wiltshire, T., Batalov, S., et al. (2004) A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci USA 101, 6062–6067.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 6062-6067
-
-
Su, A.I.1
Wiltshire, T.2
Batalov, S.3
-
23
-
-
0000515372
-
InterPro: An integrated documentation resource for protein families, domains and functional sites
-
Mulder, N. J., Apweiler, R., Attwood, T. K., et al. (2002) InterPro: an integrated documentation resource for protein families, domains and functional sites. Brief Bioinform 3, 225–235.
-
(2002)
Brief Bioinform
, vol.3
, pp. 225-235
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
-
24
-
-
33845220382
-
IntNetDB v1.0: An integrated protein– protein interaction network database generated by a probabilistic model
-
Xia, K., Dong, D., and Han, J. D. (2006) IntNetDB v1.0: an integrated protein– protein interaction network database generated by a probabilistic model. BMC Bioinformatics 7, 508.
-
(2006)
BMC Bioinformatics
, vol.7
-
-
Xia, K.1
Dong, D.2
Han, J.D.3
-
25
-
-
33947095027
-
A human phenome–interactome network of protein complexes implicated in genetic disorders
-
Lage, K., Karlberg, E. O., Storling, Z. M., et al. (2007) A human phenome–interactome network of protein complexes implicated in genetic disorders. Nat Biotechnol 25, 309–316.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 309-316
-
-
Lage, K.1
Karlberg, E.O.2
Storling, Z.M.3
-
26
-
-
0036371537
-
Mining medline: Abstracts, sentences, or phrases
-
Ding, J., Berleant, D., Nettleton, D., Wurtele E. (2002) Mining medline: abstracts, sentences, or phrases, pp. 326–337, Pacific Symposium on Biocomputing.
-
(2002)
Pacific Symposium on Biocomputing
, pp. 326-337
-
-
Ding, J.1
Berleant, D.2
Nettleton, D.3
Wurtele, E.4
|