-
1
-
-
67650713931
-
The structural and functional diversity of metabolite-binding riboswitches
-
Roth A., and Breaker R.R. The structural and functional diversity of metabolite-binding riboswitches Annu. Rev. Biochem. 78 2009 305 334
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 305-334
-
-
Roth, A.1
Breaker, R.R.2
-
2
-
-
24644437810
-
RNA structure: Reading the ribosome
-
DOI 10.1126/science.1111771
-
Noller H.F. RNA structure: reading the ribosome Science 309 2005 1508 1514 (Pubitemid 41266466)
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1508-1514
-
-
Noller, H.F.1
-
3
-
-
33745862398
-
The biogenesis and regulation of telomerase holoenzymes
-
DOI 10.1038/nrm1961, PII NRM1961
-
Collins K. The biogenesis and regulation of telomerase holoenzymes Nat. Rev. Mol. Cell Biol. 7 2006 484 494 (Pubitemid 44036454)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.7
, pp. 484-494
-
-
Collins, K.1
-
4
-
-
17044419154
-
Targeting proteins to membranes: Structure of the signal recognition particle
-
Egea P.F., Stroud R.M., and Walter P. Targeting proteins to membranes: structure of the signal recognition particle Curr. Opin. Struct. Biol. 15 2005 213 220
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 213-220
-
-
Egea, P.F.1
Stroud, R.M.2
Walter, P.3
-
7
-
-
38449108345
-
RNA misfolding and the action of chaperones
-
DOI 10.2741/2557
-
Russell R. RNA misfolding and the action of chaperones Front. Biosci. 13 2008 1 20 (Pubitemid 351594760)
-
(2008)
Frontiers in Bioscience
, vol.13
, Issue.1
, pp. 1-20
-
-
Russell, R.1
-
8
-
-
0032549735
-
Kinetic intermediates trapped by native interactions in RNA folding
-
DOI 10.1126/science.279.5358.1943
-
Treiber D.K., Rook M.S., Zarrinkar P.P., and Williamson J.R. Kinetic intermediates trapped by native interactions in RNA folding Science 279 1998 1943 1946 (Pubitemid 28168650)
-
(1998)
Science
, vol.279
, Issue.5358
, pp. 1943-1946
-
-
Treiber, D.K.1
Rook, M.S.2
Zarrinkar, P.P.3
Williamson, J.R.4
-
9
-
-
33748936120
-
The Paradoxical Behavior of a Highly Structured Misfolded Intermediate in RNA Folding
-
DOI 10.1016/j.jmb.2006.08.024, PII S0022283606010382
-
Russell R., Das R., Suh H., Travers K.J., Laederach A., Engelhardt M.A., and Herschlag D. The paradoxical behavior of a highly structured misfolded intermediate in RNA folding J. Mol. Biol. 363 2006 531 544 (Pubitemid 44436255)
-
(2006)
Journal of Molecular Biology
, vol.363
, Issue.2
, pp. 531-544
-
-
Russell, R.1
Das, R.2
Suh, H.3
Travers, K.J.4
Laederach, A.5
Engelhardt, M.A.6
Herschlag, D.7
-
10
-
-
0037077127
-
A DEAD-Box protein functions as an ATP-dependent RNA chaperone in group I intron splicing
-
DOI 10.1016/S0092-8674(02)00771-7
-
Mohr S., Stryker J.M., and Lambowitz A.M. A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing Cell 109 2002 769 779 (Pubitemid 34722271)
-
(2002)
Cell
, vol.109
, Issue.6
, pp. 769-779
-
-
Mohr, S.1
Stryker, J.M.2
Lambowitz, A.M.3
-
11
-
-
0037188887
-
RNA chaperones exist and DEAD box proteins get a life
-
DOI 10.1016/S0092-8674(02)00804-8
-
Lorsch J.R. RNA chaperones exist and DEAD box proteins get a life. Cell 109 2002 797 800 (Pubitemid 34785994)
-
(2002)
Cell
, vol.109
, Issue.7
, pp. 797-800
-
-
Lorsch, J.R.1
-
12
-
-
0036600576
-
RNA folding in vivo
-
DOI 10.1016/S0959-440X(02)00325-1
-
Schroeder R., Grossberger R., Pichler A., and Waldsich C. RNA folding in vivo Curr. Opin. Struct. Biol. 12 2002 296 300 (Pubitemid 34804610)
-
(2002)
Current Opinion in Structural Biology
, vol.12
, Issue.3
, pp. 296-300
-
-
Schroeder, R.1
Grossberger, R.2
Pichler, A.3
Waldsich, C.4
-
13
-
-
78751662374
-
RNA folding in living cells
-
Zemora G., and Waldsich C. RNA folding in living cells RNA Biol. 7 2010 8 15
-
(2010)
RNA Biol.
, vol.7
, pp. 8-15
-
-
Zemora, G.1
Waldsich, C.2
-
14
-
-
0029163563
-
RNA chaperones and the RNA folding problem
-
Herschlag D. RNA chaperones and the RNA folding problem J. Biol. Chem. 270 1995 20871 20874
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 20871-20874
-
-
Herschlag, D.1
-
15
-
-
33749139723
-
Dead-box proteins: A family affair - Active and passive players in RNP-remodeling
-
DOI 10.1093/nar/gkl468
-
Linder P. Dead-box proteins: a family affair-active and passive players in RNP-remodeling Nucleic Acids Res. 34 2006 4168 4180 (Pubitemid 44542196)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.15
, pp. 4168-4180
-
-
Linder, P.1
-
17
-
-
41449091393
-
MRNA export: RNP remodeling by DEAD-box proteins
-
Linder P. mRNA export: RNP remodeling by DEAD-box proteins Curr. Biol. 18 2008 R297 R299
-
(2008)
Curr. Biol.
, vol.18
-
-
Linder, P.1
-
18
-
-
33749130843
-
Remodeling of ribonucleoprotein complexes with DExH/D RNA helicases
-
DOI 10.1093/nar/gkl410
-
Jankowsky E., and Bowers H. Remodeling of ribonucleoprotein complexes with DExH/D RNA helicases Nucleic Acids Res. 34 2006 4181 4188 (Pubitemid 44542197)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.15
, pp. 4181-4188
-
-
Jankowsky, E.1
Bowers, H.2
-
19
-
-
0032562239
-
The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide
-
DOI 10.1021/bi972430g
-
Lorsch J.R., and Herschlag D. The DEAD box protein eIF4A: 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide Biochemistry 37 1998 2180 2193 (Pubitemid 28119291)
-
(1998)
Biochemistry
, vol.37
, Issue.8
, pp. 2180-2193
-
-
Lorsch, J.R.1
Herschlag, D.2
-
20
-
-
58149503706
-
DEAD-box proteins can completely separate an RNA duplex using a single ATP
-
Chen Y., Potratz J.P., Tijerina P., Del Campo M., Lambowitz A.M., and Russell R. DEAD-box proteins can completely separate an RNA duplex using a single ATP Proc. Natl Acad. Sci. USA 105 2008 20203 20208
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 20203-20208
-
-
Chen, Y.1
Potratz, J.P.2
Tijerina, P.3
Del Campo, M.4
Lambowitz, A.M.5
Russell, R.6
-
21
-
-
58149481225
-
ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding
-
Liu F., Putnam A., and Jankowsky E. ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding Proc. Natl Acad. Sci. USA 105 2008 20209 20214
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 20209-20214
-
-
Liu, F.1
Putnam, A.2
Jankowsky, E.3
-
22
-
-
39649096274
-
The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA
-
Henn A., Cao W., Hackney D.D., and De La Cruz E.M. The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA J. Mol. Biol. 377 2008 193 205
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 193-205
-
-
Henn, A.1
Cao, W.2
Hackney, D.D.3
De La Cruz, E.M.4
-
23
-
-
79956103194
-
Mechanism of Mss116 ATPase reveals functional diversity of DEAD-box proteins
-
Cao W., Coman M.M., Ding S., Henn A., Middleton E.R., and Bradley M.J. Mechanism of Mss116 ATPase reveals functional diversity of DEAD-box proteins J. Mol. Biol. 409 2011 399 414
-
(2011)
J. Mol. Biol.
, vol.409
, pp. 399-414
-
-
Cao, W.1
Coman, M.M.2
Ding, S.3
Henn, A.4
Middleton, E.R.5
Bradley, M.J.6
-
24
-
-
33749332762
-
Structure of the exon junction core complex with a trapped DEAD-Box ATPase bound to RNA
-
DOI 10.1126/science.1131981
-
Andersen C.B., Ballut L., Johansen J.S., Chamieh H., Nielsen K.H., and Oliveira C.L. Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA Science 313 2006 1968 1972 (Pubitemid 44498005)
-
(2006)
Science
, vol.313
, Issue.5795
, pp. 1968-1972
-
-
Andersen, C.B.F.1
Ballut, L.2
Johansen, J.S.3
Chamieh, H.4
Nielsen, K.H.5
Oliveira, C.L.P.6
Pedersen, J.S.7
Seraphin, B.8
Hir, H.L.9
Andersen, G.R.10
-
25
-
-
33747182255
-
The Crystal Structure of the Exon Junction Complex Reveals How It Maintains a Stable Grip on mRNA
-
DOI 10.1016/j.cell.2006.08.006, PII S0092867406010270
-
Bono F., Ebert J., Lorentzen E., and Conti E. The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA Cell 126 2006 713 725 (Pubitemid 44233638)
-
(2006)
Cell
, vol.126
, Issue.4
, pp. 713-725
-
-
Bono, F.1
Ebert, J.2
Lorentzen, E.3
Conti, E.4
-
26
-
-
34347385000
-
RNA helicases - one fold for many functions
-
DOI 10.1016/j.sbi.2007.05.007, PII S0959440X07000723, Nucleic acids / Sequences and topology
-
Jankowsky E., and Fairman M.E. RNA helicases-one fold for many functions Curr. Opin. Struct. Biol. 17 2007 316 324 (Pubitemid 47021361)
-
(2007)
Current Opinion in Structural Biology
, vol.17
, Issue.3
, pp. 316-324
-
-
Jankowsky, E.1
Fairman, M.E.2
-
27
-
-
84872575238
-
Mechanisms of DEAD-box proteins in ATP-dependent processes
-
E. Jankowsky, Royal Society of Chemistry Cambridge, UK RSC Biomolecular Sciences No. 19
-
Potratz J.P., Tijerina P., and Russell R. Mechanisms of DEAD-box proteins in ATP-dependent processes E. Jankowsky, RNA Helicases 2010 Royal Society of Chemistry Cambridge, UK 61 98 RSC Biomolecular Sciences No. 19
-
(2010)
RNA Helicases
, pp. 61-98
-
-
Potratz, J.P.1
Tijerina, P.2
Russell, R.3
-
28
-
-
70350089113
-
The mechanism of ATP-dependent RNA unwinding by DEAD box proteins
-
Hilbert M., Karow A.R., and Klostermeier D. The mechanism of ATP-dependent RNA unwinding by DEAD box proteins Biol. Chem. 390 2009 1237 1250
-
(2009)
Biol. Chem.
, vol.390
, pp. 1237-1250
-
-
Hilbert, M.1
Karow, A.R.2
Klostermeier, D.3
-
29
-
-
79956071179
-
DEAD-box proteins as RNA helicases and chaperones
-
Jarmoskaite I., and Russell R. DEAD-box proteins as RNA helicases and chaperones WIREs RNA 2 2011 135 152
-
(2011)
WIREs RNA
, vol.2
, pp. 135-152
-
-
Jarmoskaite, I.1
Russell, R.2
-
30
-
-
78650854687
-
RNA helicases at work: Binding and rearranging
-
Jankowsky E. RNA helicases at work: binding and rearranging Trends Biochem. Sci. 36 2011 19 29
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 19-29
-
-
Jankowsky, E.1
-
31
-
-
0022552726
-
The generality of self-splicing RNA: Relationship to nuclear mRNA splicing
-
Cech T.R. The generality of self-splicing RNA: relationship to nuclear mRNA splicing Cell 44 1986 207 210 (Pubitemid 16048206)
-
(1986)
Cell
, vol.44
, Issue.2
, pp. 207-210
-
-
Cech, T.R.1
-
32
-
-
0030968710
-
Mechanistic aspects of enzymatic catalysis: Lessons from comparison of RNA and protein enzymes
-
DOI 10.1146/annurev.biochem.66.1.19
-
Narlikar G.J., and Herschlag D. Mechanistic aspects of enzymatic catalysis: lessons from comparison of RNA and protein enzymes Annu. Rev. Biochem. 66 1997 19 59 (Pubitemid 27274651)
-
(1997)
Annual Review of Biochemistry
, vol.66
, pp. 19-59
-
-
Narlikar, G.J.1
Herschlag, D.2
-
33
-
-
33847676447
-
Folding of group II introns: A model system for large, multidomain RNAs?
-
DOI 10.1016/j.tibs.2007.01.005, PII S096800040700031X
-
Pyle A.M., Fedorova O., and Waldsich C. Folding of group II introns: a model system for large, multidomain RNAs? Trends Biochem. Sci. 32 2007 138 145 (Pubitemid 46367692)
-
(2007)
Trends in Biochemical Sciences
, vol.32
, Issue.3
, pp. 138-145
-
-
Pyle, A.M.1
Fedorova, O.2
Waldsich, C.3
-
34
-
-
78751654158
-
Group II introns: Mobile ribozymes that invade DNA
-
R.F. Gesteland, T.R. Cech, J.F. Atkins, Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY doi:1.a003616
-
Lambowitz A.M., and Zimmerly S. Group II introns: mobile ribozymes that invade DNA R.F. Gesteland, T.R. Cech, J.F. Atkins, RNA Worlds: From Life's Origins to Diversity in Gene Regulation, Cold Spring Harbor Perspectives in Biology 2010 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY doi:1.a003616
-
(2010)
RNA Worlds: From Life's Origins to Diversity in Gene Regulation, Cold Spring Harbor Perspectives in Biology
-
-
Lambowitz, A.M.1
Zimmerly, S.2
-
35
-
-
11844297811
-
The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function
-
DOI 10.1073/pnas.0407896101
-
Huang H.R., Rowe C.E., Mohr S., Jiang Y., Lambowitz A.M., and Perlman P.S. The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function Proc. Natl Acad. Sci. USA 102 2005 163 168 (Pubitemid 40094446)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.1
, pp. 163-168
-
-
Huang, H.-R.1
Rowe, C.E.2
Mohr, S.3
Jiang, Y.4
Lambowitz, A.M.5
Perlman, P.S.6
-
36
-
-
33644852160
-
A DEAD-box protein alone promotes group II intron splicing and reverse splicing by acting as an RNA chaperone
-
DOI 10.1073/pnas.0600332103
-
Mohr S., Matsuura M., Perlman P.S., and Lambowitz A.M. A DEAD-box protein alone promotes group II intron splicing and reverse splicing by acting as an RNA chaperone Proc. Natl Acad. Sci. USA 103 2006 3569 3574 (Pubitemid 43376596)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.10
, pp. 3569-3574
-
-
Mohr, S.1
Matsuura, M.2
Perlman, P.S.3
Lambowitz, A.M.4
-
37
-
-
33847652952
-
A DEAD protein that activates intron self-splicing without unwinding RNA
-
DOI 10.1016/j.molcel.2006.10.032
-
Solem A., Zingler N., and Pyle A.M. A DEAD protein that activates intron self-splicing without unwinding RNA Mol. Cell 24 2006 611 617 (Pubitemid 350284227)
-
(2006)
Molecular Cell
, vol.24
, Issue.4
, pp. 611-617
-
-
Solem, A.1
Zingler, N.2
Pyle, A.M.3
-
38
-
-
33845738802
-
Involvement of DEAD-box Proteins in Group I and Group II Intron Splicing. Biochemical Characterization of Mss116p, ATP Hydrolysis-dependent and -independent Mechanisms, and General RNA Chaperone Activity
-
DOI 10.1016/j.jmb.2006.09.083, PII S0022283606013076
-
Halls C., Mohr S., Del Campo M., Yang Q., Jankowsky E., and Lambowitz A.M. Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity J. Mol. Biol. 365 2007 835 855 (Pubitemid 46001664)
-
(2007)
Journal of Molecular Biology
, vol.365
, Issue.3
, pp. 835-855
-
-
Halls, C.1
Mohr, S.2
Del Campo, M.3
Yang, Q.4
Jankowsky, E.5
Lambowitz, A.M.6
-
39
-
-
67349117103
-
Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones
-
Del Campo M., Mohr S., Jiang Y., Jia H., Jankowsky E., and Lambowitz A.M. Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones J. Mol. Biol. 389 2009 674 693
-
(2009)
J. Mol. Biol.
, vol.389
, pp. 674-693
-
-
Del Campo, M.1
Mohr, S.2
Jiang, Y.3
Jia, H.4
Jankowsky, E.5
Lambowitz, A.M.6
-
40
-
-
33750936780
-
Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone
-
DOI 10.1073/pnas.0603127103
-
Tijerina P., Bhaskaran H., and Russell R. Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone Proc. Natl Acad. Sci. USA 103 2006 16698 16703 (Pubitemid 44737316)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.45
, pp. 16698-16703
-
-
Tijerina, P.1
Bhaskaran, H.2
Russell, R.3
-
41
-
-
35548989806
-
Kinetic redistribution of native and misfolded RNAs by a DEAD-box chaperone
-
DOI 10.1038/nature06235, PII NATURE06235
-
Bhaskaran H., and Russell R. Kinetic redistribution of native and misfolded RNAs by a DEAD-box chaperone Nature 449 2007 1014 1018 (Pubitemid 350014602)
-
(2007)
Nature
, vol.449
, Issue.7165
, pp. 1014-1018
-
-
Bhaskaran, H.1
Russell, R.2
-
42
-
-
52949136970
-
A DExH/D-box protein coordinates the two steps of splicing in a group i intron
-
Bifano A.L., and Caprara M.G. A DExH/D-box protein coordinates the two steps of splicing in a group I intron J. Mol. Biol. 383 2008 667 682
-
(2008)
J. Mol. Biol.
, vol.383
, pp. 667-682
-
-
Bifano, A.L.1
Caprara, M.G.2
-
43
-
-
49749103581
-
SHAPE analysis of long-range interactions reveals extensive and thermodynamically preferred misfolding in a fragile group i intron RNA
-
Duncan C.D., and Weeks K.M. SHAPE analysis of long-range interactions reveals extensive and thermodynamically preferred misfolding in a fragile group I intron RNA Biochemistry 47 2008 8504 8513
-
(2008)
Biochemistry
, vol.47
, pp. 8504-8513
-
-
Duncan, C.D.1
Weeks, K.M.2
-
44
-
-
78751676793
-
Roles of DEAD-box proteins in RNA and RNP folding
-
Pan C., and Russell R. Roles of DEAD-box proteins in RNA and RNP folding RNA Biol. 7 2010 28 37
-
(2010)
RNA Biol.
, vol.7
, pp. 28-37
-
-
Pan, C.1
Russell, R.2
-
45
-
-
41749109563
-
Crystal structure of a self-spliced group II intron
-
DOI 10.1126/science.1153803
-
Toor N., Keating K.S., Taylor S.D., and Pyle A.M. Crystal structure of a self-spliced group II intron Science 320 2008 77 82 (Pubitemid 351490756)
-
(2008)
Science
, vol.320
, Issue.5872
, pp. 77-82
-
-
Toor, N.1
Keating, K.S.2
Taylor, S.D.3
Pyle, A.M.4
-
46
-
-
43449125871
-
A three-dimensional model of a group II intron RNA and its interaction with the intron-encoded reverse transcriptase
-
Dai L., Chai D., Gu S.Q., Gabel J., Noskov S.Y., and Blocker F.J. A three-dimensional model of a group II intron RNA and its interaction with the intron-encoded reverse transcriptase Mol. Cell 30 2008 472 485
-
(2008)
Mol. Cell
, vol.30
, pp. 472-485
-
-
Dai, L.1
Chai, D.2
Gu, S.Q.3
Gabel, J.4
Noskov, S.Y.5
Blocker, F.J.6
-
47
-
-
63549105637
-
The ribozyme core of group II introns: A structure in want of partners
-
Michel F., Costa M., and Westhof E. The ribozyme core of group II introns: a structure in want of partners Trends Biochem. Sci. 34 2009 189 199
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 189-199
-
-
Michel, F.1
Costa, M.2
Westhof, E.3
-
48
-
-
0022551978
-
A self-splicing RNA excises an intron lariat
-
Peebles C.L., Perlman P.S., Mecklenburg K.L., Petrillo M.L., Tabor J.H., Jarrell K.A., and Cheng H.L. A self-splicing RNA excises an intron lariat Cell 44 1986 213 223 (Pubitemid 16048207)
-
(1986)
Cell
, vol.44
, Issue.2
, pp. 213-223
-
-
Peebles, C.L.1
Perlman, P.S.2
Mecklenburg, K.L.3
-
49
-
-
0036304522
-
Productive folding to the native state by a group II intron ribozyme
-
DOI 10.1006/jmbi.2001.5233
-
Swisher J.F., Su L.J., Brenowitz M., Anderson V.E., and Pyle A.M. Productive folding to the native state by a group II intron ribozyme J. Mol. Biol. 315 2002 297 310 (Pubitemid 34729341)
-
(2002)
Journal of Molecular Biology
, vol.315
, Issue.3
, pp. 297-310
-
-
Swisher, J.F.1
Su, L.J.2
Brenowitz, M.3
Anderson, V.E.4
Pyle, A.M.5
-
50
-
-
0242636400
-
An alternative route for the folding of large RNAs: Apparent two-state folding by a group II intron ribozyme
-
DOI 10.1016/j.jmb.2003.09.071
-
Su L.J., Brenowitz M., and Pyle A.M. An alternative route for the folding of large RNAs: apparent two-state folding by a group II intron ribozyme J. Mol. Biol. 334 2003 639 652 (Pubitemid 37433882)
-
(2003)
Journal of Molecular Biology
, vol.334
, Issue.4
, pp. 639-652
-
-
Su, L.J.1
Brenowitz, M.2
Pyle, A.M.3
-
51
-
-
34948833173
-
Do DEAD-Box Proteins Promote Group II Intron Splicing without Unwinding RNA?
-
DOI 10.1016/j.molcel.2007.07.028, PII S109727650700545X
-
Del Campo M., Tijerina P., Bhaskaran H., Mohr S., Yang Q., and Jankowsky E. Do DEAD-box proteins promote group II intron splicing without unwinding RNA? Mol. Cell 28 2007 159 166 (Pubitemid 47531967)
-
(2007)
Molecular Cell
, vol.28
, Issue.1
, pp. 159-166
-
-
Del Campo, M.1
Tijerina, P.2
Bhaskaran, H.3
Mohr, S.4
Yang, Q.5
Jankowsky, E.6
Russell, R.7
Lambowitz, A.M.8
-
52
-
-
33846637337
-
Group II Intron Folding under Near-physiological Conditions: Collapsing to the Near-native State
-
DOI 10.1016/j.jmb.2006.12.003, PII S0022283606016500
-
Fedorova O., Waldsich C., and Pyle A.M. Group II intron folding under near-physiological conditions: collapsing to the near-native state J. Mol. Biol. 366 2007 1099 1114 (Pubitemid 46186386)
-
(2007)
Journal of Molecular Biology
, vol.366
, Issue.4
, pp. 1099-1114
-
-
Fedorova, O.1
Waldsich, C.2
Pyle, A.M.3
-
53
-
-
77649337588
-
Protein-facilitated folding of group II intron ribozymes
-
Fedorova O., Solem A., and Pyle A.M. Protein-facilitated folding of group II intron ribozymes J. Mol. Biol. 397 2010 799 813
-
(2010)
J. Mol. Biol.
, vol.397
, pp. 799-813
-
-
Fedorova, O.1
Solem, A.2
Pyle, A.M.3
-
55
-
-
78049293801
-
Dual roles for the Mss116 cofactor during splicing of the ai5γ group II intron
-
Zingler N., Solem A., and Pyle A.M. Dual roles for the Mss116 cofactor during splicing of the ai5γ group II intron Nucleic Acids Res. 38 2010 6602 6609
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 6602-6609
-
-
Zingler, N.1
Solem, A.2
Pyle, A.M.3
-
56
-
-
78049234242
-
Single-molecule analysis of Mss116-mediated group II intron folding
-
Karunatilaka K.S., Solem A., Pyle A.M., and Rueda D. Single-molecule analysis of Mss116-mediated group II intron folding Nature 467 2010 935 939
-
(2010)
Nature
, vol.467
, pp. 935-939
-
-
Karunatilaka, K.S.1
Solem, A.2
Pyle, A.M.3
Rueda, D.4
-
57
-
-
0024022167
-
Group II intron domain 5 facilitates a trans-splicing reaction
-
Jarrell K.A., Dietrich R.C., and Perlman P.S. Group II intron domain 5 facilitates a trans-splicing reaction Mol. Cell. Biol. 8 1988 2361 2366
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 2361-2366
-
-
Jarrell, K.A.1
Dietrich, R.C.2
Perlman, P.S.3
-
58
-
-
0031779553
-
Influence of substrate structure on in vitro ribozyme activity of a group II intron
-
DOI 10.1017/S1355838298980165
-
Nolte A., Chanfreau G., and Jacquier A. Influence of substrate structure on in vitro ribozyme activity of a group II intron RNA 4 1998 694 708 (Pubitemid 28252751)
-
(1998)
RNA
, vol.4
, Issue.6
, pp. 694-708
-
-
Nolte, A.1
Chanfreau, G.2
Jacquier, A.3
-
59
-
-
0035901549
-
Visualizing the solvent-inaccessible core of a group II intron ribozyme
-
DOI 10.1093/emboj/20.8.2051
-
Swisher J., Duarte C.M., Su L.J., and Pyle A.M. Visualizing the solvent-inaccessible core of a group II intron ribozyme EMBO J. 20 2001 2051 2061 (Pubitemid 32397406)
-
(2001)
EMBO Journal
, vol.20
, Issue.8
, pp. 2051-2061
-
-
Swisher, J.1
Duarte, C.M.2
Su, L.J.3
Pyle, A.M.4
-
60
-
-
2942571539
-
The Comparative RNA Web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D'Souza L.M., and Du Y. The Comparative RNA Web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs BMC Bioinf. 3 2002 2
-
(2002)
BMC Bioinf.
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
-
61
-
-
77954620513
-
Catalytic activity as a probe of native RNA folding
-
Wan Y., Mitchell D., and Russell R. Catalytic activity as a probe of native RNA folding Methods Enzymol. 468 2009 195 218
-
(2009)
Methods Enzymol.
, vol.468
, pp. 195-218
-
-
Wan, Y.1
Mitchell, D.2
Russell, R.3
-
62
-
-
0035906731
-
Probing the folding landscape of the Tetrahymena ribozyme: Commitment to form the native conformation is late in the folding pathway
-
DOI 10.1006/jmbi.2001.4751
-
Russell R., and Herschlag D. Probing the folding landscape of the Tetrahymena ribozyme: commitment to form the native conformation is late in the folding pathway J. Mol. Biol. 308 2001 839 851 (Pubitemid 32574363)
-
(2001)
Journal of Molecular Biology
, vol.308
, Issue.5
, pp. 839-851
-
-
Russell, R.1
Herschlag, D.2
-
63
-
-
77954621718
-
Multiple unfolding events during native folding of the Tetrahymena group i ribozyme
-
Wan Y., Suh H., Russell R., and Herschlag D. Multiple unfolding events during native folding of the Tetrahymena group I ribozyme J. Mol. Biol. 400 2010 1067 1077
-
(2010)
J. Mol. Biol.
, vol.400
, pp. 1067-1077
-
-
Wan, Y.1
Suh, H.2
Russell, R.3
Herschlag, D.4
-
64
-
-
29244449617
-
An obligate intermediate along the slow folding pathway of a group II intron ribozyme
-
DOI 10.1093/nar/gki973
-
Su L.J., Waldsich C., and Pyle A.M. An obligate intermediate along the slow folding pathway of a group II intron ribozyme Nucleic Acids Res. 33 2005 6674 6687 (Pubitemid 41830475)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.21
, pp. 6674-6687
-
-
Su, L.J.1
Waldsich, C.2
Pyle, A.M.3
-
65
-
-
77951625452
-
Structure-guided mutational analysis of a yeast DEAD-box protein involved in mitochondrial RNA splicing
-
Bifano A.L., Turk E.M., and Caprara M.G. Structure-guided mutational analysis of a yeast DEAD-box protein involved in mitochondrial RNA splicing J. Mol. Biol. 398 2010 429 443
-
(2010)
J. Mol. Biol.
, vol.398
, pp. 429-443
-
-
Bifano, A.L.1
Turk, E.M.2
Caprara, M.G.3
-
66
-
-
0025975586
-
Alternative secondary structures in the 5′ exon affect both forward and reverse self-splicing of the Tetrahymena intervening sequence RNA
-
Woodson S.A., and Cech T.R. Alternative secondary structures in the 5′ exon affect both forward and reverse self-splicing of the Tetrahymena intervening sequence RNA Biochemistry 30 1991 2042 2050
-
(1991)
Biochemistry
, vol.30
, pp. 2042-2050
-
-
Woodson, S.A.1
Cech, T.R.2
-
67
-
-
0027473596
-
An alternative helix in the 26S rRNA promotes excision and integration of the Tetrahymena intervening sequence
-
Woodson S.A., and Emerick V.L. An alternative helix in the 26S rRNA promotes excision and integration of the Tetrahymena intervening sequence Mol. Cell. Biol. 13 1993 1137 1145 (Pubitemid 23040280)
-
(1993)
Molecular and Cellular Biology
, vol.13
, Issue.2
, pp. 1137-1145
-
-
Woodson, S.A.1
Emerick, V.L.2
-
68
-
-
0026680746
-
Mutational analysis of a DEAD box RNA helicase: The mammalian translation initiation factor eIF-4A
-
Pause A., and Sonenberg N. Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A EMBO J. 11 1992 2643 2654
-
(1992)
EMBO J.
, vol.11
, pp. 2643-2654
-
-
Pause, A.1
Sonenberg, N.2
-
69
-
-
67949115632
-
A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN
-
Karow A.R., and Klostermeier D. A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN Nucleic Acids Res. 37 2009 4464 4471
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4464-4471
-
-
Karow, A.R.1
Klostermeier, D.2
-
70
-
-
77950349699
-
Motif III in superfamily 2 "helicases" helps convert the binding energy of ATP into a high-affinity RNA binding site in the yeast DEAD-box protein Ded1
-
Banroques J., Doere M., Dreyfus M., Linder P., and Tanner N.K. Motif III in superfamily 2 "helicases" helps convert the binding energy of ATP into a high-affinity RNA binding site in the yeast DEAD-box protein Ded1 J. Mol. Biol. 396 2010 949 966
-
(2010)
J. Mol. Biol.
, vol.396
, pp. 949-966
-
-
Banroques, J.1
Doere, M.2
Dreyfus, M.3
Linder, P.4
Tanner, N.K.5
-
71
-
-
33846096930
-
A folding control element for tertiary collapse of a group II intron ribozyme
-
DOI 10.1038/nsmb1181, PII NSMB1181
-
Waldsich C., and Pyle A.M. A folding control element for tertiary collapse of a group II intron ribozyme Nat. Struct. Mol. Biol. 14 2007 37 44 (Pubitemid 46067421)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.1
, pp. 37-44
-
-
Waldsich, C.1
Pyle, A.M.2
-
72
-
-
37749022256
-
Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro
-
Mohr G., Del Campo M., Mohr S., Yang Q., Jia H., Jankowsky E., and Lambowitz A.M. Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro J. Mol. Biol. 375 2008 1344 1364
-
(2008)
J. Mol. Biol.
, vol.375
, pp. 1344-1364
-
-
Mohr, G.1
Del Campo, M.2
Mohr, S.3
Yang, Q.4
Jia, H.5
Jankowsky, E.6
Lambowitz, A.M.7
-
73
-
-
0033520410
-
New pathways in folding of the Tetrahymena group I RNA enzyme
-
DOI 10.1006/jmbi.1999.3026
-
Russell R., and Herschlag D. New pathways in folding of the Tetrahymena group I RNA enzyme J. Mol. Biol. 291 1999 1155 1167 (Pubitemid 29423778)
-
(1999)
Journal of Molecular Biology
, vol.291
, Issue.5
, pp. 1155-1167
-
-
Russell, R.1
Herschlag, D.2
|