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Volumn 760, Issue , 2011, Pages 141-157

Application of Gene Ontology to Gene Identification

Author keywords

Gene identification; gene ontology; information content; protein functional annotation; semantic similarity

Indexed keywords

ARTICLE; COMPUTER PROGRAM; GENETIC ASSOCIATION; HUMAN; INFORMATION RETRIEVAL; INTERNET; METHODOLOGY; MOLECULAR GENETICS; PROTEIN DATABASE; PROTEOMICS;

EID: 79960906222     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-176-5_9     Document Type: Chapter
Times cited : (13)

References (26)
  • 1
    • 0036255811 scopus 로고    scopus 로고
    • Candidate-gene approaches for studying complex genetic traits: Practical considerations
    • Tabor, H. K., Risch, N. J., and Meyers, R. M. (2002) Candidate-gene approaches for studying complex genetic traits: practical considerations. Nat Rev Genet 3, 391–397.
    • (2002) Nat Rev Genet , vol.3 , pp. 391-397
    • Tabor, H.K.1    Risch, N.J.2    Meyers, R.M.3
  • 2
    • 36249020808 scopus 로고    scopus 로고
    • Candidate gene identification approach: Progress and challenges
    • Zhu, M., and Zhao, S. (2010) Candidate gene identification approach: progress and challenges. Int J Biol Sci 3, 420–427.
    • (2010) Int J Biol Sci , vol.3 , pp. 420-427
    • Zhu, M.1    Zhao, S.2
  • 3
    • 33845545435 scopus 로고    scopus 로고
    • The modular nature of genetic diseases
    • Oti, M., and Brunner, H. G. (2007) The modular nature of genetic diseases. Clin Genet 71, 1–11.
    • (2007) Clin Genet , vol.71 , pp. 1-11
    • Oti, M.1    Brunner, H.G.2
  • 4
    • 33748792021 scopus 로고    scopus 로고
    • Bio-ontologies: Current trends and future directions
    • Bodenreider O., and Stevens, R. (2006) Bio-ontologies: current trends and future directions. Brief Bioinfo 7, 256–274.
    • (2006) Brief Bioinfo , vol.7 , pp. 256-274
    • Bodenreider, O.1    Stevens, R.2
  • 5
    • 0034069495 scopus 로고    scopus 로고
    • The gene ontology tool for the unification of biology
    • Nat Genet
    • Gene Ontology Consortium (2000) The gene ontology tool for the unification of biology. Nat Genet 25, 25–29.
    • (2000) Gene Ontology Consortium , vol.25 , pp. 25-29
  • 8
    • 24644470505 scopus 로고    scopus 로고
    • Ontological analysis of gene expression data: Current tools, limitations, and open problems
    • Khatri, P., and Drăghici, S. (2005) Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics 21, 3587–3595.
    • (2005) Bioinformatics , vol.21 , pp. 3587-3595
    • Khatri, P.1    Drăghici, S.2
  • 9
    • 33847264343 scopus 로고    scopus 로고
    • Enrichment or depletion of a GO category within a class of genes: Which test?
    • Rivals, I., Personnaz, L., Taing, L., and Potier MC. (2007) Enrichment or depletion of a GO category within a class of genes: which test? Bioinformatics 23, 401–407.
    • (2007) Bioinformatics , vol.23 , pp. 401-407
    • Rivals, I.1    Personnaz, L.2    Taing, L.3    Potier, M.C.4
  • 10
    • 69349101273 scopus 로고    scopus 로고
    • Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology
    • Xu, T., Gu, J., Zhou, Y., and Du, L. (2009) Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology. BMC Bioinformatics 10, 240.
    • (2009) BMC Bioinformatics , vol.10
    • Xu, T.1    Gu, J.2    Zhou, Y.3    Du, L.4
  • 11
    • 78649872123 scopus 로고    scopus 로고
    • Serum proteomics signature of cystic fibrosis patients: A complementary 2-DE and LC-MS/MS approach
    • Charro, N., Hood, B. L., Pacheco, P., et al. (2011) Serum proteomics signature of cystic fibrosis patients: a complementary 2-DE and LC-MS/MS approach. J Proteome Res 74, 110–126.
    • (2011) J Proteome Res , vol.74 , pp. 110-126
    • Charro, N.1    Hood, B.L.2    Pacheco, P.3
  • 12
    • 58149187893 scopus 로고    scopus 로고
    • The GOA database in 2009 – an integrated Gene Ontology Annotation resource
    • Barrell, D., Dimmer, E., Huntley, R. P., et al. (2009) The GOA database in 2009 – an integrated Gene Ontology Annotation resource. Nucleic Acids Res 37, D396–D403.
    • (2009) Nucleic Acids Res , vol.37 , pp. D396-D403
    • Barrell, D.1    Dimmer, E.2    Huntley, R.P.3
  • 13
    • 47149083877 scopus 로고    scopus 로고
    • Metrics for GO based protein semantic similarity: A systematic evaluation
    • Pesquita, C., Faria, D., Bastos, H., et al. (2008) Metrics for GO based protein semantic similarity: a systematic evaluation. BMC Bioinformatics 9, S4.
    • (2008) BMC Bioinformatics , vol.9
    • Pesquita, C.1    Faria, D.2    Bastos, H.3
  • 18
  • 20
    • 68249087607 scopus 로고    scopus 로고
    • Semantic Similarity in Biomedical Ontologies
    • Pesquita, C., Faria, D., Falcão, A. O., et al. (2009) Semantic Similarity in Biomedical Ontologies. PLoS Comput Biol 5, e1000443.
    • (2009) Plos Comput Biol , vol.5
    • Pesquita, C.1    Faria, D.2    Falcão, A.O.3
  • 22
    • 0037480738 scopus 로고    scopus 로고
    • Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation
    • Lord, P., Stevens, R., Brass, A., and Goble, C. (2003) Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 19, 1275–1283.
    • (2003) Bioinformatics , vol.19 , pp. 1275-1283
    • Lord, P.1    Stevens, R.2    Brass, A.3    Goble, C.4
  • 23
    • 33645821454 scopus 로고    scopus 로고
    • Assessing semantic similarity measures for the characterization of human regulatory pathways
    • Guo, X., Liu, R., Shriver, C. D., Hu, H., and Liebman, M. N. (2006) Assessing semantic similarity measures for the characterization of human regulatory pathways. Bioinformatics 22, 967–973.
    • (2006) Bioinformatics , vol.22 , pp. 967-973
    • Guo, X.1    Liu, R.2    Shriver, C.D.3    Hu, H.4    Liebman, M.N.5
  • 24
    • 75549087047 scopus 로고    scopus 로고
    • The IntAct molecular interaction database in 2010
    • Aranda, B., Achuthan, P., Alam-Faruque, Y., et al. (2010) The IntAct molecular interaction database in 2010. Nucleic Acids Res 38(Database issue), D525–D531.
    • (2010) Nucleic Acids Res , vol.38 , Issue.Database , pp. D525-D531
    • Aranda, B.1    Achuthan, P.2    Alam-Faruque, Y.3
  • 25
    • 75849153303 scopus 로고    scopus 로고
    • UniProt Consortium (2010) The Universal Protein Resource (UniProt) in 2010
    • Database issue
    • UniProt Consortium (2010) The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res 38(Database issue), D142–D148.
    • Nucleic Acids Res , vol.38 , pp. D142-D148
  • 26
    • 85139174995 scopus 로고    scopus 로고
    • Faria, D. Pesquita, C., Couto F. M. and Falcão A. (2007) ProteInOn: a web tool for protein semantic similarity. DI/FCUL TR 07-6, Department of Informatics, University of Lisbon.
    • Faria, D. Pesquita, C., Couto F. M. and Falcão A. (2007) ProteInOn: a web tool for protein semantic similarity. DI/FCUL TR 07-6, Department of Informatics, University of Lisbon.


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