Molecular genome tracking of East, Central and South African genotype of Chikungunya virus in South-east Asia between 2006 and 2009

Asian Pacific Journal of Tropical Medicine

Volumn 4, Issue 7, 2011, Pages 535-540

  Suwannakarn, Kamol ^a   Theamboonlers, Apiradee ^a   Poovorawan, Yong ^a  

^a CHULALONGKORN UNIVERSITY   (Thailand)

Author keywords

Chikungunya virus; East Central and South African genotype; Evolutionary parameter; Genomic signature

Indexed keywords

AMINO ACID SEQUENCE; ANALYTICAL PARAMETERS; ARTICLE; BAYESIAN MARKOV CHAIN MONTE CARLO METHOD; CHIKUNGUNYA ALPHAVIRUS; CHINA; CONTROLLED STUDY; EVOLUTIONARY PARAMETER; EVOLUTIONARY RATE; GENETIC VARIABILITY; GENOME ANALYSIS; GENOTYPE; GEOGRAPHIC DISTRIBUTION; INDIA; INDIAN OCEAN; MALAYSIA; MOLECULAR EPIDEMIOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENOME TRACKING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEASHORE; SINGAPORE; SOUTHEAST ASIA; SRI LANKA; STATISTICAL ANALYSIS; THAILAND; VIRUS ISOLATION; VIRUS STRAIN; VIRUS TRANSMISSION;

ALPHAVIRUS INFECTIONS; ASIA, SOUTHEASTERN; CHIKUNGUNYA VIRUS; EVOLUTION, MOLECULAR; GENOME, VIRAL; GENOTYPE; HUMANS; PHYLOGENY; PHYLOGEOGRAPHY; VIRAL PROTEINS;

EID: 79960854513     PISSN: 19957645     EISSN: 19957645     Source Type: Journal    
DOI: 10.1016/S1995-7645(11)60141-7     Document Type: Article

References (27)

1. Schuffenecker I, Iteman I, Michault A, Murri S, Frangeul L, Vaney MC, et al. Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak. PLoS Med 2006, 3(7):e263.
2. Rezza G, Nicoletti L, Angelini R, Romi R, Finarelli AC, Panning M, et al. Infection with chikungunya virus in Italy: an outbreak in a temperate region. Lancet 2007, 370(9602):1840-1846.
3. Jupp PG, McIntosh BM Chikungunya disease. The arboviruses: epidemiology and ecology 1988, 137-157. CRC Press, Boca Raton. T.P. Monath (Ed.).
4. Ross RW Original isolation and characteristics of chikungunya virus. J Hyg 1956, 54:192-200.
5. Khan AH, Morita K, Parquet MMC, Hasebe F, Mathenge EG, Igarashi A Complete nucleotide sequence of chikungunya virus and evidence for an internal polyadenylation site. J Gen Virol 2002, 83(Pt 12):3075-3084.
6. Powers AM, Brault AC, Tesh RB, Weaver SC Re-emergence of chikungunya and o'nyong-nyong viruses: evidence for distinct geographical lineages and distant evolutionary relationships. J Gen Virol 2000, 81(Pt 2):471-479.
7. Reiter P, Fontenille D, Paupy C Aedes albopictus as an epidemic vector of chikungunya virus: another emerging problem?. Lancet Infect Dis 2006, 6(8):463-464.
8. Kumar NP, Joseph R, Kamaraj T, Jambulingam P A226V mutation in virus during the 2007 chikungunya outbreak in Kerala, India. J Gen Virol 2008, 89(Pt 8):1945-1948.
9. Santhosh SR, Dash PK, Parida MM, Khan M, Tiwari M, Lakshmana Rao PV Comparative full genome analysis revealed E1: A226V shift in 2007 Indian chikungunya virus isolates. Virus Res 2008, 135(1):36-41.
10. Tsetsarkin KA, Vanlandingham DL, McGee CE, Higgs S A single mutation in chikungunya virus affects vector specificity and epidemic potential. PLoS Pathog 2007, 3(12):e201.
11. Shah KV, Gibbs CJ, Banerjee G Virological investigation of the epidemic of haemorrhagic fever in calcutta: isolation of three strains of chikungunya virus. Indian J Med Res 1964, 52:676-683.
12. Laras K, Sukri NC, Larasati RP, Bangs MJ, Kosim R, Djauzi, et al. Tracking the re-emergence of epidemic chikungunya virus in Indonesia. Trans R Soc Trop Med Hyg 2005, 99(2):128-141.
13. Paquet C, Quatresous I, Solet JL, Sissoko D, Renault P, Pierre V, et al. Chikungunya outbreak in Reunion: epidemiology and surveillance, 2005 to early January 2006. Euro Surveill 2006, 11(2):E060202.3.
14. Cherian SS, Walimbe AM, Jadhav SM, Gandhe SS, Hundekar SL, Mishra AC, et al. Evolutionary rates and timescale comparison of chikungunya viruses inferred from the whole genome/E1 gene with special reference to the 2005-07 outbreak in the Indian subcontinent. Infect Genet Evol 2009, 9(1):16-23.
15. Theamboonlers A, Rianthavorn P, Praianantathavorn K, Wuttirattanakowit N, Poovorawan Y Clinical and molecular characterization of chikungunya virus in South Thailand. Jpn J Infect Dis 2009, 62(4):303-305.
16. Ng LC, Tan LK, Tan CH, Tan SS, Hapuarachchi HC, Pok KY, et al. Entomologic and virologic investigation of chikungunya, Singapore. Emerg Infect Dis 2009, 15(8):1243-1249.
17. Zheng K, Li J, Zhang Q, Liang M, Li C, Lin M, et al. Genetic analysis of chikungunya viruses imported to mainland China in 2008. Virol J 2010, 7:8.
18. Edgar RC Muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797.
19. Posada D, Crandall KA Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
20. Drummond AJ, Rambaut A BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 2007, 7:214.
21. Drummond AJ, Rambaut A, Shapiro B, Pybus OG Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 2005, 22:1185-1192.
22. Yergolkar PN, Tandale BV, Arankalle VA, Sathe PS, Sudeep AB, Gandhe SS, et al. Chikungunya outbreaks caused by African genotype, India. Emerg Infect Dis 2006, 12(10):1580-1583.
23. Ravikumar H, Ramachandraswamy N, Puttaraju HP Molecular strain typing of Wolbachia infection from Indian mosquitoes using wsp gene. Asian Pac J Trop Dis 2011, 1(2):106-109.
24. Okoror LE, Eniolorunda TA, Okoror OI Molecular evolutionary studies of Lassa virus nucleoprotein. Asian Pac J Trop Dis 2011, 1(1):28-34.
25. Ramachandran R, Lakshmi R, Kumar RD, Devika K, Rahman F, Wares DF Fast track method for the identification of multi-drug resistant tuberculosis on direct clinical specimen using combined drug media. Asian Pac J Trop Dis 2011, 1(1):47-49.
26. Vazeille M, Moutailler S, Coudrier D, Rousseaux C, Khun H, Huerre M, et al. Two chikungunya isolates from the outbreak of La Reunion (Indian Ocean) exhibit different patterns of infection in the mosquito, Aedes albopictus. PLoS One 2007, 2(11):e1168.
27. Sreekumar E, Issac A, Nair S, Hariharan R, Janki MB, Arathy DS, et al. Genetic characterization of 2006-2008 isolates of chikungunya virus from Kerala, South India, by whole genome sequence analysis. Virus Genes 2010, 40(1):14-27.