Isolation of new 40 microsatellite markers in mandarin fish (Siniperca chuatsi)

International Journal of Molecular Sciences

Volumn 12, Issue 7, 2011, Pages 4180-4189

  Liu, Xiaolian ^a   Luo, Wei ^a   Zeng, Cong ^a   Wang, Weimin ^a   Gao, Zexia ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

EST SSRs; Genomic SSRs; Microsatellite; Siniperca chuatsi

Indexed keywords

ANALYTIC METHOD; ARTICLE; DATA MINING; DINUCLEOTIDE REPEAT; EXPRESSED SEQUENCE TAG; FAST ISOLATION BY AFLP OF SEQUENCES CONTAINING REPEAT METHOD; FISH; GENE AMPLIFICATION; GENE ISOLATION; GENE NUMBER; GENE SEQUENCE; GENETIC POLYMORPHISM; HETEROZYGOSITY; MICROSATELLITE MARKER; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; SIMPLE SEQUENCE REPEAT; SINIPERCA CHUATSI; TETRANUCLEOTIDE REPEAT; TRINUCLEOTIDE REPEAT; ALLELE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ANIMAL; GENETIC MARKER; GENETICS; HETEROZYGOTE;

SINIPERCA CHUATSI; SINIPERCA SCHERZERI; TETRA;

GENETIC MARKER; MICROSATELLITE DNA;

ALLELES; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; ANIMALS; EXPRESSED SEQUENCE TAGS; FISHES; GENETIC MARKERS; HETEROZYGOTE; MICROSATELLITE REPEATS;

EID: 79960813510     PISSN: None     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms12074180     Document Type: Article

References (22)

1. Liang, X.F. Study on Mandarin fish and its culture home and abroad. Fish. Sci. Tech. Inf. 1996, 23, 13-17.
2. Liu, J.; Cui, Y.; Liu, J. Food consumption and growth of two piscivorous fishes, the mandarin fish and the Chinese snakehead. J. Fish Biol. 1998, 53, 1071-1083.
3. Hulak, M.; Kaspar, V.; Kohlmann, K.; Coward, K.; Tešitel, J.; Rodina, M.; Gela, D.; Kocour, M.; Linhart, O. Microsatellite-based genetic diversity and differentiation of foreign common carp (Cyprinus carpio) strains farmed in the Czech Republic. Aquaculture 2010, 298, 194-201.
4. Wang, C.M.; Bai, Z.Y.; He, X.P.; Lin, G.; Xia, J.H.; Lo, L.C.; Feng, F.; Zhu, Z.Y.; Yue, G.H. A high-resolution linkage map for comparative genome analysis and QTL fine mapping in Asian seabass, Lates calcarifer. BMC Genomics 2011, 12, 174.
5. Brown, B.; Wang, H.P.; Li, L.; Givens, C.; Wallat, G. Yellow perch strain evaluation I: Genetic variance of six broodstock populations. Aquaculture 2007, 271, 142-151.
6. Zhang, B.; Li, Z.J.; Tong, J.G.; Liao, X.L. Isolation and characterization of 18 polymorphic microsatellite markers in Chinese mandarin fish Siniperca chuatsi (Basilewsky). Mol. Ecol. Notes 2006, 6, 1216-1218.
7. Kuang, G.Q.; Lu, S.Q.; Zheng, S.M.; Wu, Q. Isolation and evaluation of 18 microsatellite loci in Siniperca chuatsi (Basilewsky). Mol. Ecol. Resour. 2009, 9, 1473-1475.
8. Van, Q.C.; Hutchinson, W.F.; Wills, D.P.M.; Shipley, P. MICRO-CHECKER: Software for identifying and correcting genotype errors in microsatellite data. Mol. Ecol. Notes 2004, 4, 535-538.
9. Zhang, C.G.; Zhao, Y.H. The resource status of Siniperca chuatsi in China and methods for its recover. Bull. Biol. 1999, 34, 9-11 (in Chinese).
10. Zhan, A.B.; Wang, Y.; Brown, B.; Wang, H.P. Isolation and characterization of novel microsatellite markers for yellow perch (Perca flavescens). Int. J. Mol. Sci. 2009, 10, 18-27.
11. Li, Q.; Shu, J.; Zhao, C.; Liu, S.K.; Kong, L.F.; Zheng, X.D. Characterization of genic microsatellite markers derived from expressed sequence tags in Pacific abalone (Haliotis discus hannai). Chin. J. Oceanol. Limnol. 2010, 18, 46-54.
12. Temnykh, S.; Park, W.D.; Ayres, N.; Cartinhour, S.; Hauck, N.; Lipovich, L.; Cho, Y.G.; Ishii, T.; McCouch, S. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor. Appl. Genet. 2000, 100, 697-712.
13. Yi, G.; Lee, J.M.; Lee, S.; Choi, D.; Kim, B.D. Exploitation of pepper EST-SSR and an SSR-based linkage map. Theor. Appl. Genet. 2006, 114, 113-130.
14. Ye, H.; Wang, X.Q.; Gao, T.X.; Wang, Z.Y. EST-derived microsatellites in Pseudosciaena crocea and their applicability to related species. Acta Oceanol. Sin. 2010, 29, 83-91.
15. Zhan, A.B.; Bao, Z.M.; Wang, X.L.; Hu, J.J. Microsatellite markers derived from bay scallop Argopecten irradians expressed sequence tags. Fish. Sci. 2005, 71, 1341-1346.
16. Wang, D.; Liao, X.L.; Cheng, L.; Yu, X.M.; Tong, J.G. Development of novel EST-SSR markers in common carp by data mining from public EST sequences. Aquaculture 2007, 271, 558-574.
17. Rozen, S.; Skaletsky, H. Primer 3 on WWW for General Users and for Biologist Programmers. In Bioinformatics Methods and Protocols; Krawetz, S., Misener, S., Eds.; Humana Press: Totowa, NJ, USA, 2000; pp. 365-386.
18. Taggart, J.B.; Hynes, R.A.; Prodoh, P.A.; Ferguson, A. A simplified protocol for routine total DNA isolation from salmonid fishes. J. Fish Biol. 1992, 40, 963-965.
19. Zane, L.; Bargelloni, L.; Patarnello, T. Strategies for microsatellite isolation: A review. Mol. Ecol. 2002, 11, 1-16.
20. Yeh, F.C.; Boyle, T.J.B. Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belg. J. Bot. 1997, 129, 157.
21. Raymond, M.; Rousset, F. GENEPOP (version 1.2): Population genetic software for exact tests and ecumenicism. J. Hered. 1995, 86, 248-249.
22. Rice, W.R. Analyzing tables of statistical tests. Evolution 1989, 43, 223-225.