Reprogrammed transcriptome in Rhesus-Bovine interspecies somatic cell nuclear transfer embryos

PLoS ONE

Volumn 6, Issue 7, 2011, Pages

  Wang, Kai ^a   Otu, Hasan H ^b,c   Chen, Ying ^a   Lee, Young ^d   Latham, Keith ^d   Cibelli, Jose B ^a,e  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c ISTANBUL BILGI UNIVERSITY   (Turkey)

^d TEMPLE UNIVERSITY   (United States)

^e Programa Andaluz de Terapia Celular   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

RNA; TRANSCRIPTOME;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CELL NUCLEUS TRANSPLANTATION; CONTROLLED STUDY; COW; EMBRYO; EMBRYO DEVELOPMENT; FERTILIZATION IN VITRO; FIBROBLAST; GENE ACTIVATION; GENE EXPRESSION; GENE SILENCING; GENOME ANALYSIS; INTERSPECIES SOMATIC CELL NUCLEAR TRANSFER; NONHUMAN; NUCLEAR REPROGRAMMING; OOCYTE; RHESUS MONKEY; RNA DEGRADATION; ANIMAL; ANIMAL EMBRYO; CATTLE; CYTOLOGY; DNA MICROARRAY; FEMALE; GENETICS; GENOMICS; MACACA MULATTA; METABOLISM; PLURIPOTENT STEM CELL; REPRODUCIBILITY;

BOVINAE; MAMMALIA;

ANIMALS; CATTLE; EMBRYO, MAMMALIAN; FEMALE; FERTILIZATION IN VITRO; GENOMICS; MACACA MULATTA; NUCLEAR REPROGRAMMING; NUCLEAR TRANSFER TECHNIQUES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLURIPOTENT STEM CELLS; REPRODUCIBILITY OF RESULTS; TRANSCRIPTOME;

EID: 79960742595     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0022197     Document Type: Article

References (33)

1. Memili E, First NL, (1998) Developmental changes in RNA polymerase II in bovine oocytes, early embryos, and effect of alpha-amanitin on embryo development. Mol Reprod Dev 51: 381-389.
2. Schultz RM, (1993) Regulation of zygotic gene activation in the mouse. Bioessays 15: 531-538.
3. Beyhan Z, Iager AE, Cibelli JB, (2007) Interspecies nuclear transfer: implications for embryonic stem cell biology. Cell Stem Cell 1: 502-512.
4. Tecirlioglu RT, Guo J, Trounson AO, (2006) Interspecies somatic cell nuclear transfer and preliminary data for horse-cow/mouse iSCNT. Stem Cell Rev 2: 277-287.
5. Dominko T, Mitalipova M, Haley B, Beyhan Z, Memili E, et al. (1999) Bovine oocyte cytoplasm supports development of embryos produced by nuclear transfer of somatic cell nuclei from various mammalian species. Biol Reprod 60: 1496-1502.
6. Kocabas AM, Crosby J, Ross PJ, Otu HH, Beyhan Z, et al. (2006) The transcriptome of human oocytes. Proc Natl Acad Sci U S A 103: 14027-14032.
7. Misirlioglu M, Page GP, Sagirkaya H, Kaya A, Parrish JJ, et al. (2006) Dynamics of global transcriptome in bovine matured oocytes and preimplantation embryos. Proc Natl Acad Sci U S A 103: 18905-18910.
8. VandeVoort CA, Mtango NR, Lee YS, Smith GW, Latham KE, (2009) Differential effects of follistatin on nonhuman primate oocyte maturation and pre-implantation embryo development in vitro. Biol Reprod 81: 1139-1146.
9. Alberio R, Campbell KH, Johnson AD, (2006) Reprogramming somatic cells into stem cells. Reproduction 132: 709-720.
10. Byrne JA, Pedersen DA, Clepper LL, Nelson M, Sanger WG, et al. (2007) Producing primate embryonic stem cells by somatic cell nuclear transfer. Nature 450: 497-502.
11. Cibelli J, (2007) Development. Is therapeutic cloning dead? Science 318: 1879-1880.
12. Kikyo N, Wolffe AP, (2000) Reprogramming nuclei: insights from cloning, nuclear transfer and heterokaryons. J Cell Sci 113 (Pt 1): 11-20.
13. Bultman SJ, Gebuhr TC, Pan H, Svoboda P, Schultz RM, et al. (2006) Maternal BRG1 regulates zygotic genome activation in the mouse. Genes Dev 20: 1744-1754.
14. Giraldez AJ, Mishima Y, Rihel J, Grocock RJ, Van Dongen S, et al. (2006) Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 312: 75-79.
15. Alizadeh Z, Kageyama S, Aoki F, (2005) Degradation of maternal mRNA in mouse embryos: selective degradation of specific mRNAs after fertilization. Mol Reprod Dev 72: 281-290.
16. Ferg M, Sanges R, Gehrig J, Kiss J, Bauer M, et al. (2007) The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish. Embo J 26: 3945-3956.
17. Kues WA, Sudheer S, Herrmann D, Carnwath JW, Havlicek V, et al. (2008) Genome-wide expression profiling reveals distinct clusters of transcriptional regulation during bovine preimplantation development in vivo. Proc Natl Acad Sci U S A 105: 19768-19773.
18. Chen Y, He ZX, Liu A, Wang K, Mao WW, et al. (2003) Embryonic stem cells generated by nuclear transfer of human somatic nuclei into rabbit oocytes. Cell Res 13: 251-263.
19. Wang K, Beyhan Z, Rodriguez RM, Ross PJ, Lager AE, et al. (2009) Bovine Ooplasm Partially Remodels Primate Somatic Nuclei following Somatic Cell Nuclear Transfer. Cloning Stem Cells.
20. Zeng F, Schultz RM, (2005) RNA transcript profiling during zygotic gene activation in the preimplantation mouse embryo. Dev Biol 283: 40-57.
21. Chung Y, Bishop CE, Treff NR, Walker SJ, Sandler VM, et al. (2009) Reprogramming of human somatic cells using human and animal oocytes. Cloning Stem Cells 11: 213-223.
22. Vassena R, Han Z, Gao S, Baldwin DA, Schultz RM, et al. (2007) Tough beginnings: alterations in the transcriptome of cloned embryos during the first two cell cycles. Dev Biol 304: 75-89.
23. Paynton BV, Rempel R, Bachvarova R, (1988) Changes in state of adenylation and time course of degradation of maternal mRNAs during oocyte maturation and early embryonic development in the mouse. Dev Biol 129: 304-314.
24. Sagata N, Watanabe N, Vande Woude GF, Ikawa Y, (1989) The c-mos proto-oncogene product is a cytostatic factor responsible for meiotic arrest in vertebrate eggs. Nature 342: 512-518.
25. Beyhan Z, Ross PJ, Iager AE, Kocabas AM, Cunniff K, et al. (2007) Transcriptional reprogramming of somatic cell nuclei during preimplantation development of cloned bovine embryos. Dev Biol 305: 637-649.
26. Li C, Wong WH, (2001) Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci U S A 98: 31-36.
27. Barash Y, Dehan E, Krupsky M, Franklin W, Geraci M, et al. (2004) Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays. Bioinformatics 20: 839-846.
28. Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, et al. (2005) Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data. BMC Bioinformatics 6: 26.
29. Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, et al. (2003) Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 31: e15.
30. Yuen T, Wurmbach E, Pfeffer RL, Ebersole BJ, Sealfon SC, (2002) Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nucleic Acids Res 30: e48.
31. Ramalho-Santos M, Yoon S, Matsuzaki Y, Mulligan RC, Melton DA, (2002) "Stemness": transcriptional profiling of embryonic and adult stem cells. Science 298: 597-600.
32. Soumare S, Losfeld J, Blondeau R, (1973) [Numerical taxonomy in the study of bacterial soil microflora in the north of France]. Ann Microbiol (Paris) 124: 81-94.
33. Byrne JA, Mitalipov SM, Clepper L, Wolf DP, (2006) Transcriptional profiling of rhesus monkey embryonic stem cells. Biol Reprod 75: 908-915.