Specific molecular detection of Phytophthora sojae using conventional and real-time PCR

Fungal Biology

Volumn 115, Issue 8, 2011, Pages 733-740

  Bienapfl, John C ^a   Malvick, Dean K ^a   Percich, James A ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Glycine; Molecular diagnostics; Phytophthora rot; Root disease; Soybean

Indexed keywords

PRIMER DNA;

CROP PRODUCTION; DETECTION METHOD; FUNGUS; GENOMICS; HOST-PATHOGEN INTERACTION; INFECTIVITY; MITOCHONDRIAL DNA; MOLECULAR ANALYSIS; POLYMERASE CHAIN REACTION; REAL TIME; ROOT ROT; SOYBEAN;

ARTICLE; CLASSIFICATION; EVALUATION; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; PHYTOPHTHORA; PLANT DISEASE; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SOYBEAN; SPECIES DIFFERENCE;

DNA PRIMERS; MOLECULAR SEQUENCE DATA; PHYTOPHTHORA; PLANT DISEASES; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SOYBEANS; SPECIES SPECIFICITY;

GLYCINE MAX; OOMYCETES; PHYTOPHTHORA; PHYTOPHTHORA SOJAE;

EID: 79960717461     PISSN: 18786146     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funbio.2011.05.007     Document Type: Article

References (21)

1. Bienapfl J.C., Percich J.A., Malvick D.K. Evaluation of PCR-based methods for species-specific detection of Phytophthora sojae. Phytopathology 2007, 98(Suppl). S201.
2. Erwin D.C., Ribeiro O.K. Phytophthora Diseases Worldwide 1996, APS Press, St. Paul, MN, USA.
3. Hamm P.B., Hansen E.M. Host specificity of Phytophthora megasperma from Douglas fir, soybean, and alfalfa. Phytopathology 1981, 71:65-68.
4. Hansen E.M., Wilcox W.F., Reeser P.W., Sutton W. Phytophthora rosacearum and P. sansomeana, new species segregated from the Phytophthora megasperma " complex" Mycologia 2009, 101:129-135.
5. Compendium of Soybean Diseases 1999, APS Press, St. Paul, MN, USA. 4th edn. G.L. Hartman, J.B. Sinclair, J.C. Rupe (Eds.).
6. Malvick D.K., Grunden E. Traits of soybean-infecting Phytophthora populations from Illinois agricultural fields. Plant Disease 2004, 88:1139-1145.
7. Malvick D.K., Grunden E. Isolation of fungal DNA from plant tissues and removal of DNA amplification inhibitors. Molecular Ecology Notes 2005, 5:958-960.
8. O'Brien P.A., Williams N., Hardy G.E.S.J. Detecting Phytophthora. Critical Reviews in Microbiology 2009, 35:169-181.
9. Reeser P., Hansen E. A root rot of soybean (Glycine max) caused by Phytophthora sansomeana sp. nov. Phytopathology 2009, 99(Suppl). S107.
10. Reeser P.W., Scott D.H., Ruhl G.E. Recovery of race non-classifiable Phytophthora megasperma f. sp. glycinea from soybean roots in Indiana in 1990. Phytopathology 1991, 81:1201.
11. Rose P., Reeleder R.D. Real-time polymerase chain reaction (PCR) detection of Phytophthora sojae in soil. Canadian Journal of Plant Pathology 2006, 28:340.
12. Schmitthenner A.F. Phytophthora rot of soybean. Plant Health Progress 2000, http://www.plantmanagementnetwork.org/pub/php/management/phytophthora/.
13. Schmitthenner A.F., Bhat R.G. Useful Methods for Studying Phytophthora in the Laboratory 1994, Ohio State University: Ohio Agricultural Research and Development Center Special Circular 143, Wooster, OH, USA.
14. Song J., Jeon N., Li S., Kim H., Hartman G.L. Development of PCR assay using species-specific primers for Phytophthora sojae based on the DNA sequence of its transposable element. Phytopathology 2007, 97(Suppl). S110.
15. Tang Q.H., Gao F., Li G.Y., Wang H., Zheng X.B., Wang Y.C. First report of root rot caused by Phytophthora sansomeana on soybean in China. Plant Disease 2010, 94:378.
16. Vincelli P., Tisserat N. Nucleic acid-based pathogen detection in applied plant pathology. Plant Disease 2008, 92:660-669.
17. Wang Y., Zhang W., Wang Y., Zheng X. Rapid and sensitive detection of Phytophthora sojae in soil and infected soybeans by species-specific polymerase chain reaction assays. Phytopathology 2006, 96:1315-1321.
18. Wrather J.A., Anderson T.R., Arsyad D.M., Tan Y., Ploper L.D., Porta-Puglia A., Ram H.H., Yorinori J.T. Soybean disease loss estimates for the top ten soybean-producing countries in 1998. Canadian Journal of Plant Pathology 2001, 23:115-121.
19. Wrather J.A., Koenning S.R. Estimates of disease effects on soybean yields in the United States 2003-2005. Journal of Nematology 2006, 38:173-180.
20. Xu J.J., Lin Y., Dong L.M., Wang X.M., Wu X.F., Zhu Z.D. Rapid detection of Phytophthora sojae using SSR marker and nested PCR. Scientia Agricultura Sinica 2009, 42:1624-1630.
21. Zelaya-Molina L.X., Ellis M.L., Berry S.A., Dorrance A.E. First report of Phytophthora sansomeana causing wilting and stunting on corn in Ohio. Plant Disease 2010, 94:125.