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Volumn 9, Issue 3, 2011, Pages 97-103

Hox gene clusters of early vertebrates: Do they serve as reliable markers for genome evolution?

Author keywords

Chondrichthyes; Cyclostomata; Hidden paralogy; Hox cluster; Whole genome duplication

Indexed keywords

CYCLOSTOME; GENE DUPLICATION; GENE EXPRESSION; GENE LOSS; GENETIC ASSOCIATION; GENETIC CONSERVATION; GENOME; HOX GENE; INVERTEBRATE; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PLOIDY; RELIABILITY; REVIEW; TELEOST; VERTEBRATE;

EID: 79960714887     PISSN: 16720229     EISSN: 22103244     Source Type: Journal    
DOI: 10.1016/S1672-0229(11)60012-0     Document Type: Review
Times cited : (11)

References (49)
  • 1
    • 34547819351 scopus 로고    scopus 로고
    • The rise and fall of Hox gene clusters
    • Duboule D. The rise and fall of Hox gene clusters. Development 2007, 134:2549-2560.
    • (2007) Development , vol.134 , pp. 2549-2560
    • Duboule, D.1
  • 2
    • 0026361420 scopus 로고
    • The branchial Hox code and its implications for gene regulation, patterning of the nervous system and head evolution
    • Hunt P., et al. The branchial Hox code and its implications for gene regulation, patterning of the nervous system and head evolution. Development 1991, 2:63-77.
    • (1991) Development , vol.2 , pp. 63-77
    • Hunt, P.1
  • 3
    • 0024788839 scopus 로고
    • Coordinate expression of the murine Hox-5 complex homoeobox-containing genes during limb pattern formation
    • Dolle P., et al. Coordinate expression of the murine Hox-5 complex homoeobox-containing genes during limb pattern formation. Nature 1989, 342:767-772.
    • (1989) Nature , vol.342 , pp. 767-772
    • Dolle, P.1
  • 4
    • 0034161299 scopus 로고    scopus 로고
    • Endoderm development: from patterning to organogenesis
    • Grapin-Botton A., Melton D.A. Endoderm development: from patterning to organogenesis. Trends Genet. 2000, 16:124-130.
    • (2000) Trends Genet. , vol.16 , pp. 124-130
    • Grapin-Botton, A.1    Melton, D.A.2
  • 5
    • 0028605603 scopus 로고
    • Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony
    • Duboule D. Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony. Dev. Suppl. 1994, 1994:135-142.
    • (1994) Dev. Suppl. , vol.1994 , pp. 135-142
    • Duboule, D.1
  • 6
    • 69449108407 scopus 로고    scopus 로고
    • The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication
    • Kuraku S., Meyer A. The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication. Int. J. Dev. Biol. 2009, 53:765-773.
    • (2009) Int. J. Dev. Biol. , vol.53 , pp. 765-773
    • Kuraku, S.1    Meyer, A.2
  • 7
    • 12944301125 scopus 로고    scopus 로고
    • Hox cluster genomics in the horn shark, Heterodontus francisci
    • Kim C.B., et al. Hox cluster genomics in the horn shark, Heterodontus francisci. Proc. Natl. Acad. Sci. USA 2000, 97:1655-1660.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1655-1660
    • Kim, C.B.1
  • 8
    • 0842334025 scopus 로고    scopus 로고
    • The shark HoxN cluster is homologous to the human HoxD cluster
    • Prohaska S.J., et al. The shark HoxN cluster is homologous to the human HoxD cluster. J. Mol. Evol. 2004, 58:212-217.
    • (2004) J. Mol. Evol. , vol.58 , pp. 212-217
    • Prohaska, S.J.1
  • 9
    • 70349522026 scopus 로고    scopus 로고
    • Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes
    • Ravi V., et al. Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes. Proc. Natl. Acad. Sci. USA 2009, 106:16327-16332.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 16327-16332
    • Ravi, V.1
  • 10
    • 34247342594 scopus 로고    scopus 로고
    • Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome
    • Venkatesh B., et al. Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLoS Biol. 2007, 5:e101.
    • (2007) PLoS Biol. , vol.5
    • Venkatesh, B.1
  • 11
    • 0032518271 scopus 로고    scopus 로고
    • Hox gene variation and evolution
    • Meyer A. Hox gene variation and evolution. Nature 1998, 391:227-228. 225.
    • (1998) Nature , vol.391
    • Meyer, A.1
  • 12
    • 59249092524 scopus 로고    scopus 로고
    • Multiple chromosomal rearrangements structured the ancestral vertebrate Hoxbearing protochromosomes
    • Lynch V.J., Wagner G.P. Multiple chromosomal rearrangements structured the ancestral vertebrate Hoxbearing protochromosomes. PLoS Genet. 2009, 5:e1000349.
    • (2009) PLoS Genet. , vol.5
    • Lynch, V.J.1    Wagner, G.P.2
  • 13
    • 78649361282 scopus 로고    scopus 로고
    • Evolution of Hox gene clusters in gnathostomes: insights from a survey of a shark (Scyliorhinus canicula) transcriptome
    • Oulion S., et al. Evolution of Hox gene clusters in gnathostomes: insights from a survey of a shark (Scyliorhinus canicula) transcriptome. Mol. Biol. Evol. 2010, 27:2829-2838.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2829-2838
    • Oulion, S.1
  • 14
    • 77957676858 scopus 로고    scopus 로고
    • The dogfish Scyliorhinus canicula: a reference in jawed vertebrates
    • Coolen M., et al. The dogfish Scyliorhinus canicula: a reference in jawed vertebrates. Cold Spring Harb. Protoc. 2008, 13:431-446.
    • (2008) Cold Spring Harb. Protoc. , vol.13 , pp. 431-446
    • Coolen, M.1
  • 15
    • 70349326086 scopus 로고    scopus 로고
    • Comparative genomics of chondrichthyan Hoxa clusters
    • Mulley J.F., et al. Comparative genomics of chondrichthyan Hoxa clusters. BMC Evol. Biol. 2009, 9:218.
    • (2009) BMC Evol. Biol. , vol.9 , pp. 218
    • Mulley, J.F.1
  • 16
    • 77958144056 scopus 로고    scopus 로고
    • Evolutionary origin and phylogeny of the modern holocephalans (Chondrichthyes: Chimaeriformes): a mitogenomic perspective
    • Inoue J.G., et al. Evolutionary origin and phylogeny of the modern holocephalans (Chondrichthyes: Chimaeriformes): a mitogenomic perspective. Mol. Biol. Evol. 2010, 27:2576-2586.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2576-2586
    • Inoue, J.G.1
  • 17
    • 77958122162 scopus 로고    scopus 로고
    • Cartilaginous fishes (Chondrichthyes)
    • Oxford University Press, New York, USA, S. Kumar, S.B. Hedges (Eds.)
    • Heinicke M., et al. Cartilaginous fishes (Chondrichthyes). The Timetree of Life 2009, 320-327. Oxford University Press, New York, USA. S. Kumar, S.B. Hedges (Eds.).
    • (2009) The Timetree of Life , pp. 320-327
    • Heinicke, M.1
  • 18
    • 34548856245 scopus 로고    scopus 로고
    • Insights from sharks: evolutionary and developmental models of fin development
    • Cole N.J., Currie P.D. Insights from sharks: evolutionary and developmental models of fin development. Dev. Dyn. 2007, 236:2421-2431.
    • (2007) Dev. Dyn. , vol.236 , pp. 2421-2431
    • Cole, N.J.1    Currie, P.D.2
  • 19
    • 38949158940 scopus 로고    scopus 로고
    • Biphasic Hoxd gene expression in shark paired fins reveals an ancient origin of the distal limb domain
    • Freitas R., et al. Biphasic Hoxd gene expression in shark paired fins reveals an ancient origin of the distal limb domain. PLoS One 2007, 2:e754.
    • (2007) PLoS One , vol.2
    • Freitas, R.1
  • 20
    • 33748305741 scopus 로고    scopus 로고
    • Evidence that mechanisms of fin development evolved in the midline of early vertebrates
    • Freitas R., et al. Evidence that mechanisms of fin development evolved in the midline of early vertebrates. Nature 2006, 442:1033-1037.
    • (2006) Nature , vol.442 , pp. 1033-1037
    • Freitas, R.1
  • 21
    • 65249125740 scopus 로고    scopus 로고
    • Heterochronic shift in Hox-mediated activation of sonic hedgehog leads to morphological changes during fin development
    • Sakamoto K., et al. Heterochronic shift in Hox-mediated activation of sonic hedgehog leads to morphological changes during fin development. PLoS One 2009, 4:e5121.
    • (2009) PLoS One , vol.4
    • Sakamoto, K.1
  • 22
    • 34249337760 scopus 로고    scopus 로고
    • An autopodial-like pattern of Hox expression in the fins of a basal actinopterygian fish
    • Davis M.C., et al. An autopodial-like pattern of Hox expression in the fins of a basal actinopterygian fish. Nature 2007, 447:473-476.
    • (2007) Nature , vol.447 , pp. 473-476
    • Davis, M.C.1
  • 23
    • 0029027342 scopus 로고
    • Hox gene expression in teleost fins and the origin of vertebrate digits
    • Sordino P., et al. Hox gene expression in teleost fins and the origin of vertebrate digits. Nature 1995, 375:678-681.
    • (1995) Nature , vol.375 , pp. 678-681
    • Sordino, P.1
  • 24
    • 44349193286 scopus 로고    scopus 로고
    • Noncanonical role of Hox14 revealed by its expression patterns in lamprey and shark
    • Kuraku S., et al. Noncanonical role of Hox14 revealed by its expression patterns in lamprey and shark. Proc. Natl. Acad. Sci. USA 2008, 105:6679-6683.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 6679-6683
    • Kuraku, S.1
  • 25
    • 34547812509 scopus 로고    scopus 로고
    • Comparison of acid mucin goblet cell distribution and Hox13 expression patterns in the developing vertebrate digestive tract
    • Theodosiou N.A., et al. Comparison of acid mucin goblet cell distribution and Hox13 expression patterns in the developing vertebrate digestive tract. J. Exp. Zool. B Mol. Dev. Evol. 2007, 308:442-453.
    • (2007) J. Exp. Zool. B Mol. Dev. Evol. , vol.308 , pp. 442-453
    • Theodosiou, N.A.1
  • 27
    • 79955513063 scopus 로고    scopus 로고
    • Evolution of repeated structures along the body axis of jawed vertebrates, insights from the Scyliorhinus canicula Hox code
    • Oulion S., et al. Evolution of repeated structures along the body axis of jawed vertebrates, insights from the Scyliorhinus canicula Hox code. Evol. Dev. 2011, 13:247-259.
    • (2011) Evol. Dev. , vol.13 , pp. 247-259
    • Oulion, S.1
  • 28
    • 74349099191 scopus 로고    scopus 로고
    • Jawless fishes (Cyclostomata)
    • Oxford University Press, New York, USA, S. Kumar, S.B. Hedges (Eds.)
    • Kuraku S., et al. Jawless fishes (Cyclostomata). The Timetree of life 2009, 317-320. Oxford University Press, New York, USA. S. Kumar, S.B. Hedges (Eds.).
    • (2009) The Timetree of life , pp. 317-320
    • Kuraku, S.1
  • 29
    • 34147130163 scopus 로고    scopus 로고
    • Time scale for cyclostome evolution inferred with a phylogenetic diagnosis of hagfish and lamprey cDNA sequences
    • Kuraku S., Kuratani S. Time scale for cyclostome evolution inferred with a phylogenetic diagnosis of hagfish and lamprey cDNA sequences. Zool. Sci. 2006, 23:1053-1064.
    • (2006) Zool. Sci. , vol.23 , pp. 1053-1064
    • Kuraku, S.1    Kuratani, S.2
  • 30
    • 56849126764 scopus 로고    scopus 로고
    • Insights into cyclostome phylogenomics: pre-2R or post-2R
    • Kuraku S. Insights into cyclostome phylogenomics: pre-2R or post-2R. Zool. Sci. 2008, 25:960-968.
    • (2008) Zool. Sci. , vol.25 , pp. 960-968
    • Kuraku, S.1
  • 31
    • 34648816680 scopus 로고    scopus 로고
    • The 2R hypothesis: an update
    • Kasahara M. The 2R hypothesis: an update. Curr. Opin. Immunol. 2007, 19:547-552.
    • (2007) Curr. Opin. Immunol. , vol.19 , pp. 547-552
    • Kasahara, M.1
  • 32
    • 0027253981 scopus 로고
    • Expansion of the Hox gene family and the evolution of chordates
    • Pendleton J.W., et al. Expansion of the Hox gene family and the evolution of chordates. Proc. Natl. Acad. Sci. USA 1993, 90:6300-6304.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 6300-6304
    • Pendleton, J.W.1
  • 33
    • 0031780257 scopus 로고    scopus 로고
    • Estimation of Hox gene cluster number in lampreys
    • Sharman A.C., Holland P.W. Estimation of Hox gene cluster number in lampreys. Int. J. Dev. Biol. 1998, 42:617-620.
    • (1998) Int. J. Dev. Biol. , vol.42 , pp. 617-620
    • Sharman, A.C.1    Holland, P.W.2
  • 34
    • 2442681817 scopus 로고    scopus 로고
    • Evolutionary biology: lamprey Hox genes and the evolution of jaws
    • following 262.
    • Takio Y., et al. Evolutionary biology: lamprey Hox genes and the evolution of jaws. Nature 2004, 429:1. following 262.
    • (2004) Nature , vol.429 , pp. 1
    • Takio, Y.1
  • 35
    • 34547746941 scopus 로고    scopus 로고
    • Hox gene expression patterns in Lethenteron japonicum embryos-insights into the evolution of the vertebrate Hox code
    • Takio Y., et al. Hox gene expression patterns in Lethenteron japonicum embryos-insights into the evolution of the vertebrate Hox code. Dev. Biol. 2007, 308:606-620.
    • (2007) Dev. Biol. , vol.308 , pp. 606-620
    • Takio, Y.1
  • 36
    • 57749184792 scopus 로고    scopus 로고
    • Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after?
    • Kuraku S., et al. Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after?. Mol. Biol. Evol. 2009, 26:47-59.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 47-59
    • Kuraku, S.1
  • 37
    • 0037092011 scopus 로고    scopus 로고
    • Hox cluster organization in the jawless vertebrate Petromyzon marinus
    • Force A., et al. Hox cluster organization in the jawless vertebrate Petromyzon marinus. J. Exp. Zool. 2002, 294:30-46.
    • (2002) J. Exp. Zool. , vol.294 , pp. 30-46
    • Force, A.1
  • 38
    • 0037091997 scopus 로고    scopus 로고
    • Genomic analysis of Hox clusters in the sea lamprey Petromyzon marinus
    • Irvine S.Q., et al. Genomic analysis of Hox clusters in the sea lamprey Petromyzon marinus. J. Exp. Zool. 2002, 294:47-62.
    • (2002) J. Exp. Zool. , vol.294 , pp. 47-62
    • Irvine, S.Q.1
  • 39
    • 0344179079 scopus 로고    scopus 로고
    • Independent Hox-cluster duplications in lampreys
    • Fried C., et al. Independent Hox-cluster duplications in lampreys. J. Exp. Zool. B Mol. Dev. Evol. 2003, 299:18-25.
    • (2003) J. Exp. Zool. B Mol. Dev. Evol. , vol.299 , pp. 18-25
    • Fried, C.1
  • 40
    • 1842838629 scopus 로고    scopus 로고
    • Evidence for independent Hox gene duplications in the hagfish lineage: a PCR-based gene inventory of Eptatretus stoutii
    • Stadler P.F., et al. Evidence for independent Hox gene duplications in the hagfish lineage: a PCR-based gene inventory of Eptatretus stoutii. Mol. Phylogenet. Evol. 2004, 32:686-694.
    • (2004) Mol. Phylogenet. Evol. , vol.32 , pp. 686-694
    • Stadler, P.F.1
  • 41
    • 37549012593 scopus 로고    scopus 로고
    • A degenerate ParaHox gene cluster in a degenerate vertebrate
    • Furlong R.F., et al. A degenerate ParaHox gene cluster in a degenerate vertebrate. Mol. Biol. Evol. 2007, 24:2681-2686.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 2681-2686
    • Furlong, R.F.1
  • 42
    • 34247279339 scopus 로고    scopus 로고
    • Hagfish embryology with reference to the evolution of the neural crest
    • Ota K.G., et al. Hagfish embryology with reference to the evolution of the neural crest. Nature 2007, 446:672-675.
    • (2007) Nature , vol.446 , pp. 672-675
    • Ota, K.G.1
  • 43
    • 85170278339 scopus 로고    scopus 로고
    • The sea lamprey Petromyzon marinus: a model for evolutionary and developmental biology. Cold Spring Harb. Protoc. 2009: pdb.emo113.
    • Nikitina, N., et al. 2009. The sea lamprey Petromyzon marinus: a model for evolutionary and developmental biology. Cold Spring Harb. Protoc. 2009: pdb.emo113.
    • (2009)
    • Nikitina, N.1
  • 44
    • 77954927657 scopus 로고    scopus 로고
    • Palaeophylogenomics of the vertebrate ancestor-impact of hidden paralogy in hagfish and lamprey gene phylogeny
    • Kuraku S. Palaeophylogenomics of the vertebrate ancestor-impact of hidden paralogy in hagfish and lamprey gene phylogeny. Integr. Comp. Biol. 2010, 50:124-129.
    • (2010) Integr. Comp. Biol. , vol.50 , pp. 124-129
    • Kuraku, S.1
  • 45
    • 74349086025 scopus 로고    scopus 로고
    • The origin of bmp16, a novel Bmp2/4 relative, retained in teleost fish genomes
    • Feiner N., et al. The origin of bmp16, a novel Bmp2/4 relative, retained in teleost fish genomes. BMC Evol. Biol. 2009, 9:277.
    • (2009) BMC Evol. Biol. , vol.9 , pp. 277
    • Feiner, N.1
  • 46
    • 19544383965 scopus 로고    scopus 로고
    • Organization of Hox genes in ascidians: present, past, and future
    • Ikuta T., Saiga H. Organization of Hox genes in ascidians: present, past, and future. Dev. Dyn. 2005, 233:382-389.
    • (2005) Dev. Dyn. , vol.233 , pp. 382-389
    • Ikuta, T.1    Saiga, H.2
  • 47
    • 4544320630 scopus 로고    scopus 로고
    • Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica
    • Seo H.C., et al. Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica. Nature 2004, 431:67-71.
    • (2004) Nature , vol.431 , pp. 67-71
    • Seo, H.C.1
  • 48
    • 45749086679 scopus 로고    scopus 로고
    • The amphioxus genome and the evolution of the chordate karyotype
    • Putnam N.H., et al. The amphioxus genome and the evolution of the chordate karyotype. Nature 2008, 453:1064-1071.
    • (2008) Nature , vol.453 , pp. 1064-1071
    • Putnam, N.H.1
  • 49
    • 0036725608 scopus 로고    scopus 로고
    • Analysis of lamprey and hagfish genes reveals a complex history of gene duplications during early vertebrate evolution
    • Escriva H., et al. Analysis of lamprey and hagfish genes reveals a complex history of gene duplications during early vertebrate evolution. Mol. Biol. Evol. 2002, 19:1440-1450.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1440-1450
    • Escriva, H.1


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