Soil, But Not Cultivar, Shapes the Structure of Arbuscular Mycorrhizal Fungal Assemblages Associated with Strawberry

Microbial Ecology

Volumn 62, Issue 1, 2011, Pages 25-35

  Santos González, Juan C ^a   Nallanchakravarthula, Srivathsa ^a   Alström, Sadhna ^a   Finlay, Roger D ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLASSIFICATION; FUNGUS; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; MYCORRHIZA; NUCLEOTIDE SEQUENCE; PHYLOGENY; SOIL; STRAWBERRY;

FRAGARIA; FUNGI; MOLECULAR SEQUENCE DATA; MYCORRHIZAE; PHYLOGENY; SOIL; SOIL MICROBIOLOGY;

ACAULOSPORA; ARBUSCULAR; FRAGARIA X ANANASSA; FUNGI;

EID: 79960572574     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-011-9834-7     Document Type: Article

References (68)

1. Alguacil MD, Diaz-Pereira E, Caravaca F, Fernandez DA, Roldan A (2009) Increased diversity of arbuscular mycorrhizal fungi in a long-term field experiment via application of organic amendments to a semiarid degraded soil. Appl Environ Microbiol 75: 4254-4263.
2. Altschul SF, Thomas LS, Alejandro AS, Jingui Z, Webb M, David JL (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
3. Anderson EL, Millner PD, Kunishi HM (1987) Maize root length density and mycorrhizal infection as influenced by tillage and soil-phosphorus. J Plant Nutr 10: 1349-1356.
4. Auge RM (2004) Arbuscular mycorrhizae and soil/plant water relations. Can J Soil Sci 84: 373-381.
5. Azcón R, Ocampo JA (1981) Factors affecting the vesicular-arbuscular infection and mycorrhizal dependency of 13 wheat cultivars. New Phytol 87: 677-685.
6. Bharadwaj DP, Lundquist PO, Alstrom S (2007) Impact of plant species grown as monocultures on sporulation and root colonization by native arbuscular mycorrhizal fungi in potato. Appl Soil Ecol 35: 213-225.
7. Borowicz VA (2001) Do arbuscular mycorrhizal fungi alter plant-pathogen relations? Ecology 82: 3057-3068.
8. Borowicz VA (2010) The impact of arbuscular mycorrhizal fungi on strawberry tolerance to root damage and drought stress. Pedobiologia 53: 265-270.
9. Cao Y, Williams DD, Larsen DP (2002) Comparison of ecological communities: the problem of sample representativeness. Ecol Monogr 72: 41-56.
10. Castellanos-Morales V, Villegas J, Wendelin S, Vierheilig H, Eder R, Cardenas-Navarro R (2010) Root colonisation by the arbuscular mycorrhizal fungus Glomus intraradices alters the quality of strawberry fruits (Fragaria × ananassa Duch.) at different nitrogen levels. J Sci Food Agric 90: 1774-1782.
11. Chavez MG, Ferreracerrato R (1990) Effect of vesicular arbuscular mycorrhizae on tissue culture-derived plantlets of strawberry. Hortscience 25: 903-905.
12. Colwell R (2005) EstimateS: statistical estimation of species richness and shared species from samples. User's Guide and application published at: http://purl. oclc. org/estimates.
13. Daniell TJ, Husband R, Fitter AH, Young JPW (2001) Molecular diversity of arbuscular mycorrhizal fungi colonising arable crops. FEMS Microbiol Ecol 36: 203-209.
14. Douds DD, Nagahashi G, Shenk JE, Demchak K (2008) Inoculation of strawberries with AM fungi produced on-farm increased yield. Biol Agric Hortic 26: 209-219.
15. Dunne MJ, Fitter AH (1989) The phosphorus budget of a field-grown strawberry (Fragaria x ananassa cv Hapil) crop-evidence for a mycorrhizal contribution. Ann Appl Biol 114: 185-193.
16. Edwards SG, Fitter AH, Young JPW (1997) Quantification of an arbuscular mycorrhizal fungus, Glomus mosseae, within plant roots by competitive polymerase chain reaction. Mycol Res 101: 1440-1444.
17. Fauth J, Bernardo J, Camara M, Resetarits W, van Buskirk J, McCollim S (1996) Simplifying the jargon of community ecology: a conceptual approach. American Naturalist 147: 282-286.
18. Galvan GA, Paradi I, Burger K, Baar J, Kuyper TW, Scholten OE, Kik C (2009) Molecular diversity of arbuscular mycorrhizal fungi in onion roots from organic and conventional farming systems in the Netherlands. Mycorrhiza 19: 317-328.
19. Good I (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40: 237-264.
20. Gosling P, Hodge A, Goodlass G, Bending GD (2006) Arbuscular mycorrhizal fungi and organic farming. Agric Ecosyst Environ 113: 17-35.
21. Hart MM, Reader RJ (2002) Taxonomic basis for variation in the colonization strategy of arbuscular mycorrhizal fungi. New Phytol 153: 335-344.
22. Hayman DS, Mosse B (1971) Plant growth responses to vesicular-arbuscular mycorrhiza. 1. Growth of Endogone-inoculated plants in phosphate-deficient soils. New Phytol 70: 19-27.
23. Helgason T, Daniell TJ, Husband R, Fitter AH, Young JPW (1998) Ploughing up the wood-wide web? Nature 394: 431.
24. Helgason T, Fitter AH, Young JPW (1999) Molecular diversity of arbuscular mycorrhizal fungi colonising Hyacinthoides non-scripta (bluebell) in a seminatural woodland. Mol Ecol 8: 659-666.
25. Hijri I, Sykorova Z, Oehl F, Ineichen K, Mäder P, Wiemken A, Redecker D (2006) Communities of arbuscular mycorrhizal fungi in arable soils are not necessarily low in diversity. Mol Ecol 15: 2277-2289.
26. Johnson NC (1993) Can fertilization of soil select less mutualistic mycorrhizae? Ecol Appl 3: 749-757.
27. Kanagawa T (2003) Bias and artifacts in multitemplate polymerase chain reactions (PCR). J Biosci Bioeng 96: 317-323.
28. Khanizadeh S, Hamel C, Kianmehr H, Buszard D, Smith DL (1995) Effect of 3 vesicular-arbuscular mycorrhizae species and phosphorus on reproductive and vegetative growth of 3 strawberry cultivars. J Plant Nutr 18: 1073-1079.
29. Kogel KH, Franken P, Huckelhoven R (2006) Endophyte or parasite-what decides? Curr Opin Plant Biol 9: 358-363.
30. Koide RT (2000) Functional complementarity in the arbuscular mycorrhizal symbiosis. New Phytol 147: 223-235.
31. König S, Wubet T, Dormann CF, Hempel S, Renker C, Buscot F (2010) TaqMan real-time PCR assays to assess Arbuscular mycorrhizal responses to field manipulation of grassland biodiversity: effects of soil characteristics, plant species richness, and functional traits. Appl Environ Microbiol 76: 3765-3775.
32. Koske R, Gemma J (1989) A modified procedure for staining roots to detect VA mycorrhizas. Mycological Research 92: 486-505.
33. Kruskal J, Wish M (1978) Multidimensional scaling. Sage Publications, Beverly Hills.
34. Lee J, Lee S, Young JPW (2008) Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi. FEMS Microbiol Ecol 65: 339-349.
35. Leyval C, Turnau K, Haselwandter K (1997) Effect of heavy metal pollution on mycorrhizal colonization and function: physiological, ecological and applied aspects. Mycorrhiza 7: 139-153.
36. Mader P, Edenhofer S, Boller T, Wiemken A, Niggli U (2000) Arbuscular mycorrhizae in a long-term field trial comparing low-input (organic, biological) and high-input (conventional) farming systems in a crop rotation. Biol Fertil Soils 31: 150-156.
37. Maherali H, Klironomos JN (2007) Influence of Phylogeny on fungal community assembly and ecosystem functioning. Science 316: 1746-1748.
38. Mathimaran N, Ruh R, Vullioud P, Frossard E, Jansa J (2005) Glomus intraradices dominates arbuscular mycorrhizal communities in a heavy textured agricultural soil. Mycorrhiza 16: 61-66.
39. McCune B, Mefford MJ (1999) PC-ORD. Multivariate analysis of ecological data. Version 4. 25. MjMSoftware Design: Gleneden Beach, Oregon, USA.
40. McGonigle TP, Miller MH, Evans DG, Fairchild GL, Swan JA (1990) A new method which gives an objective measure of colonization of roots by vesicular-arbuscular mycorrhizal fungi. New Phytol 115: 495-501.
41. Mielke JP (1984) Meteorological applications of permutation techniques based on distance functions. In: Krishnaiah P, Sen P (eds) Handbook of statistics. Elevier North-Holland, Amsterdam.
42. Mosse B (1953) Fructifications associated with mycorrhizal strawberry roots. Nature 171: 974.
43. Newsham KK, Fitter AH, Watkinson AR (1995) Arbuscular mycorrhiza protect an annual grass from root pathogenic fungi in the field. J Ecol 83: 991-1000.
44. Niemi M, Vestberg M (1992) Inoculation of commercially grown strawberry with VA mycorrhizal fungi. Plant Soil 144: 133-142.
45. Norman JR, Atkinson D, Hooker JE (1996) Arbuscular mycorrhizal fungal-induced alteration to root architecture in strawberry and induced resistance to the root pathogen Phytophthora fragariae. Plant Soil 185: 191-198.
46. Oehl F, Sieverding E, Ineichen K, Mader P, Boller T, Wiemken A (2003) Impact of land use intensity on the species diversity of arbuscular mycorrhizal fungi in agroecosystems of Central Europe. Appl Environ Microbiol 69: 2816-2824.
47. Oehl F, Sieverding E, Mader P, Dubois D, Ineichen K, Boller T, Wiemken A (2004) Impact of long-term conventional and organic farming on the diversity of arbuscular mycorrhizal fungi. Oecologia 138: 574-583.
48. Oehl F, Laczko E, Bogenrieder A, Stahr K, Bosch R, van der Heijden M, Sieverding E (2010) Soil type and land use intensity determine the composition of arbuscular mycorrhizal fungal communities. Soil Biol Biochem 42: 724-738.
49. Öpik M, Moora M, Liira J, Zobel M (2006) Composition of root-colonizing arbuscular mycorrhizal fungal communities in different ecosystems around the globe. J Ecol 94: 778-790.
50. Rambaut A (1996) Se-Al: sequence alignment editor. Version 2. 0a11. User's Guide and application published at: http://tree. bio. ed. ac. uk/software/seal/.
51. Robertson W, Boyle C, Brown H (1988) Endomycorrhizal status of certified strawberry nursery stock. Journal of the American Society of Horticultural Science 113: 525-529.
52. Ross ME, Hoover EE (2004) The effects of cultivar on the Arbuscular mycorrhizal fungi symbiosis in strawberries. Hortscience 39: 824-825.
53. Ryan MH, Small DR, Ash JE (2000) Phosphorus controls the level of colonisation by arbuscular mycorrhizal fungi in conventional and biodynamic irrigated dairy pastures. Aust J Exp Agric 40: 663-670.
54. Santos JC, Finlay RD, Tehler A (2006) Molecular analysis of arbuscular mycorrhizal fungi colonising a semi-natural grassland along a fertilisation gradient. New Phytol 172: 159-168.
55. Santos-González JC, Finlay RD, Tehler A (2007) Seasonal dynamics of arbuscular mycorrhizal fungal communities in roots in a seminatural grassland. Appl Environ Microbiol 73: 5613-5623.
56. Schechter SP, Bruns TD (2008) Serpentine and non-serpentine ecotypes of Collinsia sparsiflora associate with distinct arbuscular mycorrhizal fungal assemblages. Mol Ecol 17: 3198-3210.
57. Schüßler A, Schwarzott D, Walker C (2001) A new fungal phylum, the Glomeromycota: phylogeny and evolution. Mycol Res 2001: 1413-1421.
58. Singh BK, Nunan N, Ridgway KP, McNicol J, Peter J, Young W, Daniell TJ, Prosser JI, Millard P (2008) Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environ Microbiol 10: 534-541.
59. Solow AR (2000) The effect of dependence on estimating sample coverage. Environmetrics 11: 245-249.
60. Swofford D (2002) Phylogenetic analysis using parsimony (*and Other Methods). Version 4. Sinauer Asssociates, Sunderland, Massachusets.
61. Tehler A, Little DP, Farris JS (2003) The full-length phylogenetic tree from 1551 ribosomal sequences of chitinous fungi, fungi. Mycol Res 107: 901-916.
62. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
63. Thornhill D, Lajeunesse T, Santos S (2007) Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates. Mol Ecol 16: 5326-5340.
64. Toljander JF, Santos-González JC, Tehler A, Finlay RD (2008) Community composition of arbuscular mycorrhizal fungi and bacteria in the maize mycorrhizosphere in a long-term fertilisation trial. FEMS Microbiol Ecol 65: 323-338.
65. Vandenkoornhuyse P, Ridgway K, Watson IJ, Fitter AH, Young JPW (2003) Co-existing grass species have distinctive arbuscular mycorrhizal communities. Mol Ecol 12: 3085-3095.
66. Verbruggen E, Rölling WFM, Gamper HA, Kowalchuk GA, Verhoef HA, Heijden MGAVD (2010) Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils. New Phytol 186: 968-979.
67. Vestberg M (1992) The effect of vesicular-arbuscular mycorrhizal inoculation on the growth and root colonization of ten strawberry cultivars. Agric Sci Finl 1: 527-535.
68. Wang GM, Stribley DP, Tinker PB, Walker C (1993) Effects of pH on arbuscular mycorrhiza: I. Field observations on the long-term liming experiments at Rothamsted and Woburn. New Phytol 124: 465-472.