Cellular Expression of Smarca4 (Brg1)-regulated Genes in Zebrafish Retinas

BMC Developmental Biology

Volumn 11, Issue , 2011, Pages

  Hensley, Monica ^a   Emran, Farida ^b   Bonilla, Sylvia ^a   Zhang, Liyun ^a   Zhong, Wenxuan ^c   Grosu, Paul ^b   Dowling, John ^b   Leung, Yuk ^a,b  

^a PURDUE UNIVERSITY   (United States)

^b HARVARD UNIVERSITY   (United States)

^c UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DANIO RERIO;

BRG1 PROTEIN, ZEBRAFISH; HELICASE; ZEBRAFISH PROTEIN;

ANIMAL; ANIMAL EMBRYO; ARTICLE; CYTOLOGY; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MICROARRAY ANALYSIS; PHYSIOLOGY; PRENATAL DEVELOPMENT; RETINA; RETINA GANGLION CELL; ZEBRA FISH;

ANIMALS; DNA HELICASES; EMBRYO, NONMAMMALIAN; GENE EXPRESSION REGULATION; MICROARRAY ANALYSIS; RETINA; RETINAL GANGLION CELLS; ZEBRAFISH; ZEBRAFISH PROTEINS;

EID: 79960556527     PISSN: None     EISSN: 1471213X     Source Type: Journal    
DOI: 10.1186/1471-213X-11-45     Document Type: Article

References (31)

1. Vertebrate neural cell-fate determination: lessons from the retina. Livesey FJ Cepko CL, Nat Rev Neurosci 2001 2 109 18 10.1038/35053522 11252990 (Pubitemid 33673365)
2. Developmental biology. Gilbert SF, Sunderland, Mass.: Sinauer Associates, Inc. Publishers 8 2006
3. Retinal ganglion cell genesis requires lakritz, a Zebrafish atonal Homolog. Kay JN Finger-Baier KC Roeser T Staub W, Baier H,, Neuron 2001 30 725 36 10.1016/S0896-6273(01)00312-9 11430806 (Pubitemid 32607337)
4. Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes. Chen S Wang QL Nie Z Sun H, Lennon G Copeland NG, Gilbert DJ Jenkins NA, Zack DJ,, Neuron 1997 19 1017 30 10.1016/S0896-6273(00)80394-3 9390516 (Pubitemid 27512363)
5. Crx, a novel otx-like homeobox gene, shows photoreceptor-specific expression and regulates photoreceptor differentiation. Furukawa T Morrow EM Cepko CL,, Cell 1997 91 531 41 10.1016/S0092-8674(00)80439-0 9390562 (Pubitemid 27508242)
6. Patterning of the zebrafish retina by a wave of sonic hedgehog activity. Neumann CJ Nuesslein-Volhard C, Science 2000 289 2137 9 10.1126/science.289. 5487.2137 11000118
7. nagie oko, encoding a MAGUK-family protein, is essential for cellular patterning of the retina. Wei X Malicki J, Nat Genet 2002 31 150 7 10.1038/ng883 11992120
8. N-cadherin mediates retinal lamination, maintenance of forebrain compartments and patterning of retinal neurites. Masai I Lele Z, Yamaguchi M Komori A, Nakata A Nishiwaki Y, Wada H Tanaka H, Nojima Y Hammerschmidt M,, et al. Development 2003 130 2479 94 10.1242/dev.00465 12702661 (Pubitemid 36722398)
9. Positional cloning of the young mutation identifies an essential role for the Brahma chromatin remodeling complex in mediating retinal cell differentiation. Gregg RG Willer GB Fadool JM Dowling JE, Link BA,, Proc Natl Acad Sci USA 2003 100 6535 40 10.1073/pnas.0631813100 12748389 (Pubitemid 36666616)
10. The zebrafish young mutation acts non-cell-autonomously to uncouple differentiation from specification for all retinal cells. Link BA Fadool JM, Malicki J Dowling JE, Development 2000 127 2177 88 10769241 (Pubitemid 30386681)
11. Visual System Development in Vertebrates. Johnson KG Shewan D Holt CE,, Book Visual System Development in Vertebrates City: John Wiley & Sons, Ltd 2005
12. Factorial microarray analysis of zebrafish retinal development. Leung YF Ma P, Link BA Dowling JE, Proc Natl Acad Sci USA 2008 105 12909 14 10.1073/pnas.0806038105 18753621
13. Retinal neurogenesis: the formation of the initial central patch of postmitotic cells. Hu M Easter SS, Dev Biol 1999 207 309 21 10.1006/dbio.1998. 9031 10068465 (Pubitemid 29136346)
14. Comparison of topographical patterns of ganglion and photoreceptor cell differentiation in the retina of the zebrafish, Danio rerio. Schmitt EA Dowling JE, J Comp Neurol 1996 371 222 34 10.1002/(SICI)1096-9861(19960722)371:2<222: :AID-CNE3>3.0.CO;2-4 8835728 (Pubitemid 26260012)
15. Early retinal development in the zebrafish, Danio rerio: light and electron microscopic analyses. Schmitt EA Dowling JE, J Comp Neurol 1999 404 515 36 10.1002/(SICI)1096-9861(19990222)404:4<515::AID-CNE8>3.0.CO;2-A 9987995 (Pubitemid 29084639)
16. Developmental patterning of rod and cone photoreceptors in embryonic zebrafish. Raymond PA Barthel LK Curran GA,, J Comp Neurol 1995 359 537 50 10.1002/cne.903590403 7499546
17. Visual excitation and recovery. Stryer L, J Biol Chem 1991 266 10711 4 1710212 (Pubitemid 21906859)
18. Id2a influences neuron and glia formation in the zebrafish retina by modulating retinoblast cell cycle kinetics. Uribe RA Gross JM, Development 2010 137 3763 74 10.1242/dev.050484 20943708
19. Loss of LMO4 in the retina leads to reduction of GABAergic amacrine cells and functional deficits. Duquette PM Zhou X Yap NL MacLaren EJ, Lu JJ Wallace VA, Chen HH,, PLoS One 2010 5 13232 10.1371/journal.pone.0013232 20949055
20. BARHL2 differentially regulates the development of retinal amacrine and ganglion neurons. Ding Q Chen H, Xie X Libby RT, Tian N Gan L, J Neurosci 2009 29 3992 4003 10.1523/JNEUROSCI.5237-08.2009 19339595
21. AP-2alpha knockout mice exhibit optic cup patterning defects and failure of optic stalk morphogenesis. Bassett EA Williams T, Zacharias AL Gage PJ, Fuhrmann S West-Mays JA, Hum Mol Genet 2010 19 1791 804 10.1093/hmg/ddq060 20150232
22. The homeobox gene irx1a is required for the propagation of the neurogenic waves in the zebrafish retina. Cheng CW Yan CH Hui CC Strahle U, Cheng SH,, Mech Dev 2006 123 252 63 10.1016/j.mod.2005.12.001 16457994
23. A cascade of irx1a and irx2a controls shh expression during retinogenesis. Choy SW Cheng CW, Lee ST Li VW, Hui MN Hui CC, Liu D Cheng SH, Dev Dyn 2010 239 3204 14 10.1002/dvdy.22462 21046643
24. Redundant activities of Tfap2a and Tfap2c are required for neural crest induction and development of other non-neural ectoderm derivatives in zebrafish embryos. Li W Cornell RA, Dev Biol 2007 304 338 54 10.1016/j.ydbio.2006.12.042 17258188 (Pubitemid 46399696)
25. Foxn4 controls the genesis of amacrine and horizontal cells by retinal progenitors. Li S Mo Z, Yang X Price SM, Shen MM Xiang M, Neuron 2004 43 795 807 10.1016/j.neuron.2004.08.041 15363391 (Pubitemid 39215011)
26. The zebrafish book: a guide for the laboratory use of zebrafish (Danio rerio). Westerfield M, Eugene, OR: University of Oregon Press 4 2000
27. Zebrafish: a practical approach. Nusslein-Volhard C Dahm R (eds),, Oxford; New York: Oxford University Press 1 2002
28. Stages of embryonic development of the zebrafish. Kimmel CB Ballard WW Kimmel SR Ullmann B, Schilling TF,, Dev Dyn 1995 203 253 310 10.1002/aja.1002030302 8589427
29. Gene expression profiling of zebrafish embryonic retina. Leung YF Dowling JE, Zebrafish 2005 2 269 83 10.1089/zeb.2005.2.269 18248185
30. Primer3 on the WWW for general users and for biologist programmers. Rozen S Skaletsky HJ, Bioinformatics Methods and Protocols: Methods in Molecular Biology Totowa, NJ Humana Press, Krawetz S, Misener S, 2000 365 386
31. Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Suzuki R Shimodaira H, Bioinformatics 2006 22 1540 2 10.1093/bioinformatics/btl117 16595560 (Pubitemid 43985330)