Hydrodynamic properties of wormlike macromolecules: Monte carlo simulation and global analysis of experimental data

Macromolecules

Volumn 44, Issue 14, 2011, Pages 5788-5797

  Amoros D ^a   Ortega, A ^a   Garcia De La Torre J ^a  

^a UNIVERSITY OF MURCIA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BASE PAIRS; BIOLOGICAL MACROMOLECULE; COMPUTATIONAL TOOLS; DOUBLE HELIX; DOUBLE STRANDED DNA; EXCLUDED VOLUME EFFECTS; EXPERIMENTAL DATA; FLEXIBLE CHAINS; GLOBAL ANALYSIS; HYDRODYNAMIC CALCULATION; HYDRODYNAMIC COEFFICIENTS; HYDRODYNAMIC PROPERTIES; MONTE CARLO SIMULATION; MULTIPLE SAMPLES; POLY(ISOBUTYLENE); SCHIZOPHYLLAN; SHORT CYLINDER; SIMULATION RESULT; SOLUTION PROPERTY; STRUCTURAL PARAMETER;

BUTENES; HYDRODYNAMICS; MACROMOLECULES; MONTE CARLO METHODS; OLIGOMERS; SAILING VESSELS;

COMPUTER SIMULATION;

EID: 79960550648     PISSN: 00249297     EISSN: None     Source Type: Journal    
DOI: 10.1021/ma102697q     Document Type: Article

References (68)

1. Kratky, O.; Porod, G. Recl. Trav. Chim. Pays-Bas 1949, 68, 1106-1122
2. McNaught, A. D.; Wilkinson, A. Compendium of Chemical Terminology. The Gold Book, 2 nd ed.; Blackwell Science: London, 1997.
3. Bloomfield, V.; Crothers, D.; Tinoco, I. Physical Chemistry of Nucleic Acids; Harper and Row: New York, 1974.
4. Bloomfield, V.; Crothers, D.; Tinoco, Jr., I. Nucleic Acids: Structures, Properties and Functions; University Science Books: Sausalito, CA, 2000.
5. Sho, T.; Sato, T.; Norisuye, T. Biophys. Chem. 1986, 25, 307-313
6. Harding, S.; Berth, G.; Ball, A.; Mitchell, J.; García de la Torre, J. Carbohydr. Polym. 1991, 16, 1-15
7. Yamakawa, H.; Fujii, M. J. Chem. Phys. 1973, 6, 408-414
8. Yamakawa, H.; Fujii, M. Macromolecules 1974, 7, 128-135
9. Yamakawa, H.; Fujii, M. Macromolecules 1974, 7, 649-654
10. García de la Torre, J.; López Martínez, M.; Tirado, M.; Freire, J. Macromolecules 1983, 16, 1121-1127
11. García de la Torre, J.; López Martínez, M.; Tirado, M.; Freire, J. Macromolecules 1984, 17, 2715-2722
12. Zimm, B. Macromolecules 1980, 13, 592-602
13. Hagerman, P.; Zimm, B. Biopolymers 1981, 20, 1481-1502
14. García de la Torre, J.; Jiménez, A.; Freire, J. Macromolecules 1982, 15, 148-154
15. Kirkwood, J.; Riseman, J. J. Chem. Phys. 1948, 16, 565-573
16. García de la Torre, J.; Bloomfield, V. Q. Rev. Biophys. 1981, 14, 81-139
17. García Bernal, J.; Tirado, M.; Freire, J.; García de la Torre, J. Macromolecules 1990, 23, 3357-3362
18. García Bernal, J.; Tirado, M.; García de la Torre, J. Macromolecules 1991, 24, 593-598
19. García Molina, J.; López Martínez, M. C.; García de la Torre, J. Biopolymers 1990, 29, 883-900
20. Mansfield, M. L.; Douglas, J. F. Macromolecules 2008, 41, 5412-5421
21. García de la Torre, J.; Del Río Echenique, G.; Ortega, A. J. Phys. Chem. B 2007, 111, 955-961
22. Ortega, A.; García de la Torre, J. Biomacromolecules 2007, 8, 2464-2475
23. Benoit, H.; Doty, P. J. Phys. Chem. 1953, 57, 958-963
24. Carrasco, B.; García de la Torre, J. Biophys. J. 1999, 76, 3044-3057
25. Carrasco, B.; García de la Torre, J. J. Chem. Phys. 1999, 111, 4817-4826
26. Ortega, A.; García de la Torre, J. J. Am. Chem. Soc. 2005, 127, 12764-12765
27. García de la Torre, J.; Amorós, D.; Ortega, A. Eur. Biophys. J. 2010, 39, 381-388
28. Schellman, J. Biophys. Chem. 1980, 11, 329-337
29. Flory, P. Statistical Mechanics of Chain Molecules; Interscience: New York, 1969.
30. Yanaki, T.; Norisuye, T.; Fujita, H. Macromolecules 1980, 13, 1462-1465
31. Huber, K.; Burchard, A. A., W. Macromolecules 1985, 18, 2743-2747
32. Einaga, Y.; Koyama, H.; Konishi, T.; Yamakawa, H. Macromolecules 1989, 22, 3419-3424
33. Ortega, A.; García de la Torre, J. J. Chem. Phys. 2003, 119, 9914-9919
34. Youngren, G.; Acrivos, A. J. Fluid Mech. 1975, 69, 377-403
35. Yamakawa, H. Macromolecules 1975, 8, 339-342
36. Yoshizaki, T.; Yamakawa, H. J. Chem. Phys. 1980, 72, 57-79
37. Bonet Avalos, J.; Rubí, J.; Bedeaux, D. Macromolecules 1993, 26, 2550-2561
38. Flory, P.; T. G., F., Jr. J. Am. Chem. Soc. 1951, 73, 1904-1908
39. Flory, P. Principles of Polymer Chemistry; Cornell University Press: Ithaca, NY, 1953.
40. Miyaki, Y.; Einaga, Y.; Fujita, H.; Fukuda, M. Macromolecules 1980, 13, 588-592
41. Schmidt, M.; Burchard, W. Macromolecules 1981, 14, 210-211
42. Bohdanecky, M.; Petrus, V.; Porsch, B.; Sundelof, L. Makromol. Chem. 1983, 184, 309-317
43. Stigter, D. Biopolymers 1977, 16, 1435-1448
44. Vologodskii, A.; Cozzarelli, N. Biopolymers 1995, 35, 289-296
45. Rybenkov, V.; Vologodskii, A.; Cozzarelli, N. Nucleic Acids Res. 1997, 25, 1412-1418
46. Jamieson, A.; Venkataswamy, K. Polym. Bull. 1984, 12, 275-282
47. Venkataswamy, K.; Jamieson, A.; Petschek, R. Macromolecules 1986, 19, 124-133
48. LeGuillou, J. C.; Zinn-Justin, J. Phys. Rev. Lett. 1977, 39, 95-98
49. Rawiso, M.; Duplessix, R.; Picot, C. Macromolecules 1987, 20, 630-648
50. Muddiman, D.; Mull, A.; Hannis, J. Rapid Commun. Mass Spectrom. 1999, 13, 1201-1204
51. Dolozel, J.; Bartos, J.; Voglmayr, H.; Greilhuber, J. Cytometry 2003, 51A, 127-128
52. Bowen, B.; Zimm, B. Biophys. Chem. 1978, 7, 235-252
53. Eimer, W.; Williamson, J.; Boxer, S.; Pecora, R. Biochemistry 1990, 29, 799-811
54. Fernandes, M.; Ortega, A.; López Martínez, M.; García de la Torre, J. Nucleic Acids Res. 2002, 30, 1782-1788
55. Tirado, M.; López Martnez, M.; García de la Torre, J. J. Chem. Phys. 1984, 81, 2047-2052
56. Kashiwagi, Y.; Norisuye, T.; Fujita, H. Macromolecules 1981, 14, 1220-1225
57. Murakami, H.; Norisuye, T.; Fujita, H. Macromolecules 1980, 13, 345-352
58. Rubingh, D.; Yu, H. Macromolecules 1976, 9, 681-685
59. Abe, F.; Einaga, Y.; Yamakawa, H. Macromolecules 1993, 26, 1891-1897
60. Osa, M.; Abe, F.; Yoshizaki, T.; Einaga, Y.; Yamakawa, H. Macromolecules 1996, 29, 2302-2308
61. Yamada, M.; Osa, M.; Yoshizaki, T.; Yamakawa, H. Macromolecules 1997, 30, 7166-7170
62. Fetters, L. J.; Hadjichristidis, N.; Lindner, J. S.; Mays, J. W.; Wilson, W. W. Macromolecules 1991, 24, 3127-3135
63. Yamakawa, H. Polym. J. 1999, 31, 109-119
64. Stigter, D.; Dill, K. J. Phys. Chem. 1993, 97, 12995-12997
65. Odijk, T. J. Polym. Sci., Part B: Polym. Phys. 1977, 15, 477-483
66. Skolnick, J.; Fixman, M. Macromolecules 1977, 10, 944-948
67. Schmidt, M. Macromolecules 1991, 24, 5361-5364
68. Fixman, M. J. Phys. Chem. B 2010, 114, 3185-3196