Structures of the major capsid proteins of the human karolinska institutet and Washington University polyomaviruses

Journal of Virology

Volumn 85, Issue 14, 2011, Pages 7384-7392

  Neu, Ursula ^a   Wang, Jianbo ^a,d   Macejak, Dennis ^b   Garcea, Robert L ^b   Stehle, Thilo ^a,c  

^a UNIVERSITY OF TÜBINGEN   (Germany)

^b UNIVERSITY OF COLORADO   (United States)

^c VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d CAPITAL NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN VP1; RECOMBINANT PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BETA SHEET; CONTROLLED STUDY; CRYSTAL STRUCTURE; CRYSTALLIZATION; KAROLINSKA INSTITUTET POLYOMAVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYOMA VIRUS; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN FOLDING; PROTEIN STRUCTURE; SPECIES DIFFERENCE; STRUCTURAL HOMOLOGY; STRUCTURE ANALYSIS; VIRUS CAPSID; WASHINGTON UNIVERSITY POLYOMAVIRUS;

AMINO ACID SEQUENCE; CAPSID PROTEINS; CRYSTALLIZATION; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; POLYOMAVIRUS; PROTEIN CONFORMATION; SEQUENCE HOMOLOGY, AMINO ACID;

MIRIDAE; MURINE POLYOMAVIRUS; POLYOMAVIRUS; SIMIAN VIRUS 40;

EID: 79960432650     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.00382-11     Document Type: Article

References (28)

1. Afonine, P. V., R. W. Grosse-Kunstleve, and P. D. Adams. 2005. The Phenix refinement framework. CCP4 Newsl. 42:Contribution 8.
2. Allander, T., et al. 2007. Identification of a third human polyomavirus. J. Virol. 81:4130-4136.
3. Brunger, A. T. 1992. Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. Nature 355:472-475.
4. CCP4. 1994. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50:760-763.
5. Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
6. Emsley, P., and K. Cowtan. 2004. Coot: model-building tools for molecular graphics. Acta Crystallogr. D Biol. Crystallogr. 60:2126-2132.
7. Erickson, K. D., R. L. Garcea, and B. Tsai. 2009. Ganglioside GT1b is a putative host cell receptor for the Merkel cell polyomavirus. J. Virol. 83: 10275-10279.
8. Feng, H., M. Shuda, Y. Chang, and P. S. Moore. 2008. Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science 319:1096-1100.
9. Gaynor, A. M., et al. 2007. Identification of a novel polyomavirus from patients with acute respiratory tract infections. PLoS Pathog. 3:e64.
10. Giroglou, T., L. Florin, F. Schafer, R. E. Streeck, and M. Sapp. 2001. Human papillomavirus infection requires cell surface heparan sulfate. J. Virol. 75: 1565-1570.
11. Jiang, M., J. R. Abend, S. F. Johnson, and M. J. Imperiale. 2009. The role of polyomaviruses in human disease. Virology 384:266-273.
12. Joyce, J. G., et al. 1999. The L1 major capsid protein of human papillomavirus type 11 recombinant virus-like particles interacts with heparin and cell-surface glycosaminoglycans on human keratinocytes. J. Biol. Chem. 274: 5810-5822.
13. Kabsch, W. 1993. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallogr. 26:795-800.
14. Kean, J. M., S. Rao, M. Wang, and R. L. Garcea. 2009. Seroepidemiology of human polyomaviruses. PLoS Pathog. 5:e1000363.
15. Kleywegt, G. J. 1996. Use of non-crystallographic symmetry in protein structure refinement. Acta Crystallogr. D Biol. Crystallogr. 52:842-857.
16. Liddington, R. C., et al. 1991. Structure of simian virus 40 at 3.8-Å resolution. Nature 354:278-284.
17. McCoy, A. J., et al. 2007. Phaser crystallographic software. J. Appl. Crystallogr. 40:658-674.
18. Murshudov, G. N., A. A. Vagin, and E. J. Dodson. 1997. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53:240-255.
19. Neu, U., et al. 2010. Structure-function analysis of the human JC polyomavirus establishes the LSTc pentasaccharide as a functional receptor motif. Cell Host Microbe 8:309-319.
20. Neu, U., K. Woellner, G. Gauglitz, and T. Stehle. 2008. Structural basis of GM1 ganglioside recognition by simian virus 40. Proc. Natl. Acad. Sci. U. S. A. 105:5219-5224.
21. Schowalter, R. M., D. V. Pastrana, K. A. Pumphrey, A. L. Moyer, and C. B. Buck. 2010. Merkel cell polyomavirus and two previously unknown polyomaviruses are chronically shed from human skin. Cell Host Microbe 7:509-515.
22. Scuda, N., et al. 2011. A novel human polyomavirus closely related to the African green monkey-derived lymphotropic polyomavirus (LPV). J. Virol.
23. Stehle, T., S. J. Gamblin, Y. Yan, and S. C. Harrison. 1996. The structure of simian virus 40 refined at 3.1 Å resolution. Structure 4:165-182.
24. Stehle, T., and S. C. Harrison. 1996. Crystal structures of murine polyomavirus in complex with straight-chain and branched-chain sialyloligosaccharide receptor fragments. Structure 4:183-194.
25. Stehle, T., and S. C. Harrison. 1997. High-resolution structure of a polyomavirus VP1-oligosaccharide complex: implications for assembly and receptor binding. EMBO J. 16:5139-5148.
26. Stehle, T., Y. Yan, T. L. Benjamin, and S. C. Harrison. 1994. Structure of murine polyomavirus complexed with an oligosaccharide receptor fragment. Nature 369:160-163.
27. Tsai, B., et al. 2003. Gangliosides are receptors for murine polyomavirus and SV40. EMBO J. 22:4346-4355.
28. van der Meijden, E., et al. 2010. Discovery of a new human polyomavirus associated with trichodysplasia spinulosa in an immunocompromised patient. PLoS Pathog. 6:e1001024.