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Volumn 193, Issue 15, 2011, Pages 3956-3963

Comparative genomic analysis of the hexuronate metabolism genes and their regulation in gammaproteobacteria

Author keywords

[No Author keywords available]

Indexed keywords

HEXURONIC ACID; TRANSCRIPTION FACTOR;

EID: 79960392023     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00277-11     Document Type: Article
Times cited : (36)

References (33)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul, S. F., et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 2
    • 78651339534 scopus 로고    scopus 로고
    • NCBI GEO: archive for functional genomics data sets _10 years on
    • Barrett, T., et al. 2011. NCBI GEO: archive for functional genomics data sets _10 years on. Nucleic Acids Res. 39:D1005-D1010.
    • (2011) Nucleic Acids Res , vol.39
    • Barrett, T.1
  • 3
    • 7744240779 scopus 로고    scopus 로고
    • GntP is the Escherichia coli fructuronic acid transporter and belongs to the UxuR regulon
    • Bates-Utz, C., A. B. Nguyen, D. J. Smalley, A. B. Anderson, and T. Conway. 2004. GntP is the Escherichia coli fructuronic acid transporter and belongs to the UxuR regulon. J. Bacteriol. 186:7690-7696.
    • (2004) J. Bacteriol. , vol.186 , pp. 7690-7696
    • Bates-Utz, C.1    Nguyen, A.B.2    Smalley, D.J.3    Anderson, A.B.4    Conway, T.5
  • 5
    • 0037162469 scopus 로고    scopus 로고
    • Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
    • Bernstein, J. A., A. B. Khodursky, P. H. Lin, S. Lin-Chao, and S. N. Cohen. 2002. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc. Natl. Acad. Sci. U. S. A. 99:9697-9702.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 9697-9702
    • Bernstein, J.A.1    Khodursky, A.B.2    Lin, P.H.3    Lin-Chao, S.4    Cohen, S.N.5
  • 6
    • 0020682131 scopus 로고
    • Construction of hybrid plasmids containing the Escherichia coli uxaB gene: analysis of its regulation and direction of transcription
    • Blanco, C., M. Mata-Gilsinger, and P. Ritzenthaler. 1983. Construction of hybrid plasmids containing the Escherichia coli uxaB gene: analysis of its regulation and direction of transcription. J. Bacteriol. 153:747-755.
    • (1983) J. Bacteriol. , vol.153 , pp. 747-755
    • Blanco, C.1    Mata-Gilsinger, M.2    Ritzenthaler, P.3
  • 7
    • 0022668708 scopus 로고
    • Negative dominant mutations of the uidR gene in Escherichia coli: genetic proof for a cooperative regulation of uidA expression
    • Blanco, C., P. Ritzenthaler, and M. Mata-Gilsinger. 1986. Negative dominant mutations of the uidR gene in Escherichia coli: genetic proof for a cooperative regulation of uidA expression. Genetics 112:173-182.
    • (1986) Genetics , vol.112 , pp. 173-182
    • Blanco, C.1    Ritzenthaler, P.2    Mata-Gilsinger, M.3
  • 9
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar, R. C. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinform. 5:113.
    • (2004) BMC Bioinform , vol.5 , pp. 113
    • Edgar, R.C.1
  • 10
    • 0032934941 scopus 로고    scopus 로고
    • Consequences of reduction of Klebsiella pneumoniae capsule expression on interactions of this bacterium with epithelial cells
    • Favre-Bonte, S., B. Joly, and C. Forestier. 1999. Consequences of reduction of Klebsiella pneumoniae capsule expression on interactions of this bacterium with epithelial cells. Infect. Immun. 67:554-561.
    • (1999) Infect. Immun. , vol.67 , pp. 554-561
    • Favre-Bonte, S.1    Joly, B.2    Forestier, C.3
  • 11
    • 0029901637 scopus 로고    scopus 로고
    • Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
    • Felsenstein, J. 1996. Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol. 266:418-427.
    • (1996) Methods Enzymol , vol.266 , pp. 418-427
    • Felsenstein, J.1
  • 12
    • 0030967906 scopus 로고    scopus 로고
    • TRAP transporters: a new family of periplasmic solute transport systems encoded by the dctPQM genes of Rhodobacter capsulatus and by homologs in diverse gram-negative bacteria
    • Forward, J. A., M. C. Behrendt, N. R. Wyborn, R. Cross, and D. J. Kelly. 1997. TRAP transporters: a new family of periplasmic solute transport systems encoded by the dctPQM genes of Rhodobacter capsulatus and by homologs in diverse gram-negative bacteria. J. Bacteriol. 179:5482-5493.
    • (1997) J. Bacteriol. , vol.179 , pp. 5482-5493
    • Forward, J.A.1    Behrendt, M.C.2    Wyborn, N.R.3    Cross, R.4    Kelly, D.J.5
  • 13
    • 0034141782 scopus 로고    scopus 로고
    • Prediction of transcription regulatory sites in Archaea by a comparative genomic approach
    • Gelfand, M. S., E. V. Koonin, and A. A. Mironov. 2000. Prediction of transcription regulatory sites in Archaea by a comparative genomic approach. Nucleic Acids Res. 28:695-705.
    • (2000) Nucleic Acids Res , vol.28 , pp. 695-705
    • Gelfand, M.S.1    Koonin, E.V.2    Mironov, A.A.3
  • 14
    • 0034889137 scopus 로고    scopus 로고
    • The tripartite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea
    • Kelly, D. J., and G. H. Thomas. 2001. The tripartite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea. FEMS Microbiol. Rev. 25:405-424.
    • (2001) FEMS Microbiol. Rev. , vol.25 , pp. 405-424
    • Kelly, D.J.1    Thomas, G.H.2
  • 16
    • 13244279408 scopus 로고    scopus 로고
    • Multiple regulators control expression of the Entner-Doudoroff aldolase (Eda) of Escherichia coli
    • Murray, E. L., and T. Conway. 2005. Multiple regulators control expression of the Entner-Doudoroff aldolase (Eda) of Escherichia coli. J. Bacteriol. 187:991-1000.
    • (2005) J. Bacteriol. , vol.187 , pp. 991-1000
    • Murray, E.L.1    Conway, T.2
  • 17
    • 0017126755 scopus 로고
    • Regulation of beta-glucuronidase synthesis in Escherichia coli K-12: pleiotropic constitutive mutations affecting uxu and uidA expression
    • Novel, M., and G. Novel. 1976. Regulation of beta-glucuronidase synthesis in Escherichia coli K-12: pleiotropic constitutive mutations affecting uxu and uidA expression. J. Bacteriol. 127:418-432.
    • (1976) J. Bacteriol. , vol.127 , pp. 418-432
    • Novel, M.1    Novel, G.2
  • 18
    • 75549086541 scopus 로고    scopus 로고
    • RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
    • Novichkov, P. S., et al. 2010. RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. Nucleic Acids Res. 38:D111-D118.
    • (2010) Nucleic Acids Res , vol.38
    • Novichkov, P.S.1
  • 19
    • 77954254495 scopus 로고    scopus 로고
    • RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
    • Novichkov, P. S., et al. 2010. RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. Nucleic Acids Res. 38:W299-W307.
    • (2010) Nucleic Acids Res , vol.38
    • Novichkov, P.S.1
  • 20
    • 0035945242 scopus 로고    scopus 로고
    • Mode of DNA-protein interaction between the C-terminal domain of Escherichia coli RNA polymerase alpha subunit and T7D promoter UP element
    • Ozoline, O. N., N. Fujita, and A. Ishihama. 2001. Mode of DNA-protein interaction between the C-terminal domain of Escherichia coli RNA polymerase alpha subunit and T7D promoter UP element. Nucleic Acids Res. 29:4909-4919.
    • (2001) Nucleic Acids Res , vol.29 , pp. 4909-4919
    • Ozoline, O.N.1    Fujita, N.2    Ishihama, A.3
  • 21
    • 78149317234 scopus 로고    scopus 로고
    • Cancer Targeting bacteria to improve cancer therapy
    • Patel, A. G., and S. H. Kaufmann. 2010. Cancer Targeting bacteria to improve cancer therapy. Science 330:766-767.
    • (2010) Science , vol.330 , pp. 766-767
    • Patel, A.G.1    Kaufmann, S.H.2
  • 22
    • 0019148881 scopus 로고
    • Regulation of Escherichia coli K-12 hexuronate system genes: exu regulon
    • Portalier, R., J. Robert-Baudouy, and F. Stoeber. 1980. Regulation of Escherichia coli K-12 hexuronate system genes: exu regulon. J. Bacteriol. 143: 1095-1107.
    • (1980) J. Bacteriol. , vol.143 , pp. 1095-1107
    • Portalier, R.1    Robert-Baudouy, J.2    Stoeber, F.3
  • 23
    • 33751226921 scopus 로고    scopus 로고
    • Systems approach to refining genome annotation
    • Reed, J. L., et al. 2006. Systems approach to refining genome annotation. Proc. Natl. Acad. Sci. U. S. A. 103:17480-17484.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 17480-17484
    • Reed, J.L.1
  • 24
    • 0021839924 scopus 로고
    • Genetic analysis of uxuR and exuR genes: evidence for ExuR and UxuR monomer repressors interactions
    • Ritzenthaler, P., C. Blanco, and M. Mata-Gilsinger. 1985. Genetic analysis of uxuR and exuR genes: evidence for ExuR and UxuR monomer repressors interactions. Mol. Gen. Genet. 199:507-511.
    • (1985) Mol. Gen. Genet. , vol.199 , pp. 507-511
    • Ritzenthaler, P.1    Blanco, C.2    Mata-Gilsinger, M.3
  • 25
    • 0019905714 scopus 로고
    • Use of in vitro gene fusions to study the uxuR regulatory gene in Escherichia coli K-12: direction of transcription and regulation of its expression
    • Ritzenthaler, P., and M. Mata-Gilsinger. 1982. Use of in vitro gene fusions to study the uxuR regulatory gene in Escherichia coli K-12: direction of transcription and regulation of its expression. J. Bacteriol. 150:1040-1047.
    • (1982) J. Bacteriol. , vol.150 , pp. 1040-1047
    • Ritzenthaler, P.1    Mata-Gilsinger, M.2
  • 26
    • 0019475229 scopus 로고
    • Regulation of hexuronate system genes in Escherichia coli K-12: multiple regulation of the uxu operon by exuR and uxuR gene products
    • Robert-Baudouy, J., R. Portalier, and F. Stoeber. 1981. Regulation of hexuronate system genes in Escherichia coli K-12: multiple regulation of the uxu operon by exuR and uxuR gene products. J. Bacteriol. 145:211-220.
    • (1981) J. Bacteriol. , vol.145 , pp. 211-220
    • Robert-Baudouy, J.1    Portalier, R.2    Stoeber, F.3
  • 27
    • 0016392626 scopus 로고
    • Regulation of hexuronate metabolism in Escherichia coli K-12, Kinetics of enzyme induction of the hexuronate system
    • Robert-Baudouy, J. M., R. C. Portalier, and F. R. Stoeber. 1974. Regulation of hexuronate metabolism in Escherichia coli K-12. Kinetics of enzyme induction of the hexuronate system. Eur. J. Biochem. 43:1-15.
    • (1974) Eur. J. Biochem. , vol.43 , pp. 1-15
    • Robert-Baudouy, J.M.1    Portalier, R.C.2    Stoeber, F.R.3
  • 28
    • 34548219522 scopus 로고    scopus 로고
    • Comparative genomic reconstruction of transcriptional regulatory networks in bacteria
    • Rodionov, D. A. 2007. Comparative genomic reconstruction of transcriptional regulatory networks in bacteria. Chem. Rev. 107:3467-3497.
    • (2007) Chem. Rev. , vol.107 , pp. 3467-3497
    • Rodionov, D.A.1
  • 29
    • 9144270620 scopus 로고    scopus 로고
    • Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gammaproteobacteria
    • Rodionov, D. A., M. S. Gelfand, and N. Hugouvieux-Cotte-Pattat. 2004. Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gammaproteobacteria. Microbiology 150:3571-3590.
    • (2004) Microbiology , vol.150 , pp. 3571-3590
    • Rodionov, D.A.1    Gelfand, M.S.2    Hugouvieux-Cotte-Pattat, N.3
  • 30
    • 0033639196 scopus 로고    scopus 로고
    • Transcriptional regulation of transport and utilization systems for hexuronides, hexuronates, and hexonates in gamma purple bacteria
    • Rodionov, D. A., A. A. Mironov, A. B. Rakhmaninova, and M. S. Gelfand. 2000. Transcriptional regulation of transport and utilization systems for hexuronides, hexuronates, and hexonates in gamma purple bacteria. Mol. Microbiol. 38:673-683.
    • (2000) Mol. Microbiol. , vol.38 , pp. 673-683
    • Rodionov, D.A.1    Mironov, A.A.2    Rakhmaninova, A.B.3    Gelfand, M.S.4
  • 31
    • 30744445718 scopus 로고    scopus 로고
    • Novel ligands for the extracellular solute receptors of two bacterial TRAP transporters
    • Thomas, G. H., T. Southworth, M. R. Leon-Kempis, A. Leech, and D. J. Kelly. 2006. Novel ligands for the extracellular solute receptors of two bacterial TRAP transporters. Microbiology 152:187-198.
    • (2006) Microbiology , vol.152 , pp. 187-198
    • Thomas, G.H.1    Southworth, T.2    Leon-Kempis, M.R.3    Leech, A.4    Kelly, D.J.5
  • 33
    • 78149295964 scopus 로고    scopus 로고
    • Alleviating cancer drug toxicity by inhibiting a bacterial enzyme
    • Wallace, B. D., et al. 2010. Alleviating cancer drug toxicity by inhibiting a bacterial enzyme. Science 330:831-835.
    • (2010) Science , vol.330 , pp. 831-835
    • Wallace, B.D.1


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