Using " off-the-shelf" tools for terabyte-scale waveform recording in intensive care: Computer system design, database description and lessons learned

Computer Methods and Programs in Biomedicine

Volumn 103, Issue 3, 2011, Pages 151-160

  Burykin, Anton ^a,b   Peck, Tyler ^b   Buchman, Timothy G ^a,b  

^a EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b WASHINGTON UNIVERSITY   (United States)

Author keywords

Data acquisition; Databank; Database; Databasing; Intensive care; Physiologic signals; Physiological monitoring; Vital signs; Waveforms

Indexed keywords

DATABANK; DATABASE; DATABASING; INTENSIVE CARE; PHYSIOLOGIC SIGNALS; PHYSIOLOGICAL MONITORING; VITAL SIGN; WAVE FORMS;

COMPUTER SOFTWARE; DATABASE SYSTEMS; INVESTMENTS; PATIENT MONITORING; PHYSIOLOGY; SYSTEMS ANALYSIS;

COMPUTER HARDWARE;

ARTICLE; COMPUTER PROGRAM; COMPUTER SYSTEM; CRITICAL ILLNESS; DATA BASE; DATA COLLECTION METHOD; DATA STORAGE DEVICE; ELECTROCARDIOGRAM; HUMAN; INTENSIVE CARE; MAJOR CLINICAL STUDY; PATIENT MONITORING; VITAL SIGN; WAVEFORM;

COMPUTER SYSTEMS; DATABASES, FACTUAL; HUMANS; INTENSIVE CARE; MONITORING, PHYSIOLOGIC; SOFTWARE;

EID: 79960376131     PISSN: 01692607     EISSN: 18727565     Source Type: Journal    
DOI: 10.1016/j.cmpb.2010.10.004     Document Type: Article

References (43)

1. Goldstein B., McNames J., Ellenby M., Ibsen L., Jacques S., Aboy M., Thong T., Phillips C., Levitte G. ICU monitoring of physiologic signals: engineering aspects, clinical interpretation, and future directions. Current Concepts in Pediatric Critical Care 2004, 201-229. Soc Crit Care Med, Des Plaines, IL. T.P. Shanley (Ed.).
2. Moody G.B., MarkF R.G. A database to support development and evaluation of intelligent intensive care monitoring. Computers in Cardiology 1996.
3. Saeed M., Lieu C., Raber G., Mark R.G. MIMIC II: a massive temporal ICU patient database to support research in intelligent patient monitoring. Computers in Cardiology 2002.
4. Moody G.B., Mark R.G., Goldberger A.L. PhysioNet: a Web-based resource for the study of physiologic signals. IEEE Engineering in Medicine and Biology Magazine 2001, 20(3):70-75.
5. Nieminen K., Langford R.M., Morgan C.J., Takala J., Kari A. A clinical description of the IMPROVE Data Library. IEEE Engineering in Medicine and Biology Magazine 1997, 16(6). p. 21-4, 40.
6. Korhonen I., Ojaniemi J., Nieminen K., vanGils M., Heikela A., Kari A. Building the IMPROVE data library. IEEE Engineering in Medicine and Biology Magazine 1997, 16(6):25-32.
7. Thomsen C.E., Gade J., Nieminen K., Langford R.M., Ghosh I.R., Jensen K., van Gils M., Rosenfalck A., Prior P., White S. Collecting EEG signals in the IMPROVE Data Library. IEEE Engineering in Medicine and Biology Magazine 1997, 16(6):33-40.
8. Weller P., Hennessy T., Carson E. The IBIS system architecture. Computer Methods and Programs in Biomedicine 2000, 63(3):229-235.
9. Thomsen C.E., Cluitmans L., Lipping T. Exploring the IBIS data library contents: tools for data visualisation, (pre-) processing and screening. Computer Methods and Programs in Biomedicine 2000, 63(3):187-201.
10. Gade J., Korhonen I., van Gils M., Weller P., Pesu L. Technical description of the IBIS data library. Computer Methods and Programs in Biomedicine 2000, 63(3):175-186.
11. Jakob S.M., Nieminen K., Hiltunen J., Karhu J., Takala J. IBIS data library: clinical description of the Finnish database. Computer Methods and Programs in Biomedicine 2000, 63(3):161-166.
12. Mandersloot G.F., Pottinger R.C., Weller P.R., Prior P.F., Morgan C., Smith N.J., Langford R.M. The IBIS project: data collection in London. Computer Methods and Programs in Biomedicine 2000, 63(3):167-174.
13. Goldstein B., McNames J., McDonald B.A., Ellenby M., Lai S., Sun Z., Krieger D., Sclabassi R.J. Physiologic data acquisition system and database for the study of disease dynamics in the intensive care unit. Critical Care Medicine 2003, 31(2):433-441.
14. Korhonen I., van Gils M., Gade J. The challenges in creating critical-care databases. IEEE Engineering in Medicine and Biology Magazine 2001, 20(3):58-62.
15. Heldt T., Long B., Verghese G.C., Szolovits P., Mark R.G. Integrating data, models, and reasoning in critical care. Engineering in Medicine and Biology Society, 2006. EMBS '06. 28th Annual International Conference of the IEEE 2006.
16. Dawant B.M., Uckun S., Manders E.J., Lindstrom D.P. Simon-a distributed computer architecture for intelligent patient monitoring. Expert Systems with Applications 1993, 6(4):411-420.
17. Norris P.R., Dawant B.M. Closing the loop in ICU decision support: physiologic event detection, alerts, and documentation. Proceedings of the AMIA Symposium 2001, 498-502.
18. P.R. Norris, Toward New Vital Signs: Tools and Methods for Dense Physiologic Data Capture, Analysis, and Decision Support in Critical Care (PhD Dissertation). 2006, Vanderbilt University, Nashville, Tennessee.
19. Varri A., Kemp B., Penzel T., Schlogl A. Standards for biomedical signal databases. IEEE Engineering in Medicine and Biology Magazine 2001, 20(3):33-37.
20. Penzel T., Kemp B., Klosch G., Schlogl A., Hasan J., Varri A., Korhonen I. Acquisition of biomedical signals databases. IEEE Engineering in Medicine and Biology Magazine 2001, 20(3):25-32.
21. Seiver A. Chaos, computers, and critical care. Critical Care Medicine 2003, 31(2):642-644.
22. Kropyvnytskyy I., Saunders F., Schierek P., Pols M. A computer system for continuous long-term recording, processing, and analysis of physiological data of brain injured patients in ICU settings. Brain Injury 2001, 15(7):577-583.
23. Vinecore K., Aboy M., McNames J., Phillips C., Agbeko R., Peters M., Ellenby M., McManus M.L., Goldstein B. Design and implementation of a portable physiologic data acquisition system. Pediatric Critical Care Medicine 2007, 8(6):563-569.
24. Allart L., Vilhelm C., Mehdaoui H., Hubert H., Sarrazin B., Zitouni D., Lemdani M., Ravaux P. An architecture for online comparison and validation of processing methods and computerized guidelines in intensive care units. Computer Methods and Programs in Biomedicine 2009, 93(1):93-103.
25. Robertson T.E., Sona C., Schallom L., Buckles M., Cracchiolo L., Schuerer D., Coopersmith C.M., Song F., Buchman T.G. Improved extubation rates and earlier liberation from mechanical ventilation with implementation of a daily spontaneous-breathing trial protocol. Journal of the American College of Surgeons 2008, 206(3):489-495.
26. Robertson T.E., Mann H.J., Hyzy R., Rogers A., Douglas I., Waxman A.B., Weinert C., Alapat P., Guntupalli K.K., Buchman T.G. Multicenter implementation of a consensus-developed, evidence-based, spontaneous breathing trial protocol. Critical Care Medicine 2008, 36(10):2753-2762.
27. Burykin A., Buchman T.G. Cardiorespiratory dynamics during transitions between mechanical and spontaneous ventilation in intensive care. Complexity 2008, 13(6):40-59.
28. Lu Y., Burykin A., Deem M.W., Buchman T.G. Predicting clinical physiology: a Markov chain model of heart rate recovery after spontaneous breathing trials in mechanically ventilated patients. Journal of Critical Care 2009, 24(3):347-361.
29. Kelley S.D. Monitoring Consciousness During Anesthesia & Sedation. A Clinician's Guide to the Bispectral Index 2003, Aspect Medical Systems, Newton, MA.
30. Jasper H.H. The ten-twenty electrode system of the International Federation (Appendix to report to Committee on Clinical Examination in EEG). Electroencephalography Clinical Neurophysiology 1958, 10:371-375.
31. Moody G.B., Mark R.G. The MIT-BIH arrhythmia database on CD-ROM and software for use with it. Proceedings of Computers in Cardiology 1990.
32. Ichimaru Y., Moody G.B. Development of the polysomnographic database on CD-ROM. Psychiatry and Clinical Neurosciences 1999, 53(2):175-177.
33. Penzel T., Kesper K., Paiva T., Mayer G., Zulley J. The European neurological network database and sleep atlas. IEEE Engineering in Medicine and Biology Magazine 2001, 20(3):63-69.
34. Klosch G., Kemp B., Penzel T., Schlogl A., Rappelsberger P., Trenker E., Gruber G., Zeitlhofer J., Saletu B., Herrmann W.M., Himanen S.L., Kunz D., Barbanoj M.J., Roschke J., Varri A., Dorffner G. The SIESTA project polygraphic and clinical database. IEEE Engineering in Medicine and Biology Magazine 2001, 20(3):51-57.
35. Bell G., Hey T., Szalay A. Beyond the data deluge. Science 2009, 323(5919):1297-1298.
36. Shu J., Clifford G.D., Long W.J., Moody G.B., Szolovits P., Mark R.G. An open-source, interactive Java-based system for rapid encoding of significant events in the ICU using the unified medical language system. Computers in Cardiology 2004.
37. Abdala O.T, Clifford G.D., Saeed M., Reisner A., Moody G., Henry I., Mark R.G. The annotation station: an open-source technology for annotating large biomedical databases. Computers in Cardiology 2004.
38. Neamatullah I., Douglass M., Lehman L.-w., Reisner A., Villarroel M., Long W., Szolovits P., Moody G., Mark R., Clifford G. Automated de-identification of free-text medical records. BMC Medical Informatics and Decision Making 2008, 8(1):32.
39. Siebig S., Kuhls S., Imhoff M., Langgartner J., Reng M., Scholmerich J., Gather U., Wrede C.E. Collection of annotated data in a clinical validation study for alarm algorithms in intensive care-a methodologic framework. Journal of Critical Care 2010, 25(1):128-135.
40. Hopf H.W. Molecular diagnostics of injury and repair responses in critical illness: what is the future of " monitoring" in the intensive care unit?. Critical Care Medicine 2003, 31(8 Suppl.):S518-S523.
41. Polpitiya A.D., McDunn J.E., Burykin A., Ghosh B.K., Cobb J.P. Using systems biology to simplify complex disease: immune cartography. Critical Care Medicine 2009, 37(1 Suppl.):S16-21.
42. McDunn J.E., Husain K.D., Polpitiya A.D., Burykin A., Ruan J., Li Q., Schierding W., Lin N., Dixon D., Zhang W., Coopersmith C.M., Dunne W.M., Colonna M., Ghosh B.K., Cobb J.P. Plasticity of the systemic inflammatory response to acute infection during critical illness: development of the riboleukogram. PLoS ONE 2008, 3(2):e1564.
43. A. Burykin, T. Peck, V. Krejci, A. Vannucci, I. Kangrga, T.G. Buchman, Toward optimal display of physiologic status in critical care: I. Recreating bedside displays from archived physiologic data. Journal of Critical Care, doi:10.1016/j.jcrc.2010.06.013.