-
1
-
-
34548529079
-
Structural basis of DNA replication origin recognition by an ORC protein
-
Gaudier, M., Schuwirth, B.S., Westcott, S.L. and Wigley, D.B. (2007) Structural basis of DNA replication origin recognition by an ORC protein. Science, 317, 1213-1216.
-
(2007)
Science
, vol.317
, pp. 1213-1216
-
-
Gaudier, M.1
Schuwirth, B.S.2
Westcott, S.L.3
Wigley, D.B.4
-
2
-
-
0037123602
-
Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
-
DOI 10.1126/science.1069595
-
Murakami, K.S., Matsuda, S., Campbell, E.A., Muzzin, O. and Darst, S.A. (2002) Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science, 296, 1285-1290. (Pubitemid 34522778)
-
(2002)
Science
, vol.296
, Issue.5571
, pp. 1285-1290
-
-
Murakami, K.S.1
Masuda, S.2
Campbell, E.A.3
Muzzin, O.4
Darst, S.A.5
-
3
-
-
0025126606
-
NMR studies on the binding of antitumor drug nogalamycin to DNA hexamer d(CGTACG)
-
Robinson, H., Liaw, Y., van der Marel, G.A., van Boom, J.H. and Wang, A.H.-J. (1990) NMR studies on the binding of antitumor drug nogalamycin to DNA hexamer d(CGTACG). Nucleic Acids Res., 18, 4851-4858.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 4851-4858
-
-
Robinson, H.1
Liaw, Y.2
Van Der Marel, G.A.3
Van Boom, J.H.4
Wang, A.H.-J.5
-
4
-
-
0023256126
-
A single mode of DNA base-pair opening drives imino proton exchange
-
DOI 10.1038/328089a0
-
Gueron, M., Kochoyan, M. and Leroy, J.L. (1987) A single mode of DNA base-pair opening drives imino proton exchange. Nature, 328, 89-92. (Pubitemid 17103590)
-
(1987)
Nature
, vol.328
, Issue.6125
, pp. 89-92
-
-
Gueron, M.1
Kochoyan, M.2
Leroy, J.-L.3
-
5
-
-
0033548682
-
High base pair opening rates in tracts of GC base pairs
-
Dornberger, U., Leijon, M. and Fritzsche, H. (1999) High base pair opening rates in tracts of GC base pairs. J. Biol. Chem., 274, 6957-6962.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 6957-6962
-
-
Dornberger, U.1
Leijon, M.2
Fritzsche, H.3
-
6
-
-
0016633445
-
Melting and premelting phenomenon in DNA by laser Raman scattering
-
Erfurth, S.C. and Peticolas, W.L. (1975) Melting and premelting phenomenon in DNA by laser Raman scattering. Biopolymers, 14, 247-264.
-
(1975)
Biopolymers
, vol.14
, pp. 247-264
-
-
Erfurth, S.C.1
Peticolas, W.L.2
-
7
-
-
0025333673
-
Physical studies of DNA premelting equilibria in duplexes with and without homo dA·dT tracts: Correlations with DNA bending
-
DOI 10.1021/bi00478a008
-
Chan, S.S., Breslauer, K.J., Hogan, M.E., Kessler, D.J., Austin, R.H., Ojemann, J., Passner, J.M. and Wiles, N.C. (1990) Physical studies of DNA premelting equilibria in duplexes with and without homo dA.dT tracts: correlations with DNA bending. Biochemistry, 29, 6161-6171. (Pubitemid 20222230)
-
(1990)
Biochemistry
, vol.29
, Issue.26
, pp. 6161-6171
-
-
Chan, S.S.1
Breslauer, K.J.2
Hogan, M.E.3
Kessler, D.J.4
Austin, R.H.5
Ojemann, J.6
Passner, J.M.7
Wiles, N.C.8
-
8
-
-
0027490778
-
5 tracts
-
DOI 10.1021/bi00095a005
-
Chan, S.S., Breslauer, K.J., Austin, R.H. and Hogan, M.E. (1993) Thermodynamics and premelting conformational changes of phased (dA)5 tracts. Biochemistry, 32, 11776-11784. (Pubitemid 23344701)
-
(1993)
Biochemistry
, vol.32
, Issue.44
, pp. 11776-11784
-
-
Chan, S.S.1
Breslauer, K.J.2
Austin, R.H.3
Hogan, M.E.4
-
9
-
-
0036712053
-
Determination of base and backbone contributions to the thermodynamics of premelting and melting transitions in B DNA
-
Movileanu, L., Benevides, J.M. and Thomas, G.J. Jr (2002) Determination of base and backbone contributions to the thermodynamics of premelting and melting transitions in B DNA. Nucleic Acids Res., 30, 3767-3777. (Pubitemid 35012449)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.17
, pp. 3767-3777
-
-
Movileanu, L.1
Benevides, J.M.2
Thomas Jr., G.J.3
-
10
-
-
5444272087
-
Effects of duplex stability on charge transfer efficiency within DNA
-
Douki, T., Ravanat, J.-L., Angelov, D., Wagner, J.R. and Cadet, J. (2004) Effects of duplex stability on charge transfer efficiency within DNA. Top Curr. Chem., 236, 1-25.
-
(2004)
Top Curr. Chem.
, vol.236
, pp. 1-25
-
-
Douki, T.1
Ravanat, J.-L.2
Angelov, D.3
Wagner, J.R.4
Cadet, J.5
-
11
-
-
0026080444
-
Comparison of the effects of high-power UV-laser pulses and ionizing radiation on nucleic acids and related compounds
-
Angelov, D., Berger, M., Cadet, J., Getoff, N., Keskinova, E. and Solar, W. (1991) Comparison of the effects of high-power UV-laser pulses and ionizing radiation on nucleic acids and related compounds. Radiat. Phys. Chem., 37, 717-727.
-
(1991)
Radiat. Phys. Chem.
, vol.37
, pp. 717-727
-
-
Angelov, D.1
Berger, M.2
Cadet, J.3
Getoff, N.4
Keskinova, E.5
Solar, W.6
-
12
-
-
0030965894
-
Influence of the local helical conformation on the guanine modifications generated from one-electron DNA oxidation
-
DOI 10.1021/bi962761d
-
Spassky, A. and Angelov, D. (1997) Influence of the local helical conformation on the guanine modifications generated from one-electron DNA oxidation. Biochemistry, 36, 6571-6576. (Pubitemid 27242314)
-
(1997)
Biochemistry
, vol.36
, Issue.22
, pp. 6571-6576
-
-
Spassky, A.1
Angelov, D.2
-
13
-
-
0035930027
-
UV laser photolysis of DNA: Effect of duplex stability on charge-transfer efficiency
-
DOI 10.1021/ja016426a
-
Douki, T., Angelov, D. and Cadet, J. (2001) UV laser photolysis of DNA: effect of duplex stability on charge-transfer efficiency. J. Am. Chem. Soc., 123, 11360-11366. (Pubitemid 33070593)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.46
, pp. 11360-11366
-
-
Douki, T.1
Angelov, D.2
Cadet, J.3
-
14
-
-
22144434798
-
Origin of the heterogeneous distribution of the yield of guanyl radical in UV laser photolyzed DNA
-
DOI 10.1529/biophysj.104.049015
-
Angelov, D., Beylot, B. and Spassky, A. (2005) Origin of the heterogeneous distribution of the yield of guanyl radical in UV laser photolyzed DNA. Biophys. J., 88, 2766-2778. (Pubitemid 40976143)
-
(2005)
Biophysical Journal
, vol.88
, Issue.4
, pp. 2766-2778
-
-
Angelov, D.1
Beylot, B.2
Spassky, A.3
-
15
-
-
0036397870
-
Temperature-dependence of UV laser one-electron oxidative guanine modifications as a probe of local stacking fluctuations and conformational transitions
-
DOI 10.1016/S0022-2836(02)00878-1
-
Spassky, A. and Angelov, D. (2002) Temperature-dependence of UV laser one-electron oxidative guanine modifications as a probe of local stacking fluctuations and conformational transitions. J. Mol. Biol., 323, 9-15. (Pubitemid 35168476)
-
(2002)
Journal of Molecular Biology
, vol.323
, Issue.1
, pp. 9-15
-
-
Spassky, A.1
Angelov, D.2
-
16
-
-
77958068669
-
Direct measurement of the dynamics of hole hopping in extended DNA G-Tracts An unbiased random walk
-
Mickley Conron, S.M., Thazhathveetil, A.K., Wasielewski, M.R., Burin, A.L. and Lewis, F.D. (2010) Direct measurement of the dynamics of hole hopping in extended DNA G-Tracts. An unbiased random walk. J. Am. Chem. Soc., 132, 14388-14390.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 14388-14390
-
-
Mickley Conron, S.M.1
Thazhathveetil, A.K.2
Wasielewski, M.R.3
Burin, A.L.4
Lewis, F.D.5
-
17
-
-
33846969882
-
A topological mechanism for TRF2-enhanced strand invasion
-
Amiard, S., Doudeau, M., Pinte, S., Poulet, A., Lenain, C., Faivre-Moskalenko, C., Angelov, D., Hug, N., Vindigni, A., Bouvet, P. et al. (2007) A topological mechanism for TRF2-enhanced strand invasion. Nat. Strut. Mol. Biol., 14, 147-154.
-
(2007)
Nat. Strut. Mol. Biol.
, vol.14
, pp. 147-154
-
-
Amiard, S.1
Doudeau, M.2
Pinte, S.3
Poulet, A.4
Lenain, C.5
Faivre-Moskalenko, C.6
Angelov, D.7
Hug, N.8
Vindigni, A.9
Bouvet, P.10
-
18
-
-
0041620271
-
Regulatory sequence analysis tools
-
van Helden, J. (2003) Regulatory sequence analysis tools. Nucleic Acids Res., 31, 3593-3596.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3593-3596
-
-
Van Helden, J.1
-
19
-
-
33748320827
-
Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536
-
DOI 10.1111/j.1365-2958.2006.05255.x
-
Hochhut, B., Wilde, C., Balling, G., Middendorf, B., Dobrindt, U., Brzuszkiewicz, E., Gottschalk, G., Carniel, E. and Hacker, J. (2006) Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536. Mol. Microbiol., 61, 584-595. (Pubitemid 44324086)
-
(2006)
Molecular Microbiology
, vol.61
, Issue.3
, pp. 584-595
-
-
Hochhut, B.1
Wilde, C.2
Balling, G.3
Middendorf, B.4
Dobrindt, U.5
Brzuszkiewicz, E.6
Gottschalk, G.7
Carniel, E.8
Hacker, J.9
-
20
-
-
0032542757
-
Complex local dynamics in DNA on the picosecond and nanosecond time scales
-
Brauns, E.B., Murphy, C.J. and Berg, M.A. (1998) Complex local dynamics in DNA on the picosecond and nanosecond time scales. J. Am. Chem. Soc., 120, 2449-2456.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 2449-2456
-
-
Brauns, E.B.1
Murphy, C.J.2
Berg, M.A.3
-
21
-
-
0037154982
-
A unified theory of gene expression
-
DOI 10.1016/S0092-8674(02)00655-4
-
Orphanides, G. and Reinberg, D. (2002) A unified theory of gene expression. Cell, 108, 439-451. (Pubitemid 34260870)
-
(2002)
Cell
, vol.108
, Issue.4
, pp. 439-451
-
-
Orphanides, G.1
Reinberg, D.2
-
22
-
-
0026540587
-
Calculated enhancement of open base pair probability downstream of a (TATA)2 box
-
Beger, R. and Prohofsky, E.W. (1992) Calculated enhancement of open base pair probability downstream of a (TATA)2 box. Biophys. J., 61, 58-62.
-
(1992)
Biophys. J.
, vol.61
, pp. 58-62
-
-
Beger, R.1
Prohofsky, E.W.2
-
23
-
-
34447522202
-
New problems in RNA polymerase II transcription initiation: Matching the diversity of core promoters with a variety of promoter recognition factors
-
DOI 10.1074/jbc.R700012200
-
Muller, F., Demeny, M.A. and Tora, L. (2007) New problems in RNA polymerase II transcription initiation: matching the diversity of core promoters with a variety of promoter recognition factors. J. Biol. Chem., 20, 14685-14689. (Pubitemid 47093322)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.20
, pp. 14685-14689
-
-
Muller, F.1
Demeny, M.A.2
Tora, L.3
-
24
-
-
0019120052
-
Promoter sequences of eukaryotic protein-coding genes
-
Corden, J., Wasylyk, B., Buchwalder, A., Sassone-Corsi, P., Kedinger, C. and Chambon, P. (1980) Promoter sequences of eukaryotic protein-coding genes. Science, 209, 1405-1414.
-
(1980)
Science
, vol.209
, pp. 1405-1414
-
-
Corden, J.1
Wasylyk, B.2
Buchwalder, A.3
Sassone-Corsi, P.4
Kedinger, C.5
Chambon, P.6
-
25
-
-
34249098071
-
Mammalian RNA polymerase II core promoters: Insights from genome-wide studies
-
DOI 10.1038/nrg2026, PII NRG2026
-
Sandelin, A., Carninci, P., Lenhard, B., Ponjavic, J., Hayashizaki, Y. and Hume, D.A. (2007) Mammalian RNA polymerase II core promoters: insights from genome-wide studies. Nature Rev. Genet., 8, 424-436. (Pubitemid 46789243)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.6
, pp. 424-436
-
-
Sandelin, A.1
Carninci, P.2
Lenhard, B.3
Ponjavic, J.4
Hayashizaki, Y.5
Hume, D.A.6
-
26
-
-
58849087205
-
Transcription initiation by mix and match elements: Flexibility for polymerase binding to bacterial promoters
-
Hook-Barnard, I.G. and Hinton, D.M. (2007) Transcription initiation by mix and match elements: Flexibility for polymerase binding to bacterial promoters. Gene Regul. Syst. Biol., 275-293.
-
(2007)
Gene Regul. Syst. Biol.
, pp. 275-293
-
-
Hook-Barnard, I.G.1
Hinton, D.M.2
-
27
-
-
58849125430
-
The promoter spacer influences transcription initiation via s70 region 1.1 of Escherichia coli RNA polymerase
-
Hook-Barnard, I.G. and Hinton, D.M. (2009) The promoter spacer influences transcription initiation via s70 region 1.1 of Escherichia coli RNA polymerase. Proc. Natl Acad. Sci. USA, 106, 737-742.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 737-742
-
-
Hook-Barnard, I.G.1
Hinton, D.M.2
-
28
-
-
0027761839
-
A third recognition element in bacterial promoters: DNA binding by the α subunit of RNA polymerase
-
Ross, W., Gosink, K.K., Salomon, J., Igarashi, K., Zou, C., Ishihama, A., Severinov, K. and Gourse, R.L. (1993) A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase. Science, 262, 1407-1413. (Pubitemid 24035059)
-
(1993)
Science
, vol.262
, Issue.5138
, pp. 1407-1413
-
-
Ross, W.1
Gosink, K.K.2
Salomon, J.3
Igarashi, K.4
Zou, C.5
Ishihama, A.6
Severinov, K.7
Gourse, R.L.8
-
29
-
-
2342447166
-
lac promoter hyperactive and cAMP receptor protein-independent
-
DOI 10.1073/pnas.0401929101
-
Liu, M., Tolstorukov, M., Zhurkin, V., Garges, S. and Adhya, S. (2004) A mutant spacer sequence between-35 and-10 elements makes the Plac promoter hyperactive and cAMP receptor protein-independent. Proc. Natl Acad. Sci. USA, 101, 6911-6916. (Pubitemid 38596417)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.18
, pp. 6911-6916
-
-
Liu, M.1
Tolstorukov, M.2
Zhurkin, V.3
Garges, S.4
Adhya, S.5
-
30
-
-
0031860393
-
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL
-
Heinemeyer, T., Wingender, E. and Reuter, I. (1998) Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res., 26, 364-370.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 364-370
-
-
Heinemeyer, T.1
Wingender, E.2
Reuter, I.3
|