-
1
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
G.D. Bader, and C.W.V. Hogue An automated method for finding molecular complexes in large protein interaction networks BMC Bioinformatics 4 2003 2
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.V.2
-
2
-
-
79960184518
-
-
August
-
Batagelj V, Mrvar A. 〈 http://vlado.fmf.uni-lj.si/pub/networks/ pajek/ 〉, August 2009.
-
(2009)
-
-
Batagelj, V.1
Mrvar, A.2
-
4
-
-
0002590155
-
The maximum clique problem
-
D.Z. Du, P.M. Pardalos, Kluwer Dordrecht
-
I.M. Bomze, M. Budinich, P.M. Pardalos, and M. Pelillo The maximum clique problem D.Z. Du, P.M. Pardalos, Handbook of combinatorial optimization (suppl. vol. A) 1999 Kluwer Dordrecht 1 74
-
(1999)
Handbook of Combinatorial Optimization
, vol.1
, Issue.SUPPL.
, pp. 1-74
-
-
Bomze, I.M.1
Budinich, M.2
Pardalos, P.M.3
Pelillo, M.4
-
5
-
-
0018456690
-
New methods to color the vertices of a graph
-
DOI 10.1145/359094.359101
-
D. Brélaz New methods to color the vertices of a graph Communications of the ACM 22 4 1979 251 256 (Pubitemid 9452014)
-
(1979)
Commun ACM
, vol.22
, Issue.4
, pp. 251-256
-
-
Brelaz, D.1
-
6
-
-
33751255087
-
Evaluation of clustering algorithms for proteinprotein interaction networks
-
S. Brohée, and J. van Helden Evaluation of clustering algorithms for proteinprotein interaction networks BMC Bioinformatics 7 2006 488
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 488
-
-
Brohée, S.1
Van Helden, J.2
-
7
-
-
4043062215
-
Criminal groups and transnational illegal markets
-
G. Bruinsma, and W. Bernasco Criminal groups and transnational illegal markets Crime, Law & Social Change 41 2004 79 94
-
(2004)
Crime, Law & Social Change
, vol.41
, pp. 79-94
-
-
Bruinsma, G.1
Bernasco, W.2
-
8
-
-
33748704060
-
Clique-detection models in computational biochemistry and genomics
-
DOI 10.1016/j.ejor.2005.05.026, PII S0377221705005266
-
S. Butenko, and W.E. Wilhelm Clique-detection models in computational biochemistry and genomics European Journal of Operational Research 173 2006 1 17 (Pubitemid 44389583)
-
(2006)
European Journal of Operational Research
, vol.173
, Issue.1
, pp. 1-17
-
-
Butenko, S.1
Wilhelm, W.E.2
-
9
-
-
1842451398
-
1001 Optimal PDB structure alignments: Integer programming methods for finding the maximum contact map overlap
-
DOI 10.1089/106652704773416876
-
A. Caprara, R. Carr, S. Istrail, G. Lancia, and B. Walenz 1001 optimal PDB structure alignments: integer programming methods for finding the maximum contact map overlap Journal of Computational Biology 11 2004 27 52 (Pubitemid 38429362)
-
(2004)
Journal of Computational Biology
, vol.11
, Issue.1
, pp. 27-52
-
-
Caprara, A.1
Carr, R.2
Istrail, S.3
Lancia, G.4
Walenz, B.5
-
10
-
-
0036252735
-
Studying Complex Discursive Systems Centering Resonance Analysis of Communication
-
DOI 10.1093/hcr/28.2.157
-
S. Corman, T. Kuhn, R. McPhee, and K. Dooney Studying complex discursive systems: centering resonance analysis of organizational communication Human Communication Research 28 2 2002 157 206 (Pubitemid 37496230)
-
(2002)
Human Communication Research
, vol.28
, Issue.2
, pp. 157-206
-
-
Corman, S.R.1
Kuhn, T.2
Mcphee, R.D.3
Dooley, K.J.4
-
12
-
-
0034703397
-
Identification and characterization of an ataxia-1-interacting protein: A1Up, a ubiquitin-like nuclear protein
-
J.D. Davidson, B. Riley, E.N. Burright, and L.A. Duvick Identification and characterization of an ataxia-1-interacting protein: A1Up, a ubiquitin-like nuclear protein Human Molecular Genetics 9 15 2000 2305 2312
-
(2000)
Human Molecular Genetics
, vol.9
, Issue.15
, pp. 2305-2312
-
-
Davidson, J.D.1
Riley, B.2
Burright, E.N.3
Duvick, L.A.4
-
14
-
-
0029290085
-
Fixed parameter tractability and completeness II: Completeness for W[1]
-
R.G. Downey, and M.R. Fellows Fixed parameter tractability and completeness II: completeness for W[1] Theoretical Computer Science A 141 1995 109 131
-
(1995)
Theoretical Computer Science A
, vol.141
, pp. 109-131
-
-
Downey, R.G.1
Fellows, M.R.2
-
15
-
-
0034592749
-
Efficient identification of web communities
-
ACM Press Boston, MA, USA
-
G.W. Flake, S. Lawrence, and C.L. Giles Efficient identification of web communities Proceedings of the sixth international conference on knowledge discovery and data mining (ACM SIGKDD-2000) 2000 ACM Press Boston, MA, USA 150 160
-
(2000)
Proceedings of the Sixth International Conference on Knowledge Discovery and Data Mining (ACM SIGKDD-2000)
, pp. 150-160
-
-
Flake, G.W.1
Lawrence, S.2
Giles, C.L.3
-
16
-
-
44149084436
-
A sequential elimination algorithm for computing bounds on the clique number of a graph
-
B. Gendron, A. Hertz, and P. St-Louis A sequential elimination algorithm for computing bounds on the clique number of a graph Discrete Optimization 5 3 2008 615 628
-
(2008)
Discrete Optimization
, vol.5
, Issue.3
, pp. 615-628
-
-
Gendron, B.1
Hertz, A.2
St-Louis, P.3
-
17
-
-
58449085212
-
Simple ingredients leading to very efficient heuristics for the maximum clique problem
-
A. Grosso, M. Locatelli, and W. Pullan Simple ingredients leading to very efficient heuristics for the maximum clique problem Journal of Heuristics 14 6 2008 587 612
-
(2008)
Journal of Heuristics
, vol.14
, Issue.6
, pp. 587-612
-
-
Grosso, A.1
Locatelli, M.2
Pullan, W.3
-
18
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
DOI 10.1038/nature02555
-
J.D. Han, N. Bertin, T. Hao, and D.S. Goldberg Evidence for dynamically organized modularity in the yeast proteinprotein interaction network Nature 430 2004 88 93 (Pubitemid 38915230)
-
(2004)
Nature
, vol.430
, Issue.6995
, pp. 88-93
-
-
Han, J.-D.J.1
Berlin, N.2
Hao, T.3
Goldberg, D.S.4
Berriz, G.F.5
Zhang, L.V.6
Dupuy, D.7
Walhout, A.J.M.8
Cusick, M.E.9
Roth, F.P.10
Vidal, M.11
-
20
-
-
0037191696
-
Web document clustering using hyperlink structures
-
DOI 10.1016/S0167-9473(02)00070-1, PII S0167947302000701
-
X. He, H. Zha, C. Ding, and H. Simon Web document clustering using hyperlink structures Computational Statistics & Data Analysis 41 2002 19 45 (Pubitemid 35358593)
-
(2002)
Computational Statistics and Data Analysis
, vol.41
, Issue.1
, pp. 19-45
-
-
He, X.1
Zha, H.2
Ding, C.H.Q.3
Simon, H.D.4
-
22
-
-
51849092675
-
Enumerating isolated cliques in synthetic and financial networks
-
Springer-Verlag Berlin, Heidelberg
-
F. Hüffner, C. Komusiewicz, H. Moser, and R. Niedermeier Enumerating isolated cliques in synthetic and financial networks Lecture notes in computer science vol. 5168 2008 Springer-Verlag Berlin, Heidelberg 405 416
-
(2008)
Lecture Notes in Computer Science
, vol.5168
, pp. 405-416
-
-
Hüffner, F.1
Komusiewicz, C.2
Moser, H.3
Niedermeier, R.4
-
24
-
-
76649097686
-
Enumeration of isolated cliques and pseudo-cliques
-
Article 40
-
H. Ito, and K. Iwama Enumeration of isolated cliques and pseudo-cliques ACM Transactions on Algorithms 5 4 2009 Article 40
-
(2009)
ACM Transactions on Algorithms
, vol.5
, Issue.4
-
-
Ito, H.1
Iwama, K.2
-
25
-
-
27144509327
-
Linear-time enumeration of isolated cliques
-
Algorithms - ESA 2005: 13th Annual European Symposium. Proceedings
-
H. Ito, K. Iwama, and T. Osumi Linear-time enumeration of isolated cliques Lecture notes in computer science vol. 3669 2005 Springer-Verlag Berlin, Heidelberg 119 130 (Pubitemid 41491523)
-
(2005)
Lecture Notes in Computer Science
, vol.3669
, pp. 119-130
-
-
Ito, H.1
Iwama, K.2
Osumi, T.3
-
27
-
-
0003037529
-
Reducibility among combinatorial problems
-
R.E. Miller, J.W. Thatcher, Plenum Press New York
-
R.M. Karp Reducibility among combinatorial problems R.E. Miller, J.W. Thatcher, Complexity of computer computations 1972 Plenum Press New York 85 103
-
(1972)
Complexity of Computer Computations
, pp. 85-103
-
-
Karp, R.M.1
-
30
-
-
33646687963
-
A Protein-Protein Interaction Network for Human Inherited Ataxias and Disorders of Purkinje Cell Degeneration
-
DOI 10.1016/j.cell.2006.03.032, PII S0092867406004399
-
J. Lim, T. Hao, C. Shaw, and A.J. Patel A proteinprotein interaction network for Human inherited ataxias and disorders of Purkinje cell degeneration Cell 125 2006 801 814 (Pubitemid 43732348)
-
(2006)
Cell
, vol.125
, Issue.4
, pp. 801-814
-
-
Lim, J.1
Hao, T.2
Shaw, C.3
Patel, A.J.4
Szabo, G.5
Rual, J.-F.6
Fisk, C.J.7
Li, N.8
Smolyar, A.9
Hill, D.E.10
Barabasi, A.-L.11
Vidal, M.12
Zoghbi, H.Y.13
-
31
-
-
33646848903
-
A convex quadratic characterization of the lovász theta number
-
DOI 10.1137/S0895480104429181
-
C.J. Luz, and A. Schrijver A convex quadratic characterization of the Lovász theta number SIAM Journal on Discrete Mathematics 19 2 2005 382 387 (Pubitemid 43774477)
-
(2005)
SIAM Journal on Discrete Mathematics
, vol.19
, Issue.2
, pp. 382-387
-
-
Luz, C.J.1
Schrijver, A.2
-
32
-
-
70649099039
-
Extended and discretized formulations for the maximum clique problem
-
P. Martins Extended and discretized formulations for the maximum clique problem Computers & Operations Research 37 2010 1348 1358
-
(2010)
Computers & Operations Research
, vol.37
, pp. 1348-1358
-
-
Martins, P.1
-
33
-
-
55749096609
-
Phylogenetic distances are encoded in networks of interacting pathways
-
A. Mazurie, D. Bonchev, B. Schwikowski, and A. Buck Phylogenetic distances are encoded in networks of interacting pathways Bioinformatics 24 22 2008 2579 2585
-
(2008)
Bioinformatics
, vol.24
, Issue.22
, pp. 2579-2585
-
-
Mazurie, A.1
Bonchev, D.2
Schwikowski, B.3
Buck, A.4
-
35
-
-
84867997005
-
A fast algorithm for the maximum clique problem
-
P.R.J. Östergård A fast algorithm for the maximum clique problem Discrete Applied Mathematics 120 2002 197 207
-
(2002)
Discrete Applied Mathematics
, vol.120
, pp. 197-207
-
-
Östergård, P.R.J.1
-
36
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
DOI 10.1038/nature04209, PII N04209
-
J.-F. Rual, K. Venkatesan, T. Hao, and T. Hirozane-Kishikawa Towards a proteome-scale map of the human proteinprotein interaction network Nature 437 2005 1173 1178 (Pubitemid 41509356)
-
(2005)
Nature
, vol.437
, Issue.7062
, pp. 1173-1178
-
-
Rual, J.-F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
Klitgord, N.11
Simon, C.12
Boxem, M.13
Milstein, S.14
Rosenberg, J.15
Goldberg, D.S.16
Zhang, L.V.17
Wong, S.L.18
Franklin, G.19
Li, S.20
Albala, J.S.21
Lim, J.22
Fraughton, C.23
Llamosas, E.24
Cevik, S.25
Bex, C.26
Lamesch, P.27
Sikorski, R.S.28
Vandenhaute, J.29
Zoghbi, H.Y.30
Smolyar, A.31
Bosak, S.32
Sequerra, R.33
Doucette-Stamm, L.34
Cusick, M.E.35
Hill, D.E.36
Roth, F.P.37
Vidal, M.38
more..
-
37
-
-
25144463996
-
Optimal protein structure alignment using maximum cliques
-
DOI 10.1287/opre.1040.0189
-
D.M. Strickland, E. Barnes, and J.S. Sokol Optimal protein structure alignment using maximum cliques Operations Research 53 3 2005 389 402 (Pubitemid 41342344)
-
(2005)
Operations Research
, vol.53
, Issue.3
, pp. 389-402
-
-
Strickland, D.M.1
Barnes, E.2
Sokol, J.S.3
-
38
-
-
0030753950
-
Differential expression of FMR1, FXR1 and FXR2 proteins in human brain and testis
-
DOI 10.1093/hmg/6.8.1315
-
F. Tamanini, R. Willemsen, L. van Unen, and C. Bontekoe Differential expression of FMR1, FXR1 and FXR2 proteins in human brain and testis Human Molecular Genetics 6 8 1997 1315 1322 (Pubitemid 27351072)
-
(1997)
Human Molecular Genetics
, vol.6
, Issue.8
, pp. 1315-1322
-
-
Tamanini, F.1
Willemsen, R.2
Van Unen, L.3
Bontekoe, C.4
Galjaard, H.5
Oostra, B.A.6
Hoogeveen, A.T.7
-
39
-
-
33845292891
-
An efficient branch-and-bound algorithm for finding a maximum clique with computational experiments
-
DOI 10.1007/s10898-006-9039-7
-
E. Tomita, and T. Kameda An efficient branch-and-bound algorithm for finding a maximum clique with computational experiments Journal on Global Optimization 37 2007 95 111 (Pubitemid 44876770)
-
(2007)
Journal of Global Optimization
, vol.37
, Issue.1
, pp. 95-111
-
-
Tomita, E.1
Kameda, T.2
-
40
-
-
33744822763
-
Yeast protein interactome topology provides framework for coordinated-functionality
-
DOI 10.1093/nar/gkl325
-
A.X.C.N. Valente, and M.E. Cusick Yeast protein interactome topology provides framework for coordinated-functionality Nucleic Acids Research 34 9 2006 2812 2819 (Pubitemid 43985642)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.9
, pp. 2812-2819
-
-
Valente, A.X.C.N.1
Cusick, M.E.2
-
41
-
-
79960185305
-
-
accessed in June
-
〈 http://www.yeastgenome.org/ 〉, accessed in June 2010.
-
(2010)
-
-
-
42
-
-
79960197526
-
-
accessed in June
-
〈 http://www.ncbi.nlm.nih.gov/pubmed/ 〉, accessed in June 2010.
-
(2010)
-
-
-
43
-
-
79960171269
-
-
accessed in June
-
〈 http://www.genecards.org/ 〉, accessed in June 2010.
-
(2010)
-
-
-
44
-
-
79960198331
-
-
accessed in June
-
〈 http://www.uniprot.org/uniprot/ 〉, accessed in June 2010.
-
(2010)
-
-
|