PH-Jump overshooting

Journal of Physical Chemistry Letters

Volumn 2, Issue 13, 2011, Pages 1607-1611

  Donten, Mateusz L ^a   Hamm, Peter ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ACID BASE; CARBOXYLATE GROUPS; HYDROXYL ION; PH-JUMP; PROTONATED; TIME-SCALES;

CARBOXYLATION;

EID: 79960190393     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz200610n     Document Type: Article

References (36)

1. Atkins, P. W. Physical Chemistry; Oxford University Press: Oxford, U.K., 1989.
2. - In Pure Liquid Water J. Phys. Chem. 1985, 89, 2605-2612
3. Rice, S. A. Diffusion-Limited Reactions; Bamford, C. H.,; Tipper, C. F. H.; Compton, R. G., Eds.; Comprehensive Chemical Kinetics 25; Elsevier: New York; pp 16-17.
4. Eiden, M. Proton Transfer, Acid-Base Catalysis, and Enzymatic Hydrolysis, Part I: Elementary Processes Angew. Chem., Int. Ed. 1964, 3, 1-19
5. Agmon, M. The Grotthuss Mechanism Chem. Phys. Lett. 1995, 244, 456
6. Mohammed, O. F.; Pines, D.; Dreyer, J.; Pines, E.; Nibbering, E. T. J. Sequential Proton Transfer Through Water Bridges in Acid-Base Reactions Science 2005, 310, 83-86 (Pubitemid 41434539)
7. Mohammed, O. F.; Pines, D.; Nibbering, E. T. J.; Pines, E. Base-Induced Solvent Switches in Acid-Base Reactions Angew. Chem., Int. Ed. 2007, 46, 1458-1461 (Pubitemid 46959996)
8. Siwick, B. J.; Cox, M. J.; Bakker, H. J. Long-Range Proton Transfer in Aqueous Acid-Base Reactions J. Phys. Chem. 2008, 112, 378-389 (Pubitemid 351184611)
9. Cox, M. J.; Bakker, H. J. Parallel Proton Transfer Pathways in Aqueous Acid-Base Reactions J. Chem. Phys. 2008, 126, 174501
10. Cox, M. J.; Timmer, R. L. A.; Bakker, H. J.; Park, S.; Agmon, N. Distance-Dependent Proton Transfer along Water Wires Connecting Acid-Base Pairs J. Phys. Chem. A 2009, 113, 6599-6606
11. Balakrishnan, G.; Weeks, C. L.; Ibrahim, M.; Soldatova, A. V.; Spiro, T. G. Protein Dynamics from Time Resolved UV Raman Spectroscopy Curr. Opin. Struct. Biol. 2008, 18, 623-629
12. Chung, H. S.; Shandiz, A.; Sosnick, T. R.; Tokmakoff, A. Probing the Folding Transition State of Ubiquitin Mutants by Temperature-Jump-Induced Downhill Unfolding Biochemistry 2008, 47, 13870-13877
13. Gutman, M.; Huppert, D.; Pines, E. The pH Jump: A Rapid Modulation of pH of Aqueous Solutions by a Laser Pulse J. Am. Chem. Soc. 1981, 103, 3709-3713
14. Abbruzzetti, S.; Grandi, E.; Viappiani, C.; Bologna, S.; Campanini, B.; Raboni, S.; Bettati, S.; Mozzarelli, A. Kinetics of Acid-Induced Spectral Changes in the GFPmut2 Chromophore J. Am. Chem. Soc. 2005, 127, 626-635 (Pubitemid 40174388)
15. Genosar, L.; Cohen, B.; Huppert, D. Ultrafast Direct Photoacid - Base Reaction J. Phys. Chem. A 2000, 104, 6689-6698
16. Pines, D.; Nibbering, E. T. J.; Pines, E. Relaxation to Equilibrium Following Photoacid Dissociation in Mineral Acids and Buffer Solutions J. Phys.: Condens. Matter 2007, 19, 065134
17. Adamczyk, K.; Premont-Schwarz, M.; Pines, D.; Pines, E.; Nibbering, E. T. J. Real-Time Observation of Carbonic Acid Formation in Aqueous Solution Science 2009, 326, 1690-1694
18. Causgrove, T. P.; Dyer, R. B. Nonequilibrium Protein Folding Dynamics: Laser-Induced pH-Jump Studies of the Helix-Coil Transition Chem. Phys. 2006, 323, 2-10
19. Abbruzzetti, S.; Sottini, S.; Viappiani, C.; Corrie, J. E. T. Acid-Induced Unfolding of Myoglobin Triggered by a Laser pH Jump Method Photochem. Photobiol. Sci. 2006, 5, 621-628 (Pubitemid 43885926)
20. Miksovska, J.; Larsen, R. W. Photothermal Studies of pH Induced Unfolding of Apomyoglobin J. Protein Chem. 2003, 22, 387-394 (Pubitemid 37087800)
21. Abbruzzetti, S.; Viappiani, C.; Small, J. R.; Libertini, L. J.; Small, E. W. Kinetics of Local Helix Formation in Poly- l -glutamic Acid Studied by Time-Resolved Photoacoustics: Neutralization Reactions of Carboxylates in Aqueous Solutions and Their Relevance to the Problem of Protein Folding Biophys. J. 2000, 79, 2714-2721
22. Yam, R.; Nachliel, E.; Gutman, M. Time-Resolved Proton Interaction. Methodology and Kinetic Analysis J. Am. Chem. Soc. 1988, 110, 2636-2640
23. Gutamn, M.; Nachliel, E. Time-Resolved Dynamics of Proton Transfer in Proteinous Systems Annu. Rev. Phys. Chem. 1997, 48, 329-356 (Pubitemid 127443911)
24. Gutman, M.; Nachliei, E.; Gershon, E. Effect of Buffer on Kinetics of Proton Equilibration with a Protonable Group Biochemistry 1985, 24, 2937-2941
25. Gutman, M.; Nachliel, E.; Gershon, E.; Giniger, R.; Pines, E. Ph Jump: Kinetic Analysis and Determination of the Diffiusion-Controlled Rate Constants J. Am. Chem. Soc. 1983, 105, 2210-2216
26. Checover, S.; Nachliel, E.; Dencher, N. A.; Gutman, M. Mechanism of Proton Entry into the Cytoplasmatic Section of the Proton-Conducting Channel of Bactiriorhodopsin Biochemistry 1997, 36, 13919-13928 (Pubitemid 27494900)
27. Pines, E.; Huppert, D. The pH-Jump: A Relaxational Approach J. Phys. Chem. 1983, 87, 4471-4478
28. Laimgruber, S.; Schreier, W. J.; Schrader, T.; Koller, F.; Zinth, W.; Gilch, P. The Photochemistry of o -Nitrobenzaldehyde as Seen by Femtosecond Vibrational Spectroscopy Angew. Chem., Int. Ed. 2005, 44, 7901-7904 (Pubitemid 41811704)
29. Yip, R. W.; Sharma, D. K. The Reactive State in the Photorearrangment of o -Nitrobenzaldehyde Res. Chem. Intermed. 1989, 11, 109-116
30. Donten, M. L.; Hamm, P.; VandeVondele, J. A Consistent Picture of the Proton Release Mechanism of oNBA in Water by Ultrafast Spectroscopy and Ab Initio Molecular Dynamics J. Phys. Chem. B 2011, 115, 1075-1083
31. Covington, A. K.; Paabo, M.; Robinson, R. A.; Bates, R. G. Use of the Glass Electrode in Deuterium Oxide and the Relation between the Standardized pD (paD) Scale and the Operational pH in Heavy Water Anal. Chem. 1968, 40, 700-706
32. Hamm, P.; Kaindl, R. A.; Stenger, J. Noise Suppression in Femtosecond Mid-Infrared Light Sources J. Opt. Lett. 2000, 25, 1798
33. Bredenbeck, J.; Helbing, J.; Hamm, P. Continuous Scanning from Picoseconds to Microseconds in Time Resolved Linear and Nonlinear Spectroscopy Rev. Sci. Instrum. 2004, 75, 4462-4466 (Pubitemid 40001754)
34. 4 in Deuterium Oxide from 5 to 50A and Related Isotope Effects J. Phys. Chem. 1966, 70, 2073-2077
35. Nibbering, E. T. J.; Fidder, H.; Pines, E. Ultrafast Chemistry: Using Time-Resolved Vibrational Spectroscopy for Interrogation of Structural Dynamics Annu. Rev. Phys. Chem. 2005, 56, 337-367 (Pubitemid 41161748)
36. a, and aci -Nitro Decay Rates in Some Substituted o -Nitrobenzaldehydes Photochem. Photobiol. Sci. 2003, 2, 796-800 (Pubitemid 41662968)