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Volumn 27, Issue 14, 2011, Pages 1901-1907

A memory-efficient data structure representing exact-match overlap graphs with application for next-generation DNA assembly

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 79960120736     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr321     Document Type: Article
Times cited : (16)

References (9)
  • 1
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    • Replace suffix trees with enhanced suffix arrays
    • Abouelhoda,M. et al. (2004) Replace suffix trees with enhanced suffix arrays. J. Dis. Algorithm, 2, 53-86.
    • (2004) J. Dis. Algorithm , vol.2 , pp. 53-86
    • Abouelhoda, M.1
  • 3
    • 0026836177 scopus 로고
    • An efficient algorithm for the all pairs suffix-prefix problem
    • Gusfield,D. et al. (1992) An efficient algorithm for the all pairs suffix-prefix problem. Inf. Process. Lett., 41, 181-185.
    • (1992) Inf. Process. Lett. , vol.41 , pp. 181-185
    • Gusfield, D.1
  • 4
    • 0033227559 scopus 로고    scopus 로고
    • Reducing the space requirement of suffix trees
    • Kurtz,S. (1999) Reducing the space requirement of suffix trees. Softw. Pract. Exp., 29, 1149-1171.
    • (1999) Softw. Pract. Exp. , vol.29 , pp. 1149-1171
    • Kurtz, S.1
  • 6
    • 27544497879 scopus 로고    scopus 로고
    • The fragment assembly string graph
    • Myers,E.W. (2005) The fragment assembly string graph. Bioinformatics, 21, 79-85.
    • (2005) Bioinformatics , vol.21 , pp. 79-85
    • Myers, E.W.1
  • 7
    • 71749107914 scopus 로고    scopus 로고
    • Efficient algorithms for the all-pairs suffix-prefix problem and the all-pairs substring-prefix problem
    • Ohlebusch,E. and Gog,S. (2010) Efficient algorithms for the all-pairs suffix-prefix problem and the all-pairs substring-prefix problem. Inf. Process. Lett., 110, 123-128.
    • (2010) Inf. Process. Lett. , vol.110 , pp. 123-128
    • Ohlebusch, E.1    Gog, S.2
  • 8
    • 67449095888 scopus 로고    scopus 로고
    • Genome assembly reborn: recent computational challenges
    • Pop,M. (2009) Genome assembly reborn: recent computational challenges. Brief. Bioinformatics, 10, 354-366.
    • (2009) Brief. Bioinformatics , vol.10 , pp. 354-366
    • Pop, M.1
  • 9
    • 77954238055 scopus 로고    scopus 로고
    • Efficient construction of an assembly string graph using the fm-index
    • Simpson,J.T. and Durbin,R. (2010) Efficient construction of an assembly string graph using the fm-index. Bioinformatics, 26, i367-i373.
    • (2010) Bioinformatics , vol.26
    • Simpson, J.T.1    Durbin, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.