Glycolytic oscillations and limits on robust efficiency

Science

Volumn 333, Issue 6039, 2011, Pages 187-192

  Chandra, Fiona A ^a   Buzi, Gentian ^b   Doyle, John C ^b  

^a California Institute of Technology   (United States)

^b CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; CONTROL SYSTEM; EVOLUTIONARY BIOLOGY; REACTION KINETICS; TRADE-OFF;

AUTOCATALYSIS; CATALYSIS; CHEMICAL REACTION; FEEDBACK SYSTEM; GLYCOLYSIS; GLYCOLYTIC OSCILLATION; OSCILLATION; PRIORITY JOURNAL; PROCESS MODEL; REVIEW; THEORETICAL MODEL; THEORETICAL STUDY;

ADENOSINE MONOPHOSPHATE; ADENOSINE TRIPHOSPHATE; ALLOSTERIC REGULATION; BIOCATALYSIS; FEEDBACK, PHYSIOLOGICAL; GLUCOSE; GLYCOLYSIS; KINETICS; LINEAR MODELS; MODELS, BIOLOGICAL; NAD; NONLINEAR DYNAMICS; PHOSPHOFRUCTOKINASES; PYRUVATE KINASE; SACCHAROMYCES CEREVISIAE; SINGLE-CELL ANALYSIS;

EID: 79960105112     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1200705     Document Type: Review

References (26)

1. M. E. Csete, J. C. Doyle, Science 295, 1664 (2002).
2. These limits are associated with names such as Turing, Gödel, Poincaré, Carnot, Shannon, Bode, Wiener, and Heisenberg and are the foundation for subjects with a vast literature, including textbooks and popular expositions. Unfortunately, integrated treatments are surprisingly lacking. For a recent survey of some dimensions of this problem, see (26).
3. J. C. Doyle, B. A. Francis, A. Tannenbaum, Feedback Control Theory (Macmillan, New York, 1992).
4. K. Astrom, R. M. Murray, Feedback Systems: An Introduction for Scientists and Engineers (Princeton Univ. Press, Princeton, NJ, 2008).
5. A. Ghosh, B. Chance, Biochem. Biophys. Res. Commun. 16, 174 (1964).
6. P. Richard, FEMS Microbiol. Rev. 27, 547 (2003).
7. B. Teusink, B. M. Bakker, H. V. Westerhoff, Biochim. Biophys. Acta 1275, 204 (1996).
8. M. Bier, B. Teusink, B. N. Kholodenko, H. V. Westerhoff, Biophys. Chem. 62, 15 (1996).
9. A. Goldbeter, Biochemical Oscillations and Cellular Rhythms (Cambridge Univ. Press, Cambridge, 1996).
10. E. E. Sel'kov, Eur. J. Biochem. 59, 151 (1975).
11. F. Hynne, S. Danø, P. G. Sørensen, Biophys. Chem. 94, 121 (2001).
12. A. Betz, B. Chance, Arch. Biochem. Biophys. 109, 585 (1965).
13. Y. Termonia, J. Ross, Proc. Natl. Acad. Sci. U.S.A. 78, 2952 (1981).
14. P. H. Richter, J. Ross, Science 211, 715 (1981).
15. B. V. Chernyak, O. Y. Pletjushkina, D. S. Izyumov, K. G. Lyamzaev, A. V. Avetisyan, Biochemistry (Moscow) 70, 240 (2005).
16. The maximum modulus theorem applied to rational functions, such as WS(s), says that on any domain in the complex plane that contains no poles of WS(s), the maximum modulus |WS(s)| is always achieved on the boundary. See (3).
17. I. Lestas, G. Vinnicombe, J. Paulsson, Nature 467, 174 (2010).
18. Materials and methods are available as supporting material on Science Online.
19. A. Ståhlberg et al., BMC Genomics 9, 170 (2008).
20. A. K. Poulsen, M. Ø. Petersen, L. F. Olsen, Biophys. Chem. 125, 275 (2007).
21. P. A. Iglesias, B. P. Ingalls, Control Theory and Systems Biology (MIT Press, Cambridge, MA. 2010).
22. H. Sandberg, J. C. Delvenne, J. C. Doyle, IEEE Trans Auto Control, 56, 293 (2011).
23. N. C. Martins, M. A. Dahleh, J. C. Doyle, IEEE Trans. Automat. Contr. 52, 56 (2007).
24. A. D. Lander, PLoS Biol. 2, e164 (2004).
25. G. Buzi, U. Topcu, J. Doyle, Automatica, 47, 1123 (2011).
26. D. L. Alderson, J. C. Doyle, IEEE Trans Syst. Man Cybernet. Part A Syst. Hum. 40, 839 (2010).