-
1
-
-
19344372271
-
Systems Biology: Its Practice and Challenges
-
Aderem, A.: Systems Biology: Its Practice and Challenges. Cell 121(4), 511-513 (2005)
-
(2005)
Cell
, vol.121
, Issue.4
, pp. 511-513
-
-
Aderem, A.1
-
2
-
-
79958037323
-
Boundedness analysis for open Chemical Reaction Networks with massaction kinetics
-
doi:10.1007/s11047-009-9163-7
-
Angeli, D.: Boundedness analysis for open Chemical Reaction Networks with massaction kinetics. J. Natural Computing (2009), doi:10.1007/s11047-009-9163-7
-
(2009)
J. Natural Computing
-
-
Angeli, D.1
-
3
-
-
34548532883
-
A Petri net approach to the study of persistence in chemical reaction networks
-
Angeli, D., De Leenheer, P., Sontag, E.D.: A Petri net approach to the study of persistence in chemical reaction networks. Mathematical Biosciences 210(2), 598-618 (2007)
-
(2007)
Mathematical Biosciences
, vol.210
, Issue.2
, pp. 598-618
-
-
Angeli, D.1
De Leenheer, P.2
Sontag, E.D.3
-
4
-
-
84941709469
-
Model checking continuous time Markov chains
-
Aziz, A., Sanwal, K., Singhal, V., Brayton, R.: Model checking continuous time Markov chains. ACM Trans. on Computational Logic 1(1) (2000)
-
(2000)
ACM Trans. on Computational Logic
, vol.1
, Issue.1
-
-
Aziz, A.1
Sanwal, K.2
Singhal, V.3
Brayton, R.4
-
5
-
-
0042349303
-
Model checking algorithms for continuous-time Markov chains
-
Baier, C., Haverkort, B., Hermanns, H., Katoen, J.-P.: Model checking algorithms for continuous-time Markov chains. IEEE Trans. on Software Engineering 29(6) (2003)
-
(2003)
IEEE Trans. on Software Engineering
, vol.29
, Issue.6
-
-
Baier, C.1
Haverkort, B.2
Hermanns, H.3
Katoen, J.-P.4
-
6
-
-
78649903919
-
Petri Nets for Modelling Metabolic Pathways: A Survey
-
Baldan, P., Cocco, N., Marin, A., Simeoni, M.: Petri Nets for Modelling Metabolic Pathways: a Survey. J. Natural Computing (9), 955-989 (2010)
-
(2010)
J. Natural Computing
, Issue.9
, pp. 955-989
-
-
Baldan, P.1
Cocco, N.2
Marin, A.3
Simeoni, M.4
-
7
-
-
68549085469
-
Executing multicellular differentiation: Quantitative predictive modelling of c. elegans vulval development
-
Bonzanni, N., Krepska, E., Feenstra, K., Fokkink, W., Kielmann, T., Bal, H., Heringa, J.: Executing multicellular differentiation: quantitative predictive modelling of c. elegans vulval development. Bioinformatics 25, 2049-2056 (2009)
-
(2009)
Bioinformatics
, vol.25
, pp. 2049-2056
-
-
Bonzanni, N.1
Krepska, E.2
Feenstra, K.3
Fokkink, W.4
Kielmann, T.5
Bal, H.6
Heringa, J.7
-
8
-
-
77950325438
-
Biomodel Engineering - From Structure to Behavior
-
Breitling, R., Donaldson, R.A., Gilbert, D., Heiner, M.: Biomodel Engineering - From Structure to Behavior. Lect. Notes Bioinformatics 5945, 1-12 (2010)
-
(2010)
Lect. Notes Bioinformatics
, vol.5945
, pp. 1-12
-
-
Breitling, R.1
Donaldson, R.A.2
Gilbert, D.3
Heiner, M.4
-
9
-
-
0034613112
-
Differential feedback regulation of the MAPK cascade underlies the quantitative differences in EGF and NGF signalling in PC12 cells
-
Brightman, F.A., Fell, D.A.: Differential feedback regulation of the MAPK cascade underlies the quantitative differences in EGF and NGF signalling in PC12 cells. FEBS letters 482(3), 169-174 (2000)
-
(2000)
FEBS Letters
, vol.482
, Issue.3
, pp. 169-174
-
-
Brightman, F.A.1
Fell, D.A.2
-
10
-
-
33845385005
-
Analysis of signalling pathways using continuous time Markov chains
-
Priami, C., Plotkin, G. (eds.) Transactions on Computational Systems Biology VI. Springer, Heidelberg
-
Calder, M., Vyshemirsky, V., Gilbert, D., Orton, R.: Analysis of signalling pathways using continuous time Markov chains. In: Priami, C., Plotkin, G. (eds.) Transactions on Computational Systems Biology VI. LNCS (LNBI), vol. 4220, pp. 44-67. Springer, Heidelberg (2006)
-
(2006)
LNCS (LNBI)
, vol.4220
, pp. 44-67
-
-
Calder, M.1
Vyshemirsky, V.2
Gilbert, D.3
Orton, R.4
-
11
-
-
38049142307
-
Machine learning biochemical networks from temporal logic properties
-
Priami, C., Plotkin, G. (eds.) Transactions on Computational Systems Biology VI. Springer, Heidelberg
-
Calzone, L., Chabrier-Rivier, N., Fages, F., Soliman, S.: Machine learning biochemical networks from temporal logic properties. In: Priami, C., Plotkin, G. (eds.) Transactions on Computational Systems Biology VI. LNCS (LNBI), vol. 4220, pp. 68-94. Springer, Heidelberg (2006)
-
(2006)
LNCS (LNBI)
, vol.4220
, pp. 68-94
-
-
Calzone, L.1
Chabrier-Rivier, N.2
Fages, F.3
Soliman, S.4
-
12
-
-
34548302044
-
Petri Net Modelling of Biological Networks
-
Chaouiya, C.: Petri Net Modelling of Biological Networks. Briefings in Bioinformatics 8(4), 210 (2007)
-
(2007)
Briefings in Bioinformatics
, vol.8
, Issue.4
, pp. 210
-
-
Chaouiya, C.1
-
13
-
-
79960089676
-
Simulation-based model checking approach to cell fate specification during c. elegans vulval development by hybrid functional Petri net with extension
-
Chen, L., Masao, N., Kazuko, U., Satoru, M.: Simulation-based model checking approach to cell fate specification during c. elegans vulval development by hybrid functional Petri net with extension. BMC Systems Biology 42 (2009)
-
(2009)
BMC Systems Biology
, vol.42
-
-
Chen, L.1
Masao, N.2
Kazuko, U.3
Satoru, M.4
-
14
-
-
80054983310
-
Petri net models for the semi-automatic construction of large scale biological networks
-
doi:10.1007/s11047-009-9151-y
-
Chen, M., Hariharaputran, S., Hofestädt, R., Kormeier, B., Spangardt, S.: Petri net models for the semi-automatic construction of large scale biological networks. J. Natural Computing (2009), doi:10.1007/s11047-009- 9151-y
-
(2009)
J. Natural Computing
-
-
Chen, M.1
Hariharaputran, S.2
Hofestädt, R.3
Kormeier, B.4
Spangardt, S.5
-
15
-
-
0003962322
-
-
MIT Press, Cambridge
-
Clarke, E.M., Grumberg, O., Peled, D.A.: Model checking. MIT Press, Cambridge (2001)
-
(2001)
Model Checking
-
-
Clarke, E.M.1
Grumberg, O.2
Peled, D.A.3
-
16
-
-
84891478126
-
-
Springer, Heidelberg
-
David, R., Alla, H.: Discrete, Continuous, and Hybrid Petri Nets. Springer, Heidelberg (2010)
-
(2010)
Discrete, Continuous, and Hybrid Petri Nets
-
-
David, R.1
Alla, H.2
-
17
-
-
37349099877
-
Protein Dynamics Observations of Lambda-Phage by Hybrid Petri net
-
Doi, A., Drath, R., Nagaska, M., Matsuno, H., Miyano, S.: Protein Dynamics Observations of Lambda-Phage by Hybrid Petri net. Genome Informatics, 217-218 (1999)
-
(1999)
Genome Informatics
, pp. 217-218
-
-
Doi, A.1
Drath, R.2
Nagaska, M.3
Matsuno, H.4
Miyano, S.5
-
18
-
-
57049106843
-
A model checking approach to the parameter estimation of biochemical pathways
-
Heiner, M., Uhrmacher, A.M. (eds.) CMSB 2008. Springer, Heidelberg
-
Donaldson, R., Gilbert, D.: A model checking approach to the parameter estimation of biochemical pathways. In: Heiner, M., Uhrmacher, A.M. (eds.) CMSB 2008. LNCS (LNBI), vol. 5307, pp. 269-287. Springer, Heidelberg (2008)
-
(2008)
LNCS (LNBI)
, vol.5307
, pp. 269-287
-
-
Donaldson, R.1
Gilbert, D.2
-
19
-
-
28544451327
-
Foundations for engineering biology
-
Endy, D.: Foundations for engineering biology. Nature 438(7067), 449-453 (2005)
-
(2005)
Nature
, vol.438
, Issue.7067
, pp. 449-453
-
-
Endy, D.1
-
20
-
-
5844330105
-
A concept of hierarchical Petri nets with building blocks
-
Rozenberg, G. (ed.) APN 1993. Springer, Heidelberg
-
Fehling, R.: A concept of hierarchical Petri nets with building blocks. In: Rozenberg, G. (ed.) APN 1993. LNCS, vol. 674, pp. 148-168. Springer, Heidelberg (1993)
-
(1993)
LNCS
, vol.674
, pp. 148-168
-
-
Fehling, R.1
-
21
-
-
0003210134
-
Mathematical aspects of mass action kinetics
-
Lapidus, L., Amundson, N.R. (eds.) ch.1, Prentice-Hall, Englewood Cliffs
-
Feinberg, M.: Mathematical aspects of mass action kinetics. In: Lapidus, L., Amundson, N.R. (eds.) Chemical Reactor Theory: A Review, ch.1, pp. 1-78. Prentice-Hall, Englewood Cliffs (1977)
-
(1977)
Chemical Reactor Theory: A Review
, pp. 1-78
-
-
Feinberg, M.1
-
23
-
-
33746061326
-
From Petri nets to differential equations - An integrative approach for biochemical network analysis
-
Donatelli, S., Thiagarajan, P.S. (eds.) ICATPN 2006. Springer, Heidelberg
-
Gilbert, D., Heiner, M.: From Petri nets to differential equations - an integrative approach for biochemical network analysis. In: Donatelli, S., Thiagarajan, P.S. (eds.) ICATPN 2006. LNCS, vol. 4024, pp. 181-200. Springer, Heidelberg (2006)
-
(2006)
LNCS
, vol.4024
, pp. 181-200
-
-
Gilbert, D.1
Heiner, M.2
-
24
-
-
38049136584
-
A unifying framework for modelling and analysing biochemical pathways using petri nets
-
Calder, M., Gilmore, S. (eds.) CMSB 2007. Springer, Heidelberg
-
Gilbert, D., Heiner, M., Lehrack, S.: A unifying framework for modelling and analysing biochemical pathways using petri nets. In: Calder, M., Gilmore, S. (eds.) CMSB 2007. LNCS (LNBI), vol. 4695, pp. 200-216. Springer, Heidelberg (2007)
-
(2007)
LNCS (LNBI)
, vol.4695
, pp. 200-216
-
-
Gilbert, D.1
Heiner, M.2
Lehrack, S.3
-
25
-
-
47849126239
-
A Case Study in Model-driven Synthetic Biology
-
Gilbert, D., Heiner, M., Rosser, S., R., Fulton, X.G., Trybiło, M.: A Case Study in Model-driven Synthetic Biology. In: Proc. 2nd IFIP Conference on Biologically Inspired Collaborative Computing (BICC), IFIP WCC 2008, Milano, pp. 163-175 (2008)
-
(2008)
Proc. 2nd IFIP Conference on Biologically Inspired Collaborative Computing (BICC), IFIP WCC 2008, Milano
, pp. 163-175
-
-
Gilbert, D.1
Heiner, M.2
Rosser, S.R.3
Fulton, X.G.4
Trybiło, M.5
-
26
-
-
33751013018
-
Synthetic biology - Putting engineering into biology
-
Heinemann, M., Panke, S.: Synthetic biology - putting engineering into biology. Bioinformatics 22(22), 2790-2799 (2006), http://dx.doi.org/10.1093/ bioinformatics/btl469
-
(2006)
Bioinformatics
, vol.22
, Issue.22
, pp. 2790-2799
-
-
Heinemann, M.1
Panke, S.2
-
27
-
-
85014438978
-
Understanding Network Behaviour by Structured Representations of Transition Invariants - A Petri Net Perspective on Systems and Synthetic Biology
-
Springer, Heidelberg
-
Heiner, M.: Understanding Network Behaviour by Structured Representations of Transition Invariants - A Petri Net Perspective on Systems and Synthetic Biology. Natural Computing Series, pp. 367-389. Springer, Heidelberg (2009), http://www.springerlink.com/content/m8t30720r141442m
-
(2009)
Natural Computing Series
, pp. 367-389
-
-
Heiner, M.1
-
28
-
-
78649900844
-
Petri Nets for Systems Biology
-
Iyengar, M.S. (ed.) ch.21, Jones and Bartlett Publishers, Inc.
-
Heiner, M., Donaldson, R., Gilbert, D.: Petri Nets for Systems Biology. In: Iyengar, M.S. (ed.) Symbolic Systems Biology: Theory and Methods, ch.21, Jones and Bartlett Publishers, Inc. (2010)
-
(2010)
Symbolic Systems Biology: Theory and Methods
-
-
Heiner, M.1
Donaldson, R.2
Gilbert, D.3
-
29
-
-
45749112203
-
Petri nets in systems and synthetic biology
-
Bernardo, M., Degano, P., Tennenholtz, M. (eds.) SFM 2008. Springer, Heidelberg
-
Heiner, M., Gilbert, D., Donaldson, R.: Petri nets in systems and synthetic biology. In: Bernardo, M., Degano, P., Tennenholtz, M. (eds.) SFM 2008. LNCS, vol. 5016, pp. 215-264. Springer, Heidelberg (2008)
-
(2008)
LNCS
, vol.5016
, pp. 215-264
-
-
Heiner, M.1
Gilbert, D.2
Donaldson, R.3
-
30
-
-
27544485048
-
Petri Net Based Model Validation in Systems Biology
-
Cortadella, J., Reisig, W. (eds.) ICATPN 2004. Springer, Heidelberg
-
Heiner, M., Koch, I.: Petri Net Based Model Validation in Systems Biology. In: Cortadella, J., Reisig, W. (eds.) ICATPN 2004. LNCS, vol. 3099, pp. 216-237. Springer, Heidelberg (2004)
-
(2004)
LNCS
, vol.3099
, pp. 216-237
-
-
Heiner, M.1
Koch, I.2
-
31
-
-
3042699469
-
Model Validation of Biological Pathways Using Petri Nets - Demonstrated for Apoptosis
-
Heiner, M., Koch, I., Will, J.: Model Validation of Biological Pathways Using Petri Nets - Demonstrated for Apoptosis. BioSystems 75, 15-28 (2004)
-
(2004)
BioSystems
, vol.75
, pp. 15-28
-
-
Heiner, M.1
Koch, I.2
Will, J.3
-
32
-
-
70450204413
-
Extended Stochastic Petri Nets for Model-Based Design of Wetlab Experiments
-
Heiner, M., Lehrack, S., Gilbert, D., Marwan, W.: Extended Stochastic Petri Nets for Model-Based Design of Wetlab Experiments. Transactions on Computational Systems Biology XI, 138-163 (2009)
-
(2009)
Transactions on Computational Systems Biology
, vol.11
, pp. 138-163
-
-
Heiner, M.1
Lehrack, S.2
Gilbert, D.3
Marwan, W.4
-
33
-
-
84920675125
-
On the Importance of the Deadlock Trap Property for Monotonic Liveness
-
Heiner, M., Mahulea, C., Silva, M.: On the Importance of the Deadlock Trap Property for Monotonic Liveness. In: Int. Workshop on Biological Processes & Petri Nets (BioPPN), satellite event of Petri Nets 2010 (2010)
-
Int. Workshop on Biological Processes & Petri Nets (BioPPN), Satellite Event of Petri Nets 2010 (2010)
-
-
Heiner, M.1
Mahulea, C.2
Silva, M.3
-
34
-
-
78649859232
-
A Comparative Study of Stochastic Analysis Techniques
-
ACM Digital Library 978-1-4503-0068-1/10/09
-
M., Heiner, C.R., M., Schwarick, S.S.: A Comparative Study of Stochastic Analysis Techniques. In: Proc. CMSB, pp. 96-106 (2010) ; ACM Digital Library 978-1-4503-0068-1/10/09
-
(2010)
Proc. CMSB
, pp. 96-106
-
-
Heiner, M.1
R, C.2
Schwarick, M.3
S, S.4
-
35
-
-
70349368137
-
DSSZ-MC - A Tool for Symbolic Analysis of Extended Petri Nets
-
Franceschinis, G., Wolf, K. (eds.) PETRI NETS 2009. Springer, Heidelberg
-
Heiner, M., Schwarick, M., Tovchigrechko, A.: DSSZ-MC - A Tool for Symbolic Analysis of Extended Petri Nets. In: Franceschinis, G., Wolf, K. (eds.) PETRI NETS 2009. LNCS, vol. 5606, pp. 323-332. Springer, Heidelberg (2009)
-
(2009)
LNCS
, vol.5606
, pp. 323-332
-
-
Heiner, M.1
Schwarick, M.2
Tovchigrechko, A.3
-
36
-
-
77649280061
-
Structural analysis to determine the core of hypoxia response network
-
doi:10.1371/journal.pone.0008600
-
Heiner, M., Sriram, K.: Structural analysis to determine the core of hypoxia response network. PLoS ONE 5(1), e8600 (2010), http://dx.doi.org/10. 1371/journal.pone.0008600, doi:10.1371/journal.pone.0008600
-
(2010)
PLoS ONE
, vol.5
, Issue.1
-
-
Heiner, M.1
Sriram, K.2
-
37
-
-
79958064220
-
Hybrid Petri Nets for Modelling of Hybrid Biochemical Interactions
-
CEUR-WS.org
-
Herajy, M., Heiner, M.: Hybrid Petri Nets for Modelling of Hybrid Biochemical Interactions. In: Proc. AWPN 2010, CEUR Workshop Proceedings, vol. 643, pp. 66-79. CEUR-WS.org (2010)
-
(2010)
Proc. AWPN 2010, CEUR Workshop Proceedings
, vol.643
, pp. 66-79
-
-
Herajy, M.1
Heiner, M.2
-
38
-
-
0032229446
-
Quantitative modeling of biochemical networks
-
Hofestädt, R., Thelen, S.: Quantitative modeling of biochemical networks. In Silico Biol. 1, 39-53 (1998)
-
(1998)
Silico Biol.
, vol.1
, pp. 39-53
-
-
Hofestädt, R.1
Thelen, S.2
-
39
-
-
0037288767
-
Systems biology: Integrating technology, biology, and computation
-
Hood, L.: Systems biology: integrating technology, biology, and computation. Mechanisms of Ageing and Development 124(1), 9-16 (2003)
-
(2003)
Mechanisms of Ageing and Development
, vol.124
, Issue.1
, pp. 9-16
-
-
Hood, L.1
-
40
-
-
33845368513
-
Copasi - A complex pathway simulator
-
Hoops, S., Sahle, S., Gauges, R., Lee, C., Pahle, J., Simus, N., Singhal, M., Xu, L., Mendes, P., Kummer, U.: Copasi - a complex pathway simulator. BioInformatics 22(24), 3067-3074 (2006)
-
(2006)
BioInformatics
, vol.22
, Issue.24
, pp. 3067-3074
-
-
Hoops, S.1
Sahle, S.2
Gauges, R.3
Lee, C.4
Pahle, J.5
Simus, N.6
Singhal, M.7
Xu, L.8
Mendes, P.9
Kummer, U.10
-
41
-
-
0037342537
-
The Systems Biology Markup Language (SBML): A Medium for Representation and Exchange of Biochemical Network Models
-
Hucka, M., Finney, A., Sauro, H.M., Bolouri, H., Doyle, J.C., Kitano, H., et al.: The Systems Biology Markup Language (SBML): A Medium for Representation and Exchange of Biochemical Network Models. J. Bioinformatics 19, 524-531 (2003)
-
(2003)
J. Bioinformatics
, vol.19
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
Kitano, H.6
-
43
-
-
79958075211
-
A Petri net representation of Bayesian message flows: Importance of Bayesian networks for biological applications
-
doi:10.1007/s11047-009-9142-z
-
Lautenbach, K., Pinl, A.: A Petri net representation of Bayesian message flows: importance of Bayesian networks for biological applications. J. Natural Computing (2009), doi:10.1007/s11047-009-9142-z
-
(2009)
J. Natural Computing
-
-
Lautenbach, K.1
Pinl, A.2
-
44
-
-
84890307870
-
Computation of Enabled Transition Instances for Colored Petri Nets
-
CEUR-WS.org
-
Liu, F., Heiner, M.: Computation of Enabled Transition Instances for Colored Petri Nets. In: Proc. AWPN 2010, CEUR Workshop Proceedings, vol. 643, pp. 51-65. CEUR-WS.org (2010)
-
(2010)
Proc. AWPN 2010, CEUR Workshop Proceedings
, vol.643
, pp. 51-65
-
-
Liu, F.1
Heiner, M.2
-
45
-
-
0003652825
-
-
2nd edn. John Wiley and Sons, Chichester
-
Marsan, M.A., Balbo, G., Conte, G., Donatelli, S., Franceschinis, G.: Modelling with Generalized Stochastic Petri Nets, 2nd edn. John Wiley and Sons, Chichester (1995)
-
(1995)
Modelling with Generalized Stochastic Petri Nets
-
-
Marsan, M.A.1
Balbo, G.2
Conte, G.3
Donatelli, S.4
Franceschinis, G.5
-
46
-
-
79960091099
-
Petri nets in Snoopy: A unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks
-
vol. ch.21. Humana Press
-
Marwan, W., Rohr, C., Heiner, M.: Petri nets in Snoopy: A unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks. Methods in Molecular Biology, vol. ch.21. Humana Press (2011)
-
(2011)
Methods in Molecular Biology
-
-
Marwan, W.1
Rohr, C.2
Heiner, M.3
-
47
-
-
23744463967
-
Reconstructing the regulatory network controlling commitment and sporulation in Physarum polycephalum based on hierarchical Petri net modeling and simulation
-
Marwan, W., Sujathab, A., Starostzik, C.: Reconstructing the regulatory network controlling commitment and sporulation in Physarum polycephalum based on hierarchical Petri net modeling and simulation. J. of Theoretical Biology 236(4), 349-365 (2005)
-
(2005)
J. of Theoretical Biology
, vol.236
, Issue.4
, pp. 349-365
-
-
Marwan, W.1
Sujathab, A.2
Starostzik, C.3
-
48
-
-
79958020937
-
Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks
-
doi:10.1007/s11047-009-9152-x
-
Marwan, W., Wagler, A., Weismantel, R.: Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks. J. Natural Computing (2009), doi:10.1007/s11047-009-9152-x
-
(2009)
J. Natural Computing
-
-
Marwan, W.1
Wagler, A.2
Weismantel, R.3
-
49
-
-
0004156072
-
-
Irvine: Univ. California, PhD Thesis, available from Ann Arbor: Univ Microfilms, No. 75-11026
-
Merlin, P.: A Study of the Recoverability of Computing Systems. Irvine: Univ. California, PhD Thesis, available from Ann Arbor: Univ Microfilms, No. 75-11026 (1974)
-
(1974)
A Study of the Recoverability of Computing Systems
-
-
Merlin, P.1
-
50
-
-
77649279538
-
Foundations of Systems Biology Using Cell Illustrator and Pathway Databases
-
Springer, Heidelberg
-
Nagasaki, M., Saito, A., Doi, A., Matsuno, H., Miyano, S.: Foundations of Systems Biology Using Cell Illustrator and Pathway Databases. Computational Biology, vol. 13. Springer, Heidelberg (2009)
-
(2009)
Computational Biology
, vol.13
-
-
Nagasaki, M.1
Saito, A.2
Doi, A.3
Matsuno, H.4
Miyano, S.5
-
51
-
-
79958048335
-
Error-correcting Petri nets
-
doi:10.1007/s11047-009-9150-z
-
Pagnoni, A.: Error-correcting Petri nets. J. Natural Computing (2009), doi:10.1007/s11047-009-9150-z
-
(2009)
J. Natural Computing
-
-
Pagnoni, A.1
-
55
-
-
79960075087
-
Quantitative evaluation of time petri nets and applications to technical and biochemical networks
-
Popova, L., Heiner, M.: Quantitative evaluation of time petri nets and applications to technical and biochemical networks. In: Proc. Int. Workshop on Concurrency, Specification and Programming (CS&P 2007), Lagów, vol. 2, pp. 473-484 (2007)
-
(2007)
Proc. Int. Workshop on Concurrency, Specification and Programming (CS&P 2007), Lagów
, vol.2
, pp. 473-484
-
-
Popova, L.1
Heiner, M.2
-
57
-
-
80054973522
-
Quantitative evaluation of time-dependent Petri nets and applications to biochemical networks
-
doi:10.1007/s11047-010-9211-3
-
Popova-Zeugmann, L.: Quantitative evaluation of time-dependent Petri nets and applications to biochemical networks. J. Natural Computing (2010), doi:10.1007/s11047-010-9211-3
-
(2010)
J. Natural Computing
-
-
Popova-Zeugmann, L.1
-
59
-
-
77951956151
-
Snoopy - A unifying Petri net framework to investigate biomolecular networks
-
Rohr, C., W., Marwan, M.H.: Snoopy - a unifying Petri net framework to investigate biomolecular networks. Bioinformatics 26(7), 974-975 (2010)
-
(2010)
Bioinformatics
, vol.26
, Issue.7
, pp. 974-975
-
-
Rohr, C.W.1
Marwan, M.H.2
-
60
-
-
70349339190
-
CSL Model Checking of Biochemical Networks with Interval Decision Diagrams
-
Degano, P., Gorrieri, R. (eds.) CMSB 2009. Springer, Heidelberg
-
Schwarick, M., Heiner, M.: CSL Model Checking of Biochemical Networks with Interval Decision Diagrams. In: Degano, P., Gorrieri, R. (eds.) CMSB 2009. LNCS, vol. 5688, pp. 296-312. Springer, Heidelberg (2009)
-
(2009)
LNCS
, vol.5688
, pp. 296-312
-
-
Schwarick, M.1
Heiner, M.2
-
61
-
-
77949398351
-
Structural Sources of Robustness in Biochemical Reaction Networks
-
Shinar, G., Feinberg, M.: Structural Sources of Robustness in Biochemical Reaction Networks. Science 327, 1389-1391 (2010)
-
(2010)
Science
, vol.327
, pp. 1389-1391
-
-
Shinar, G.1
Feinberg, M.2
-
62
-
-
0036881072
-
Petri nets and integrality relaxations: A view of continuous Petri net models
-
Silva, M., Recalde, L.: Petri nets and integrality relaxations: A view of continuous Petri net models. IEEE Transactions on Systems, Man, and Cybernetics, Part C: Applications and Reviews 32(4), 314-327 (2002)
-
(2002)
IEEE Transactions on Systems, Man, and Cybernetics, Part C: Applications and Reviews
, vol.32
, Issue.4
, pp. 314-327
-
-
Silva, M.1
Recalde, L.2
-
63
-
-
78650971919
-
A unique transformation from ordinary differential equations to reaction networks
-
Soliman, S., Heiner, M.: A unique transformation from ordinary differential equations to reaction networks. PlosONE 5(12), e14284 (2010)
-
(2010)
PlosONE
, vol.5
, Issue.12
-
-
Soliman, S.1
Heiner, M.2
-
64
-
-
85034565293
-
Self-modifying nets, a natural extension of Petri nets. Automata, Languages and Programming
-
Springer, Heidelberg
-
Valk, R.: Self-modifying nets, a natural extension of Petri nets. In: Automata, Languages and Programming. LNCS, vol. 62, pp. 464-476. Springer, Heidelberg (1978)
-
(1978)
LNCS
, vol.62
, pp. 464-476
-
-
Valk, R.1
-
65
-
-
77954191450
-
Polynomial algebra of discrete models in systems biology
-
Veliz-Cuba, A., Jarrah, A.S., Laubenbacher, R.: Polynomial algebra of discrete models in systems biology. Bioinformatics 26(13), 1637-1643 (2010)
-
(2010)
Bioinformatics
, vol.26
, Issue.13
, pp. 1637-1643
-
-
Veliz-Cuba, A.1
Jarrah, A.S.2
Laubenbacher, R.3
-
66
-
-
79958064437
-
The combinatorics of modeling and analyzing biological systems
-
doi:10.1007/s11047-009-9165-5
-
Wagler, A., Weismantel, R.: The combinatorics of modeling and analyzing biological systems. J. Natural Computing (2009), doi:10.1007/s11047-009-9165-5
-
(2009)
J. Natural Computing
-
-
Wagler, A.1
Weismantel, R.2
|