Evaluation of negation and uncertainty detection and its impact on precision and recall in search

Journal of Digital Imaging

Volumn 24, Issue 2, 2011, Pages 234-242

  Wu, Andrew S ^a   Do, Bao H ^b   Kim, Jinsuh ^a   Rubin, Daniel L ^c  

^a UNIVERSITY OF IOWA HOSPITALS AND CLINICS   (United States)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c STANFORD UNIVERSITY   (United States)

Author keywords

Data extraction; Data mining; Databases; Efficiency; Natural language processing; Negation; Reporting

Indexed keywords

CONTEXT-AWARE; DATA EXTRACTION; GOOGLE DESKTOP; HYDRONEPHROSIS; NATURAL LANGUAGE PROCESSING; NEGATION; OPTIC NEURITIS; PRECISION AND RECALL; RADIOLOGY REPORTS; REPORTING; RETRIEVAL PERFORMANCE; RETRIEVAL SYSTEMS; SEARCH RESULTS; SEARCH TERMS; UNCERTAINTY IDENTIFICATION;

COMPUTATIONAL LINGUISTICS; DATA MINING; INFORMATION RETRIEVAL; NATURAL LANGUAGE PROCESSING SYSTEMS; QUALITY ASSURANCE; RADIATION; RADIOLOGY; TEACHING;

SEARCH ENGINES;

ARTICLE; DATA MINING; EVALUATION; FACTUAL DATABASE; HOSPITAL INFORMATION SYSTEM; HUMAN; METHODOLOGY; NATURAL LANGUAGE PROCESSING; REPRODUCIBILITY; SEARCH ENGINE; UNCERTAINTY;

DATA MINING; DATABASES, FACTUAL; HUMANS; NATURAL LANGUAGE PROCESSING; RADIOLOGY INFORMATION SYSTEMS; REPRODUCIBILITY OF RESULTS; SEARCH ENGINE; UNCERTAINTY;

EID: 79960083915     PISSN: 08971889     EISSN: 1618727X     Source Type: Journal    
DOI: 10.1007/s10278-009-9250-4     Document Type: Article

References (13)

1. Desjardins B, Hamilton RC: A practical approach for inexpensive searches of radiology report databases. Acad Radiol 14(6):749-756, 2007 (Pubitemid 46908688)
2. Dreyer KJ, Kalra MK, Maher MM, Hurier AM, Asfaw BA, Schultz T, Halpern EF, Thrall JH: Application of recently developed computer algorithm for automatic classification of unstructured radiology reports: validation study. Radiology 234 (2):323-329, 2005 (Pubitemid 40139895)
3. Erinjeri JP, Picus D, Prior FW, Rubin DA, Koppel P: Development of a Google-based search engine for data mining radiology reports. J Digit Imaging 22(4):348-356, 2008
4. Rubin DL, Desser TS: A data warehouse for integrating radiologic and pathologic data. J Am Coll Radiol 5(3):210-217, 2008 (Pubitemid 351296011)
5. Wong ST, Hoo Jr, KS, Cao X, Tjandra D, Fu JC, Dillon WP: A neuroinformatics database system for disease-oriented neuroimaging research. Acad Radiol 11(3):345-358, 2004 (Pubitemid 38269473)
6. Ramaswamy MR, Patterson DS, Yin L, Goodacre BW: MoSearch: a radiologist-friendly tool for finding-based diagnostic report and image retrieval. Radiographics 16(4):923-933, 1996 (Pubitemid 126448456)
7. Uzuner O, Zhang X, Sibanda T: Machine learning and rule-based approaches to assertion classification. J Am Med Inform Assoc 16(1):109-115, 2009
8. South BR, Phansalkar S, Swaminathan AD, Delisle S, Perl T, Samore MH: Adaptation of the NegEx algorithm to Veterans Affairs electronic text notes for detection of influenza-like illness (ILI). AMIA Annu Symp Proc 1118, 2007
9. Mitchell KJ, Becich MJ, Berman JJ, Chapman WW, Gilbertson J, Gupta D, Harrison J, Legowski E, Crowley RS: Implementation and evaluation of a negation tagger in a pipeline-based system for information extract from pathology reports. Stud Health Technol Inform 107(Pt 1):663-667, 2004
10. Meystre SM, Haug PJ: Comparing natural language processing tools to extract medical problems from narrative text. AMIA Annu Symp Proc 525-529, 2005
11. Yang H, Lowe HJ: A grammar-based classification of negations in clinical radiology reports. AMIA Annu Symp Proc 988, 2005
12. Yang H, Lowe HJ: A novel hybrid approach to automated negation detection in clinical radiology reports. J Am Med Inform Assoc 14(3):304-311, 2007 (Pubitemid 46636340)
13. Chapman WW, Bridewell W, Hanbury P, Cooper GF, Buchanan BG: A simple algorithm for identifying negated findings and diseases in discharge summaries. J Biomed Inform 34(5):301-310, 2001 (Pubitemid 34694864)