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Volumn 77, Issue 12, 2011, Pages 4241-4245

Microarray-based evaluation of whole-community genome DNA amplification methods

Author keywords

[No Author keywords available]

Indexed keywords

DNA AMPLIFICATION; LOW QUALITIES; TEMPLIPHI;

EID: 79960082882     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01834-10     Document Type: Article
Times cited : (20)

References (30)
  • 1
    • 33846492471 scopus 로고    scopus 로고
    • Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues
    • doi, 10.1186/1471-2164-7-312
    • Aviel-Ronen, S., et al. 2006. Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues. BMC Genomics 7:312. doi:10.1186/1471-2164-7-312.
    • (2006) BMC Genomics , vol.7 , pp. 312
    • Aviel-Ronen, S.1
  • 2
    • 26844442640 scopus 로고    scopus 로고
    • Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance
    • doi, 10.1186/1472-6750-5-24
    • Bergen, A., Y. Qi, K. Haque, R. Welch, and S. Chanock. 2005. Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance. BMC Biotechnol. 5:24. doi:10.1186/1472-6750-5-24.
    • (2005) BMC Biotechnol , vol.5 , pp. 24
    • Bergen, A.1    Qi, Y.2    Haque, K.3    Welch, R.4    Chanock, S.5
  • 3
    • 0024335104 scopus 로고
    • Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication
    • Blanco, L., et al. 1989. Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication. J. Biol. Chem. 64:8935-8940.
    • (1989) J. Biol. Chem. , vol.264 , pp. 8935-8940
    • Blanco, L.1
  • 4
    • 33748803005 scopus 로고    scopus 로고
    • Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1
    • Chourey, K., et al. 2006. Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1. Appl. Environ. Microbiol. 72:6331-6344.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 6331-6344
    • Chourey, K.1
  • 5
    • 18344396798 scopus 로고    scopus 로고
    • Comprehensive human genome amplification using multiple displacement amplification
    • Dean, F. B., et al. 2002. Comprehensive human genome amplification using multiple displacement amplification. Proc. Natl. Acad. Sci. U. S. A. 99:5261- 266.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 5261-5266
    • Dean, F.B.1
  • 6
    • 0034830935 scopus 로고    scopus 로고
    • Rapid amplification of plasmid and phage DNA using phi29 DNA polymerase and multiply-primed rolling circle amplification
    • Dean, F. B., J. R. Nelson, T. L. Giesler, and R. S. Lasken. 2001. Rapid amplification of plasmid and phage DNA using phi29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res. 11:1095-1099.
    • (2001) Genome Res. , vol.11 , pp. 1095-1099
    • Dean, F.B.1    Nelson, J.R.2    Giesler, T.L.3    Lasken, R.S.4
  • 8
    • 0037391375 scopus 로고    scopus 로고
    • Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays
    • El Fantroussi, S., et al. 2003. Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays. Appl. Environ. Microbiol. 69:2377-2382.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2377-2382
    • El Fantroussi, S.1
  • 9
    • 7744230895 scopus 로고    scopus 로고
    • Global transcriptome analysis of the heat shock response of Shewanella oneidensis
    • Gao, H., et al. 2004. Global transcriptome analysis of the heat shock response of Shewanella oneidensis. J. Bacteriol. 186:7796-7803.
    • (2004) J. Bacteriol. , vol.186 , pp. 7796-7803
    • Gao, H.1
  • 10
    • 77956094278 scopus 로고    scopus 로고
    • GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
    • He, Z., et al. 2010. GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J. 4:1167-179.
    • (2010) ISME J. , vol.4 , pp. 1167-1179
    • He, Z.1
  • 11
  • 12
    • 44249085420 scopus 로고    scopus 로고
    • Empirical evaluation of a new method for calculating signal-to-noise ratio for microarray data analysis
    • He, Z., and J. Zhou. 2008. Empirical evaluation of a new method for calculating signal-to-noise ratio for microarray data analysis. Appl. Environ. Microbiol. 74:2957-2966.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2957-2966
    • He, Z.1    Zhou, J.2
  • 14
    • 0038781878 scopus 로고    scopus 로고
    • Unbiased whole-genome amplification directly from clinical samples
    • Hosono, S., et al. 2003. Unbiased whole-genome amplification directly from clinical samples. Genome Res. 13:954-964.
    • (2003) Genome Res. , vol.13 , pp. 954-964
    • Hosono, S.1
  • 15
    • 0037315428 scopus 로고    scopus 로고
    • Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH
    • Lage, J. M., et al. 2003. Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH. Genome Res. 13:294-307.
    • (2003) Genome Res. , vol.13 , pp. 294-307
    • Lage, J.M.1
  • 16
    • 35748983784 scopus 로고    scopus 로고
    • Single-cell genomic sequencing using multiple displacement amplification
    • Lasken, R. S. 2007. Single-cell genomic sequencing using multiple displacement amplification. Curr. Opin. Microbiol. 10:510-516.
    • (2007) Curr. Opin. Microbiol. , vol.10 , pp. 510-516
    • Lasken, R.S.1
  • 17
    • 32444442149 scopus 로고    scopus 로고
    • Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH
    • Leaphart, A. B., et al. 2006. Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH. J. Bacteriol. 88:1633-1642.
    • (2006) J. Bacteriol. , vol.188 , pp. 1633-1642
    • Leaphart, A.B.1
  • 18
    • 33748591589 scopus 로고    scopus 로고
    • Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
    • doi, 10.1186/1471-2164-7-216
    • Pinard, R., et al. 2006. Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. BMC Genomics 7:216. doi:10.1186/1471-2164-7-216.
    • (2006) BMC Genomics , vol.7 , pp. 216
    • Pinard, R.1
  • 19
    • 31344445883 scopus 로고    scopus 로고
    • Transcriptome analysis applied to survival of Shewanella oneidensis MR-1 exposed to ionizing radiation
    • Qiu, X., et al. 2006. Transcriptome analysis applied to survival of Shewanella oneidensis MR-1 exposed to ionizing radiation. J. Bacteriol. 188:1199-1204.
    • (2006) J. Bacteriol. , vol.188 , pp. 1199-1204
    • Qiu, X.1
  • 20
    • 20444418081 scopus 로고    scopus 로고
    • Genomic DNA amplification from a single bacterium
    • Raghunathan, A., et al. 2005. Genomic DNA amplification from a single bacterium. Appl. Environ. Microbiol. 71:3342-3347.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3342-3347
    • Raghunathan, A.1
  • 21
    • 3242773890 scopus 로고    scopus 로고
    • Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays
    • Rhee, S.-K., et al. 2004. Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays. Appl. Environ. Microbiol. 70:4303-4317.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4303-4317
    • Rhee, S.-K.1
  • 22
    • 33646372472 scopus 로고    scopus 로고
    • Optimization and evaluation of single-cell wholegenome multiple displacement amplification
    • Spits, C., et al. 2006. Optimization and evaluation of single-cell wholegenome multiple displacement amplification. Hum. Mutat. 27:496-503.
    • (2006) Hum. Mutat. , vol.27 , pp. 496-503
    • Spits, C.1
  • 23
    • 1842579620 scopus 로고    scopus 로고
    • Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples
    • Tiquia, S. M., et al. 2004. Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. Biotechniques 36:664-75.
    • (2004) Biotechniques , vol.36 , pp. 664-675
    • Tiquia, S.M.1
  • 24
    • 70349696012 scopus 로고    scopus 로고
    • GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer
    • Van Nostrand, J. D., et al. 2009. GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer. Environ. Microbiol. 11:2611-2626.
    • (2009) Environ. Microbiol. , vol.11 , pp. 2611-2626
    • Van Nostrand, J.D.1
  • 25
    • 8744249226 scopus 로고    scopus 로고
    • DNA amplification method tolerant to sample degradation
    • Wang, G., et al. 2004. DNA amplification method tolerant to sample degradation. Genome Res. 14:2357-2366.
    • (2004) Genome Res. , vol.14 , pp. 2357-2366
    • Wang, G.1
  • 26
    • 33746095025 scopus 로고    scopus 로고
    • Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification
    • Wu, L., X. Liu, C. W. Schadt, and J. Zhou. 2006. Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification. Appl. Environ. Microbiol. 72:4931-4941.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 4931-4941
    • Wu, L.1    Liu, X.2    Schadt, C.W.3    Zhou, J.4
  • 27
    • 10644242777 scopus 로고    scopus 로고
    • Development and evaluation of microarray-based wholegenome hybridization for detection of microorganisms within the context of environmental applications
    • Wu, L., et al. 2004. Development and evaluation of microarray-based wholegenome hybridization for detection of microorganisms within the context of environmental applications. Environ. Sci. Technol. 38:6775-6782.
    • (2004) Environ. Sci. Technol. , vol.38 , pp. 6775-6782
    • Wu, L.1
  • 28
    • 33745085561 scopus 로고    scopus 로고
    • Sequencing genomes from single cells by polymerase cloning
    • Zhang, K., et al. 2006. Sequencing genomes from single cells by polymerase cloning. Nat. Biotechnol. 24:680-686.
    • (2006) Nat. Biotechnol. , vol.24 , pp. 680-686
    • Zhang, K.1
  • 30
    • 0029031784 scopus 로고
    • Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth on toluene and description of Azoarcus tolulyticus sp. nov
    • Zhou, J., M. R. Fries, J. C. Chee-Sanford, and J. M. Tiedje. 1995. Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth on toluene and description of Azoarcus tolulyticus sp. nov. Int. J. Syst. Bacteriol. 45:500-506.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 500-506
    • Zhou, J.1    Fries, M.R.2    Chee-Sanford, J.C.3    Tiedje, J.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.