Sweet memories: Epigenetic control in flowering

F1000 Biology Reports

Volumn 3, Issue 1, 2011, Pages

  Müller, Ralf ^a   Goodrich, Justin ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

POLYCOMB GROUP PROTEIN; TRANSCRIPTION ELONGATION FACTOR; UNTRANSLATED RNA;

DNA BINDING; EPIGENETICS; FLOWERING; GENE EXPRESSION; GENE LOCUS; GENE MUTATION; GENE SILENCING; PLANT CELL; PLANT GENE; PRIMORDIAL GERM CELL; PROTEIN STRUCTURE; RECEPTOR DOWN REGULATION; REVIEW; STEM CELL; VERNALIZATION;

EID: 79960082698     PISSN: 17404118     EISSN: 1757594X     Source Type: Journal    
DOI: 10.3410/B3-13     Document Type: Review

References (40)

1. Lang A: Physiology of flower initiation. In Encyclopedia of Plant Physiology. Edited by RuhlandW. Berlin: Springer-Verlag; 1965: 1371-536.
2. Alvarez-Venegas R: Regulation by Polycomb and Trithorax Group Proteins in Arabidopsis. The Arabidopsis Book 2010, 8:1-20.
3. Margueron R, Reinberg D: The Polycomb complex PRC2 and its mark in life. Nature 2011, 469:343-9.
4. Searle I, He Y, Turck F, Vincent C, Fornara F, Krober S, Amasino RA, Coupland G: The transcription factor FLC confers a flowering response to vernalization by repressing meristem competence and systemic signaling in Arabidopsis. Genes Dev 2006, 20:898-912. F1000 Factor 6 Evaluated by Vivian Irish 11 May 2006
5. De Lucia F, Crevillen P, Jones AM, Greb T, Dean C: A PHDpolycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization. Proc Natl Acad Sci U S A 2008, 105:16831-6. F1000 Factor 8 Evaluated by Justin Goodrich 08 Feb 2011
6. Bastow R, Mylne JS, Lister C, Lippman Z, Martienssen RA, Dean C: Vernalization requires epigenetic silencing of FLC by histone methylation. Nature 2004, 427:164-7. F1000 Factor 9 Evaluated by Detlef Weigel 05 Feb 2004, Thomas Jenuwein 05 Jan 2005
7. Turck F, Roudier F, Farrona S, Martin-Magniette ML, Guillaume E, Buisine N, Gagnot S, Martienssen RA, Coupland G, Colot V: Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. PLoS Genet 2007, 3:e86. F1000 Factor 8 Evaluated by Phil Wigge 14 Jun 2007
8. Hansen KH, Bracken AP, Pasini D, Dietrich N, Gehani SS, Monrad A, Rappsilber J, Lerdrup M, Helin K: A model for transmission of the H3K27me3 epigenetic mark. Nat Cell Biol 2008, 10:1291-300. F1000 Factor 9 Evaluated by Leonie Ringrose 06 Nov 2008, Andrew Feinberg 25 Nov 2008
9. Margueron R, Justin N, Ohno K, Sharpe ML, Son J, Drury WJ III, Voigt P, Martin SR, Taylor WR, De MV, Pirrotta V, Reinberg D, Gamblin SJ: Role of the polycomb protein EED in the propagation of repressive histone marks. Nature 2009, 461:762-7.
10. Stock JK, Giadrossi S, Casanova M, Brookes E, Vidal M, Koseki H, Brockdorff N, Fisher AG, Pombo A: Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells. Nat Cell Biol 2007, 9:1428-35. F1000 Factor 8 Evaluated by Brad Bernstein 11 Dec 2007
11. Zhou W, Zhu P, Wang J, Pascual G, Ohgi KA, Lozach J, Glass CK, Rosenfeld MG: Histone H2A monoubiquitination represses transcription by inhibiting RNA polymerase II transcriptional elongation. Mol Cell 2008, 29:69-80. F1000 Factor 8 Evaluated by Cheng-Ming Chiang 05 Feb 2008
12. Eskeland R, Leeb M, Grimes GR, Kress C, Boyle S, Sproul D, Gilbert N, Fan Y, Skoultchi AI, Wutz A, Bickmore WA: Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination. Mol Cell 2010, 38:452-64. F1000 Factor 6 Evaluated by Rob White 16 Jun 2010
13. Bratzel F, Lopez-Torrejon G, Koch M, Del Pozo JC, Calonje M: Keeping cell identity in arabidopsis requires PRC1 RING-finger homologs that catalyze H2A monoubiquitination. Curr Biol 2010, 20:1853-9. F1000 Factor 6 Evaluated by Jennifer Fletcher 25 Oct 2010
14. Chen D, Molitor A, Liu C, Shen WH: The Arabidopsis PRC1-like ring-finger proteins are necessary for repression of embryonic traits during vegetative growth. Cell Res 2010, 20:1332-44.
15. Heo JB, Sung S: Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science 2011, 331:76-9. F1000 Factor 14 Evaluated by Fyodor Urnov 16 Dec 2010, Elizabeth Dennis 23 Dec 2010, Ilha Lee 04 Jan 2011, Kan Wang 31 Jan 2011, Jae-Hyuk Yu 11 Feb 2011
16. Sheldon CC, Conn AB, Dennis ES, Peacock WJ: Different regulatory regions are required for the vernalization-induced repression of FLOWERING LOCUS C and for the epigenetic maintenance of repression. Plant Cell 2002, 14:2527-37. (Pubitemid 35224847)
17. Sung S, He Y, Eshoo TW, Tamada Y, Johnson L, Nakahigashi K, Goto K, Jacobsen SE, Amasino RM: Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1. Nat Genet 2006, 38:706-10. (Pubitemid 43927315)
18. Swiezewski S, Liu F, Magusin A, Dean C: Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Nature 2009, 462:799-802. F1000 Factor 8 Evaluated by Vitaly Citovsky 18 Jan 2010
19. Hornyik C, Terzi LC, Simpson GG: The spen family protein FPA controls alternative cleavage and polyadenylation of RNA. Dev Cell 2010, 18:203-13. F1000 Factor 9 Evaluated by Ilha Lee 14 May 2010, Motoaki Seki 13 Jul 2010
20. Liu F, Marquardt S, Lister C, Swiezewski S, Dean C: Targeted 3′ processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing. Science 2010, 327:94-7.
21. Pin PA, Benlloch R, Bonnet D, Wremerth-Weich E, Kraft T, Gielen JJ, Nilsson O: An antagonistic pair of FT homologs mediates the control of flowering time in sugar beet. Science 2010, 330:1397-400. F1000 Factor 9 Evaluated by Ilha Lee 04 Feb 2011, Justin Goodrich 08 Feb 2011
22. Oliver SN, Finnegan EJ, Dennis ES, Peacock WJ, Trevaskis B: Vernalization-induced flowering in cereals is associated with changes in histone methylation at the VERNALIZATION1 gene. Proc Natl Acad Sci U S A 2009, 106:8386-91.
23. Brand U, Fletcher JC, Hobe M, Meyerowitz EM, Simon R: Dependence of stem cell fate in Arabidopsis on a feedback loop regulated by CLV3 activity. Science 2000, 289:617-9. (Pubitemid 30622065)
24. Schoof H, Lenhard M, Haecker A, Mayer KF, Jürgens G, Laux T: The stem cell population of Arabidopsis shoot meristems in maintained by a regulatory loop between the CLAVATA and WUSCHEL genes. Cell 2000, 100:635-44.
25. Müller R, Borghi L, Kwiatkowska D, Laufs P, Simon R: Dynamic and compensatory responses of Arabidopsis shoot and floral meristems to CLV3 signaling. Plant Cell 2006, 18:1188-98. F1000 Factor 6 Evaluated by Christiaan van der Schoot 12 Jan 2007
26. Lenhard M, Bohnert A, Jürgens G, Laux T: Termination of stem cell maintenance in Arabidopsis floral meristems by interactions between WUSCHEL and AGAMOUS. Cell 2001, 105:805-14. F1000 Factor 8 Evaluated by Philip Benfey 05 Nov 2001
27. Lohmann JU, Hong RL, Hobe M, Busch MA, Parcy F, Simon R, Weigel D: A molecular link between stem cell regulation and floral patterning in Arabidopsis. Cell 2001, 105:793-803. F1000 Factor 15 Evaluated by Richard M Amasino 18 Oct 2001, Philip Benfey 05 Nov 2001, David Baum 21 May 2002
28. Carles CC, Fletcher JC: The SAND domain protein ULTRAPETALA1 acts as a trithorax group factor to regulate cell fate in plants. Genes Dev 2009, 23:2723-8. F1000 Factor 12 Evaluated by Vivian Irish 09 Dec 2009, Elena Alvarez-Buylla 17 Dec 2009, Kay Schneitz 05 Jan 2010, Justin Goodrich 08 Feb 2011
29. Sun B, Xu Y, Ng KH, Ito T: A timing mechanism for stem cell maintenance and differentiation in the Arabidopsis floral meristem. Genes Dev 2009, 23:1791-804. F1000 Factor 13 Evaluated by Kay Schneitz 13 Aug 2009, David Smyth 15 Sep 2009, Jennifer Fletcher 19 Oct 2009, Justin Goodrich 08 Feb 2011
30. Goodrich J, Puangsomlee P, Martin M, Long D, Meyerowitz EM, Coupland G: A Polycomb-group gene regulates homeotic gene expression in Arabidopsis. Nature 1997, 386:44-51. (Pubitemid 27130913)
31. Carles CC, Lertpiriyapong K, Reville K, Fletcher JC: The ULTRAPETALA1 gene functions early in Arabidopsis development to restrict shoot apical meristem activity and acts through WUSCHEL to regulate floral meristem determinacy. Genetics 2004, 167:1893-903. (Pubitemid 39265925)
32. Alvarez-Venegas R, Pien S, Sadder M, Witmer X, Grossniklaus U, Avramova Z: ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes. Curr Biol 2003, 13:627-37. F1000 Factor 6 Evaluated by Marjori Matzke 05 Jun 2003
33. Alvarez-Venegas R, Avramova Z: Methylation patterns of histone H3 Lys 4, Lys 9 and Lys 27 in transcriptionally active and inactive Arabidopsis genes and in atx1 mutants. Nucleic Acids Res 2005, 33:5199-207.
34. Ito T, Sun B: Epigenetic regulation of developmental timing in floral stem cells. Epigenetics 2009, 4:564-7.
35. Kim DH, Zografos BR, Sung S: Vernalization-mediated VIN3 Induction Overcomes the LIKE-HETEROCHROMATIN PROTEIN1/POLYCOMB REPRESSION COMPLEX2-mediated epigenetic repression. Plant Physiol 2010, 154:949-57.
36. Finnegan J, Bond D, Buzas D, Goodrich J, Helliwell C, Tamada Y, Yun J, Amasino R, Dennis E: Polycomb proteins regulate the quantitative induction of VERNALIZATION INSENSITIVE 3 in response to low temperatures. Plant J 2011, 65:382-91.
37. Zhang X, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE: Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol 2007, 5:e129. F1000 Factor 10 Evaluated by Gregory Copenhaver 25 Apr 2007, Elizabeth Dennis 27 Apr 2007
38. Xu L, Shen WH: Polycomb silencing of KNOX genes confines shoot stem cell niches in Arabidopsis. Curr Biol 2008, 18:1966-71. F1000 Factor 6 Evaluated by Elena Alvarez-Buylla 22 Jan 2009
39. Zhao J, Ohsumi TK, Kung JT, Ogawa Y, Grau DJ, Sarma K, Song JJ, Kingston RE, Borowsky M, Lee JT: Genome-wide identification of polycomb-associated RNAs by RIP-seq. Mol Cell 2010, 40:939-53. F1000 Factor 8 Evaluated by Michael Cole 07 Mar 2011
40. Krajewski WA, Nakamura T, Mazo A, Canaani E: A motif within SET-domain proteins binds single-stranded nucleic acids and transcribed and supercoiled DNAs and can interfere with assembly of nucleosomes. Mol Cell Biol 2005, 25:1891-9. (Pubitemid 40280152)