메뉴 건너뛰기




Volumn 108, Issue 25, 2011, Pages 10115-10120

Isolation of an activator-dependent, promoter-specific chromatin remodeling factor

Author keywords

[No Author keywords available]

Indexed keywords

ACID PHOSPHATASE; ADENOSINE TRIPHOSPHATE; CHROMODOMAIN HELICASE DNA BINDING PROTEIN 1; DNA BINDING PROTEIN; NUCLEAR PROTEIN; PROTEIN PHO5; UNCLASSIFIED DRUG;

EID: 79959980161     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1101449108     Document Type: Article
Times cited : (17)

References (48)
  • 1
    • 0022799080 scopus 로고
    • Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements
    • Almer A, Rudolph H, Hinnen A, Horz W (1986) Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements. EMBO J 5:2689-2696.
    • (1986) EMBO J , vol.5 , pp. 2689-2696
    • Almer, A.1    Rudolph, H.2    Hinnen, A.3    Horz, W.4
  • 2
    • 0038094501 scopus 로고    scopus 로고
    • Nucleosomes unfold completely at a transcriptionally active promoter
    • DOI 10.1016/S1097-2765(03)00231-4
    • Boeger H, Griesenbeck J, Strattan JS, Kornberg RD (2003) Nucleosomes unfold completely at a transcriptionally active promoter. Mol Cell 11:1587-1598. (Pubitemid 36776544)
    • (2003) Molecular Cell , vol.11 , Issue.6 , pp. 1587-1598
    • Boeger, H.1    Griesenbeck, J.2    Strattan, J.S.3    Kornberg, R.D.4
  • 3
    • 4444299762 scopus 로고    scopus 로고
    • Formation of extrachromosomal DNA rings in Saccharomyces cerevisiae using site-specific recombination
    • Gartenberg MR (1999) Formation of extrachromosomal DNA rings in Saccharomyces cerevisiae using site-specific recombination. Methods Mol Biol 94:125-133.
    • (1999) Methods Mol Biol , vol.94 , pp. 125-133
    • Gartenberg, M.R.1
  • 4
    • 0344629430 scopus 로고    scopus 로고
    • Affinity Purification of Specific Chromatin Segments from Chromosomal Loci in Yeast
    • DOI 10.1128/MCB.23.24.9275-9282.2003
    • Griesenbeck J, Boeger H, Strattan JS, Kornberg RD (2003) Affinity purification of specific chromatin segments from chromosomal loci in yeast. Mol Cell Biol 23:9275-9282. (Pubitemid 37499814)
    • (2003) Molecular and Cellular Biology , vol.23 , Issue.24 , pp. 9275-9282
    • Griesenbeck, J.1    Boeger, H.2    Strattan, J.S.3    Kornberg, R.D.4
  • 5
    • 0023663417 scopus 로고
    • Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones
    • Lorch Y, LaPointe JW, Kornberg RD (1987) Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones. Cell 49:203-210.
    • (1987) Cell , vol.49 , pp. 203-210
    • Lorch, Y.1    LaPointe, J.W.2    Kornberg, R.D.3
  • 6
    • 0024261583 scopus 로고
    • Nucleosome loss activates yeast downstream promoters in vivo
    • DOI 10.1016/0092-8674(88)90258-9
    • Han M, Grunstein M (1988) Nucleosome loss activates yeast downstream promoters in vivo. Cell 55:1137-1145. (Pubitemid 19020066)
    • (1988) Cell , vol.55 , Issue.6 , pp. 1137-1145
    • Han, M.1    Grunstein, M.2
  • 7
    • 0027068143 scopus 로고
    • Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure
    • Hirschhorn JN, Brown SA, Clark CD, Winston F (1992) Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure. Genes Dev 6:2288-2298. (Pubitemid 23037395)
    • (1992) Genes and Development , vol.6 , Issue.12 A , pp. 2288-2298
    • Hirschhorn, J.N.1    Brown, S.A.2    Clark, C.D.3    Winston, F.4
  • 8
    • 0029848624 scopus 로고    scopus 로고
    • Chromatin structure and the regulation of gene expression: Remodeling at the MMTV promoter
    • Beato M (1996) Chromatin structure and the regulation of gene expression: Remodeling at the MMTV promoter. J Mol Med 74:711-724.
    • (1996) J Mol Med , vol.74 , pp. 711-724
    • Beato, M.1
  • 9
    • 0027258123 scopus 로고
    • Chromatin disruption in the promoter of human immunodeficiency virus type 1 during transcriptional activation
    • Verdin E, Paras P, Jr, Van Lint C (1993) Chromatin disruption in the promoter of human immunodeficiency virus type 1 during transcriptional activation. EMBO J 12:3249-3259. (Pubitemid 23232756)
    • (1993) EMBO Journal , vol.12 , Issue.8 , pp. 3249-3259
    • Verdin, E.1    Paras Jr., P.2    Van Lint, C.3
  • 10
    • 0036227306 scopus 로고    scopus 로고
    • The human beta-globin locus control region
    • Levings PP, Bungert J (2002) The human beta-globin locus control region. Eur J Biochem 269:1589-1599.
    • (2002) Eur J Biochem , vol.269 , pp. 1589-1599
    • Levings, P.P.1    Bungert, J.2
  • 11
    • 0031585394 scopus 로고    scopus 로고
    • Nucleosome transactions on the promoters of the yeast GAL and PHO genes
    • Lohr D (1997) Nucleosome transactions on the promoters of the yeast GAL and PHO genes. J Biol Chem 272:26795-26798.
    • (1997) J Biol Chem , vol.272 , pp. 26795-26798
    • Lohr, D.1
  • 12
    • 0030070466 scopus 로고    scopus 로고
    • Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDK complex
    • O'Neill EM, Kaffman A, Jolly ER, O'Shea EK (1996) Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDK complex. Science 271:209-212.
    • (1996) Science , vol.271 , pp. 209-212
    • O'Neill, E.M.1    Kaffman, A.2    Jolly, E.R.3    O'Shea, E.K.4
  • 14
    • 2942574467 scopus 로고    scopus 로고
    • Removal of promoter nucleosomes by disassembly rather than sliding in vivo
    • DOI 10.1016/j.molcel.2004.05.013, PII S1097276504002965
    • Boeger H, Griesenbeck J, Strattan JS, Kornberg RD (2004) Removal of promoter nucleosomes by disassembly rather than sliding in vivo. Mol Cell 14:667-673. (Pubitemid 38739088)
    • (2004) Molecular Cell , vol.14 , Issue.5 , pp. 667-673
    • Boeger, H.1    Griesenbeck, J.2    Strattan, J.S.3    Kornberg, R.D.4
  • 15
    • 0037414868 scopus 로고    scopus 로고
    • Regulation of chromatin remodeling by inositol polyphosphates
    • DOI 10.1126/science.1078062
    • Steger DJ, Haswell ES, Miller AL, Wente SR, O'Shea EK (2003) Regulation of chromatin remodeling by inositol polyphosphates. Science 299:114-116. (Pubitemid 36042415)
    • (2003) Science , vol.299 , Issue.5603 , pp. 114-116
    • Steger, D.J.1    Haswell, E.S.2    Miller, A.L.3    Wente, S.R.4    O'Shea, E.K.5
  • 16
    • 0030935280 scopus 로고    scopus 로고
    • RNA polymerase II holoenzyme recruitment is sufficient to remodel chromatin at the yeast PHO5 promoter
    • Gaudreau L, Schmid A, Blaschke D, Ptashne M, Horz W (1997) RNA polymerase II holoenzyme recruitment is sufficient to remodel chromatin at the yeast PHO5 promoter. Cell 89:55-62. (Pubitemid 27180585)
    • (1997) Cell , vol.89 , Issue.1 , pp. 55-62
    • Gaudreau, L.1    Schmid, A.2    Blaschke, D.3    Ptashne, M.4    Horz, W.5
  • 17
    • 0038185286 scopus 로고    scopus 로고
    • Multiple mechanistically distinct functions of SAGA at the PHO5 promoter
    • DOI 10.1128/MCB.23.10.3468-3476.2003
    • Barbaric S, Reinke H, Horz W (2003) Multiple mechanistically distinct functions of SAGA at the PHO5 promoter. Mol Cell Biol 23:3468-3476. (Pubitemid 36539179)
    • (2003) Molecular and Cellular Biology , vol.23 , Issue.10 , pp. 3468-3476
    • Barbaric, S.1    Reinke, H.2    Horz, W.3
  • 18
    • 3342979659 scopus 로고    scopus 로고
    • Recruitment of the NuA4 complex poises the PHO5 promoter for chromatin remodeling and activation
    • DOI 10.1038/sj.emboj.7600230
    • Nourani A, Utley RT, Allard S, Cote J (2004) Recruitment of the NuA4 complex poises the PHO5 promoter for chromatin remodeling and activation. EMBO J 23:2597-2607. (Pubitemid 38988231)
    • (2004) EMBO Journal , vol.23 , Issue.13 , pp. 2597-2607
    • Nourani, A.1    Utley, R.T.2    Allard, S.3    Cote, J.4
  • 19
    • 2942550662 scopus 로고    scopus 로고
    • Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes
    • DOI 10.1016/j.molcel.2004.05.016, PII S1097276504003004
    • Adkins MW, Howar SR, Tyler JK (2004) Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes. Mol Cell 14:657-666. (Pubitemid 38739087)
    • (2004) Molecular Cell , vol.14 , Issue.5 , pp. 657-666
    • Adkins, M.W.1    Howar, S.R.2    Tyler, J.K.3
  • 21
    • 0033524939 scopus 로고    scopus 로고
    • Histone octamer transfer by a chromatin-remodeling complex
    • DOI 10.1016/S0092-8674(00)80551-6
    • Lorch Y, Zhang M, Kornberg RD (1999) Histone octamer transfer by a chromatin-remodeling complex. Cell 96:389-392. (Pubitemid 29077592)
    • (1999) Cell , vol.96 , Issue.3 , pp. 389-392
    • Lorch, Y.1    Zhang, M.2    Kornberg, R.D.3
  • 22
    • 0025354922 scopus 로고
    • Functional domains of a positive regulatory protein, PHO4, for transcriptional control of the phosphatase regulon in Saccharomyces cerevisiae
    • Ogawa N, Oshima Y (1990) Functional domains of a positive regulatory protein, PHO4, for transcriptional control of the phosphatase regulon in Saccharomyces cerevisiae. Mol Cell Biol 10:2224-2236.
    • (1990) Mol Cell Biol , vol.10 , pp. 2224-2236
    • Ogawa, N.1    Oshima, Y.2
  • 23
    • 0027948986 scopus 로고
    • The transactivation domain of Pho4 is required for nucleosome disruption at the PHO5 promoter
    • Svaren J, Schmitz J, Horz W (1994) The transactivation domain of Pho4 is required for nucleosome disruption at the PHO5 promoter. EMBO J 13:4856-4862. (Pubitemid 24319368)
    • (1994) EMBO Journal , vol.13 , Issue.20 , pp. 4856-4862
    • Svaren, J.1    Schmitz, J.2    Horz, W.3
  • 24
    • 0034657071 scopus 로고    scopus 로고
    • The chrome domain protein Chd1p from budding yeast is an ATP-dependent chromatin-modifying factor
    • Tran HG, Steger DJ, Iyer VR, Johnson AD (2000) The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor. EMBO J 19:2323-2331. (Pubitemid 30259013)
    • (2000) EMBO Journal , vol.19 , Issue.10 , pp. 2323-2331
    • Tran, H.G.1    Steger, D.J.2    Iyer, V.R.3    Johnson, A.D.4
  • 25
    • 79961029775 scopus 로고    scopus 로고
    • Selective Removal of Promoter Nucleosomes by the RSC Chromatin Remodeling Complex
    • in press
    • Lorch Y, et al. Selective Removal of Promoter Nucleosomes by the RSC Chromatin Remodeling Complex. Nat Struct Mol Biol, in press.
    • Nat Struct Mol Biol
    • Lorch, Y.1
  • 26
    • 0015578109 scopus 로고
    • Isolation and characterization of acid phosphatase mutants in Saccharomyces cerevisiae
    • To EA, Ueda Y, Kakimoto SI, Oshima Y (1973) Isolation and characterization of acid phosphatase mutants in Saccharomyces cerevisiae. J Bacteriol 113:727-738.
    • (1973) J Bacteriol , vol.113 , pp. 727-738
    • To, E.A.1    Ueda, Y.2    Kakimoto, S.I.3    Oshima, Y.4
  • 27
  • 28
    • 0033558873 scopus 로고    scopus 로고
    • Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae
    • Tsukiyama T, Palmer J, Landel CC, Shiloach J, Wu C (1999) Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae. Genes Dev 13:686-697. (Pubitemid 29155975)
    • (1999) Genes and Development , vol.13 , Issue.6 , pp. 686-697
    • Tsukiyama, T.1    Palmer, J.2    Landel, C.C.3    Shiloach, J.4    Wu, C.5
  • 29
    • 33645067395 scopus 로고    scopus 로고
    • The ISWI and CHD1 chromatin remodelling activities influence ADH2 expression and chromatin organization
    • Xella B, Goding C, Agricola E, Di Mauro E, Caserta M (2006) The ISWI and CHD1 chromatin remodelling activities influence ADH2 expression and chromatin organization. Mol Microbiol 59:1531-1541.
    • (2006) Mol Microbiol , vol.59 , pp. 1531-1541
    • Xella, B.1    Goding, C.2    Agricola, E.3    Di Mauro, E.4    Caserta, M.5
  • 30
    • 0038246285 scopus 로고    scopus 로고
    • Polyphosphate loss promotes SNF/SWI- and Gcn5-dependent mitotic induction of PHO5
    • DOI 10.1128/MCB.23.11.3788-3797.2003
    • Neef DW, Kladde MP (2003) Polyphosphate loss promotes SNF/SWI- and Gcn5-dependent mitotic induction of PHO5. Mol Cell Biol 23:3788-3797. (Pubitemid 36597459)
    • (2003) Molecular and Cellular Biology , vol.23 , Issue.11 , pp. 3788-3797
    • Neef, D.W.1    Kladde, M.P.2
  • 31
    • 0037214318 scopus 로고    scopus 로고
    • Yeast Isw1p forms two separable complexes in vivo
    • Vary JC, Jr, et al. (2003) Yeast Isw1p forms two separable complexes in vivo. Mol Cell Biol 23:80-91.
    • (2003) Mol Cell Biol , vol.23 , pp. 80-91
    • Vary Jr., J.C.1
  • 32
    • 0026452218 scopus 로고
    • Reconstitution of transcription with five purified initiation factors and RNA polymerase II from Saccharomyces cerevisiae
    • Sayre MH, Tschochner H, Kornberg RD (1992) Reconstitution of transcription with five purified initiation factors and RNA polymerase II from Saccharomyces cerevisiae. J Biol Chem 267:23376-23382.
    • (1992) J Biol Chem , vol.267 , pp. 23376-23382
    • Sayre, M.H.1    Tschochner, H.2    Kornberg, R.D.3
  • 34
    • 36249027156 scopus 로고    scopus 로고
    • Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
    • Sims RJ, 3rd, et al. (2007) Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol Cell 28:665-676.
    • (2007) Mol Cell , vol.28 , pp. 665-676
    • Sims III, R.J.1
  • 36
    • 68949164755 scopus 로고    scopus 로고
    • Chd1 regulates open chromatin and pluripotency of embryonic stem cells
    • Gaspar-Maia A, et al. (2009) Chd1 regulates open chromatin and pluripotency of embryonic stem cells. Nature 460:863-868.
    • (2009) Nature , vol.460 , pp. 863-868
    • Gaspar-Maia, A.1
  • 37
    • 33745221438 scopus 로고    scopus 로고
    • Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes
    • Stockdale C, Flaus A, Ferreira H, Owen-Hughes T (2006) Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes. J Biol Chem 281:16279-16288.
    • (2006) J Biol Chem , vol.281 , pp. 16279-16288
    • Stockdale, C.1    Flaus, A.2    Ferreira, H.3    Owen-Hughes, T.4
  • 38
    • 34250831538 scopus 로고    scopus 로고
    • A genome-wide role for CHD remodelling factors and Nap1 in nucleosome disassembly
    • DOI 10.1038/sj.emboj.7601728, PII 7601728
    • Walfridsson J, Khorosjutina O, Matikainen P, Gustafsson CM, Ekwall K (2007) A genome-wide role for CHD remodelling factors and Nap1 in nucleosome disassembly. EMBO J 26:2868-2879. (Pubitemid 46975778)
    • (2007) EMBO Journal , vol.26 , Issue.12 , pp. 2868-2879
    • Walfridsson, J.1    Khorosjutina, O.2    Matikainen, P.3    Gustafsson, C.M.4    Ekwall, K.5
  • 39
    • 0023651661 scopus 로고
    • The sequence of the Saccharomyces cerevisiae gene PHO2 codes for a regulatory protein with unusual aminoacid composition
    • Sengstag C, Hinnen A (1987) The sequence of the Saccharomyces cerevisiae gene PHO2 codes for a regulatory protein with unusual aminoacid composition. Nucleic Acids Res 15:233-246.
    • (1987) Nucleic Acids Res , vol.15 , pp. 233-246
    • Sengstag, C.1    Hinnen, A.2
  • 40
    • 0036270543 scopus 로고    scopus 로고
    • Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method
    • DOI 10.1016/S0076-6879(02)50957-5
    • Gietz RD, Woods RA (2002) Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol 350:87-96. (Pubitemid 34619485)
    • (2002) Methods in Enzymology , vol.350 , pp. 87-96
    • Gietz, R.D.1    Woods, R.A.2
  • 41
    • 0032775010 scopus 로고    scopus 로고
    • Epitope tagging of yeast genes using a PCR-based strategy: More tags and improved practical routines
    • Knop M, et al. (1999) Epitope tagging of yeast genes using a PCR-based strategy: More tags and improved practical routines. Yeast 15:963-972.
    • (1999) Yeast , vol.15 , pp. 963-972
    • Knop, M.1
  • 43
    • 0025354335 scopus 로고
    • Accurate initiation by RNA polymerase II in a whole cell extract from Saccharomyces cerevisiae
    • Woontner M, Jaehning JA (1990) Accurate initiation by RNA polymerase II in a whole cell extract from Saccharomyces cerevisiae. J Biol Chem 265:8979-8982.
    • (1990) J Biol Chem , vol.265 , pp. 8979-8982
    • Woontner, M.1    Jaehning, J.A.2
  • 46
    • 0025316464 scopus 로고
    • Resolution of factors required for the initiation of transcription by yeast RNA polymerase II
    • Flanagan PM, et al. (1990) Resolution of factors required for the initiation of transcription by yeast RNA polymerase II. J Biol Chem 265:11105-11107.
    • (1990) J Biol Chem , vol.265 , pp. 11105-11107
    • Flanagan, P.M.1
  • 48
    • 0030272212 scopus 로고    scopus 로고
    • Signaling phosphate starvation
    • DOI 10.1016/0968-0004(96)10048-7
    • Lenburg ME, O'Shea EK (1996) Signaling phosphate starvation. Trends Biochem Sci 21:383-387. (Pubitemid 26338675)
    • (1996) Trends in Biochemical Sciences , vol.21 , Issue.10 , pp. 383-387
    • Lenburg, M.E.1    O'Shea, E.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.