Effects of xylan and starch on secretome of the basidiomycete Phanerochaete chrysosporium grown on cellulose

FEMS Microbiology Letters

Volumn 321, Issue 1, 2011, Pages 14-23

  Hori, Chiaki ^a   Igarashi, Kiyohiko ^a   Katayama, Akira ^b   Samejima, Masahiro ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b NIPPON MEDICAL SCHOOL   (Japan)

Author keywords

Biomass; Cellobiose dehydrogenase; Glycoside hydrolase; Phanerochaete chrysosporium; Secretome

Indexed keywords

CELL ENZYME; CELL PROTEIN; CELLOBIOSE QUINONE OXIDOREDUCTASE; CELLULASE; CELLULOSE; ESTERASE; FUNGAL PROTEIN; GLUCURONOYL ESTERASE; GLYCOSIDASE; STARCH; UNCLASSIFIED DRUG; XYLAN; XYLAN ENDO 1,3 BETA XYLOSIDASE;

ARTICLE; BASIDIOMYCETES; CARBOHYDRATE SYNTHESIS; CELL WALL; CONTROLLED STUDY; ENZYME SYNTHESIS; FUNGAL BIOMASS; FUNGAL METABOLISM; FUNGUS GROWTH; LIQUID CHROMATOGRAPHY; MYCELIAL GROWTH; NONHUMAN; PHANEROCHAETE; PLANT CELL; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN SYNTHESIS; SECRETORY PATHWAY; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL ELECTROPHORESIS;

CELLULOSE; FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; HYDROLASES; PHANEROCHAETE; PROTEOME; STARCH; XYLANS;

FUNGI; PHANEROCHAETE CHRYSOSPORIUM;

EID: 79959976450     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2011.02307.x     Document Type: Article

References (39)

1. Abbas A, Koc H, Liu F & Tien M (2005) Fungal degradation of wood: initial proteomic analysis of extracellular proteins of Phanerochaete chrysosporium grown on oak substrate. Curr Genet 47: 49-56.
2. Broda P, Birch P, Brooks P, Copa-Patiño J, Sinnott M, Tempelaars C, Wang Q, Wyatt A & Sims P (1994) Phanerochaete chrysosporium and its natural substrate. FEMS Microbiol Rev 13: 189-195.
3. Broda P, Birch P, Brooks P & Sims P (1995) PCR-mediated analysis of lignocellulolytic gene transcription by Phanerochaete chrysosporium: substrate-dependent differential expression within gene families. Appl Environ Microb 61: 2358-2364.
4. Broda P, Birch PR, Brooks PR & Sims PF (1996) Lignocellulose degradation by Phanerochaete chrysosporium: gene families and gene expression for a complex process. Mol Microbiol 19: 923-932.
5. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V & Henrissat B (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res 37: D233-D238.
6. Dobozi MS, Szakács G & Bruschi CV (1992) Xylanase activity of Phanerochaete chrysosporium. Appl Environ Microb 58: 3466-3471.
7. Dumonceaux T, Bartholomew K, Valeanu L, Charles T & Archibald F (2001) Cellobiose dehydrogenase is essential for wood invasion and nonessential for kraft pulp delignification by Trametes versicolor. Enzyme Microb Tech 29: 478-489.
8. Duranová M, Spániková S, Wösten HA, Biely P & de Vries RP (2009) Two glucuronoyl esterases of Phanerochaete chrysosporium. Arch Microbiol 191: 133-140.
9. Eriksson KE, Pettersson B & Westermark U (1974) Oxidation: an important enzyme reaction in fungal degradation of cellulose. FEBS Lett 49: 282-285.
10. Eriksson K-EL, Blanchette RA & Ander P (1990) Microbial and Enzymatic Degradation of Wood and Wood Components. Springer-Verlag, Berlin.
11. Hames BR (2009) Biofuels methods and protocols. Methods in Molecular Biology, Vol. 581 (Jonathan RM, ed), pp. 145-167. Humana Press, New York.
12. Harris PV, Welner D, Mcfarland KC et al. (2010) Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family. Biochemistry 49: 3305-3316.
13. Henriksson G, Johansson G & Pettersson G (2000) A critical review of cellobiose dehydrogenases. J Biotechnol 78: 93-113.
14. Igarashi K, Samejima M & Eriksson KEL (1998) Cellobiose dehydrogenase enhances Phanerochaete chrysosporium cellobiohydrolase I activity by relieving product inhibition. Eur J Biochem 253: 101-106.
15. Igarashi K, Ishida T, Hori C & Samejima M (2008) Characterization of an endoglucanase belonging to a new subfamily of glycoside hydrolase family 45 of the basidiomycete Phanerochaete chrysosporium. Appl Environ Microb 74: 5628-5634.
16. Johnsrud SC & Eriksson KE (1985) Cross-breeding of selected and mutated homokaryotic strains of Phanerochaete chrysosporium K-3 - new cellulase deficient strains with increased ability to degrade lignin. Appl Microbiol Biot 21: 320-327.
17. Karkehabadi S, Hansson H, Kim S, Piens K, Mitchinson C & Sandgren M (2008) The first structure of a glycoside hydrolase family 61 member, Cel61B from Hypocrea jecorina, at 1.6Å resolution. J Mol Biol 383: 144-154.
18. Kersten P & Cullen D (2007) Extracellular oxidative systems of the lignin-degrading basidiomycete Phanerochaete chrysosporium. Fungal Genet Biol 44: 77-87.
19. Keshwani D & Cheng J (2009) Switchgrass for bioethanol and other value-added applications: a review. Bioresource Technol 100: 1515-1523.
20. Kremer SM & Wood PM (1992) Evidence that cellobiose oxidase from Phanreochaete chrysosporium is primarily an Fe(III) reductase - kinetic comparison with neutrophil NADPH oxidase and yeast flavocytochrome b2. Eur J Biochem 205: 133-138.
21. Levasseur A, Piumi F, Coutinho PM, Rancurel C, Asther M, Delattre M, Henrissat B, Pontarotti P, Asther M & Record E (2008) FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds. Fungal Genet Biol 45: 638-645.
22. Lever M (1972) New reaction for colorimetric determination of carbohydrates. Anal Biochem 47: 273-279.
23. Li B, Nagalla SR & Renganathan V (1996) Cloning of a cDNA encoding cellobiose dehydrogenase, a hemoflavoenzyme from Phanerochaete chrysosporium. Appl Environ Microb 62: 1329-1335.
24. Martinez D, Larrondo LF, Putnam N et al. (2004) Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat Biotechnol 22: 695-700.
25. McNeil M, Darvill AG, Fry SC & Albercheim P (1984) Structure and function of the primary cell walls of plants. Annu Rev Biochem 53: 625-663.
26. Park JY, Seyama T, Shiroma R, Ike M, Srichuwong S, Nagata K, Arai-Sanoh Y, Kondo M & Tokuyasu K (2009) Efficient recovery of glucose and fructose via enzymatic saccharification of rice straw with soft carbohydrates. Biosci Biotech Bioch 73: 1072-1077.
27. Ravalason H, Jan G, Mollé D et al. (2008) Secretome analysis of Phanerochaete chrysosporium strain CIRM-BRFM41 grown on softwood. Appl Microbiol Biot 80: 719-733.
28. Sato S, Liu F, Koc H & Tien M (2007) Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates. Microbiology 153: 3023-3033.
29. Shao Q, Chundawat S, Krishnan C, Bals B, Sousa L, Thelen K, Dale B & Balan V (2010) Enzymatic digestibility and ethanol fermentability of AFEX-treated starch-rich lignocellulosics such as corn silage and whole corn plant. Biotechnol Biofuels 3: 12.
30. Suzuki H, Igarashi K & Samejima M (2009) Quantitative transcriptional analysis of the genes encoding glycoside hydrolase family 7 cellulase isozymes in the basidiomycete Phanerochaete chrysosporium. FEMS Microbiol Lett 299: 159-165.
31. Suzuki H, Igarashi K & Samejima M (2010) Cellotriose and cellotetraose as inducers of the genes encoding cellobiohydrolases in the basidiomycete Phanerochaete chrysosporium. Appl Environ Microb 76: 6164-6170.
32. Tempelaars CA, Birch PR, Sims PF & Broda P (1994) Isolation, characterization, and analysis of the expression of the cbhII gene of Phanerochaete chrysosporium. Appl Environ Microb 60: 4387-4393.
33. Vaaje-Kolstad G, Westereng B, Horn SJ, Liu Z, Zhai H, Sørlie M & Eijsink VGH (2010) An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides. Science 330: 219-222.
34. Vallim MA, Janse BJH, Gaskell J, Pizzirani-Kleiner AA & Cullen D (1998) Phanerochaete chrysosporium cellobiohydrolase and cellobiose dehydrogenase transcripts in wood. Appl Environ Microb 64: 1924-1928.
35. Vanden Wymelenberg A, Sabat G, Martinez D, Rajangam AS, Teeri TT, Gaskell J, Kersten PJ & Cullen D (2005) The Phanerochaete chrysosporium secretome: database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium. J Biotechnol 118: 17-34.
36. Vanden Wymelenberg A, Minges P, Sabat G et al. (2006) Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins. Fungal Genet Biol 43: 343-356.
37. Vanden Wymelenberg A, Gaskell J, Mozuch M, Kersten P, Sabat G, Martinez D & Cullen D (2009) Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression. Appl Environ Microb 75: 4058-4068.
38. Yoon JJ, Igarashi K, Kajisa T & Samejima M (2006) Purification, identification and molecular cloning of glycoside hydrolase family 15 glucoamylase from the brown-rot basidiomycete Fomitopsis palustris. FEMS Microbiol Lett 259: 288-294.
39. Yoshida M, Igarashi K, Kawai R, Aida K & Samejima M (2004) Differential transcription of beta-glucosidase and cellobiose dehydrogenase genes in cellulose degradation by the basidiomycete Phanerochaete chrysosporium. FEMS Microbiol Lett 235: 177-182.