Label-free protein profiling of adipose-derived human stem cells under hyperosmotic treatment

Journal of Proteome Research

Volumn 10, Issue 7, 2011, Pages 3050-3059

  Oswald, Elizabeth S ^a   Brown, Lewis M ^b   Bulinski, J Chloeì ^b   Hung, Clark T ^a  

^a Fairchild Center ^*  (United States)

^b Och Spine at New York Presbyterian Hospitals   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

5' NUCLEOTIDASE; ALDEHYDE REDUCTASE; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; TRANSGELIN;

ADIPOSE DERIVED STEM CELL; AMINO ACID SEQUENCE; ARTICLE; CELL GROWTH; CELLULAR STRESS RESPONSE; CHONDROGENESIS; CONTROLLED STUDY; ELECTRIC POTENTIAL; HUMAN; HUMAN CELL; HYPEROSMOTIC STRESS; MULTIPOTENT STEM CELL; PHENOTYPE; PRIORITY JOURNAL; PROCESS OPTIMIZATION; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS;

5'-NUCLEOTIDASE; ADIPOCYTES; ADIPOSE TISSUE; ADULT STEM CELLS; CARTILAGE; CELL DIFFERENTIATION; CELLS, CULTURED; CHONDROCYTES; CHONDROGENESIS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DATA MINING; GENE EXPRESSION PROFILING; HUMANS; MASS SPECTROMETRY; MICROFILAMENT PROTEINS; MULTIPOTENT STEM CELLS; MUSCLE PROTEINS; OSMOLAR CONCENTRATION; OSMOTIC PRESSURE; PROTEOMICS; TISSUE ENGINEERING;

EID: 79959976223     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr200030v     Document Type: Article

References (46)

1. Estes, B. T.; Diekman, B. O.; Guilak, F. Monolayer cell expansion conditions affect the chondrogenic potential of adipose-derived stem cells Biotechnol. Bioeng. 2008, 99 (4) 986-995 (Pubitemid 351316640)
2. Lima, E. G.; Bian, L.; Ng, K. W.; Mauck, R. L.; Byers, B. A.; Tuan, R. S.; Ateshian, G. A.; Hung, C. T. The beneficial effect of delayed compressive loading on tissue-engineered cartilage constructs cultured with TGF-B3 Osteoarthritis Cartilage 2007, 15 (9) 1025-1033 (Pubitemid 47387037)
3. Selmi, T. A.; Verdonk, P. C. M.; Chambat, P.; Dubrana, F.; Potel, J. F.; Barnouin, L.; Neyret, P. Autologous chondrocyte implantation in a novel alginate-agarose hydrogel: outcome at two years J. Bone Jt. Surg. 2008, 90 (5) 597-604 (Pubitemid 351685004)
4. Lammi, M. J.; Hayrinen, J.; Mahonen, A. Proteomic analysis of cartilage- and bone-associated samples Electrophoresis 2006, 27 (13) 2687-2701 (Pubitemid 44057520)
5. Ruiz-Romero, C.; Lopez-Armada, M. J.; Blanco, F. J. Proteomic characterization of human normal articular chondrocytes: a novel tool for the study of osteoarthritis and other rheumatic diseases Proteomics 2005, 5 (12) 3048-3059 (Pubitemid 41176471)
6. Lambrecht, S.; Verbruggen, G.; Verdonk, P. C.; Elewaut, D.; Deforce, D. Differential proteome analysis of normal and osteoarthritic chondrocytes reveals distortion of vimentin network in osteoarthritis Osteoarthritis Cartilage 2008, 16 (2) 163-173 (Pubitemid 351218181)
7. Ruiz-Romero, C.; Calamia, V.; Mateos, J.; Carreira, V.; Martinez-Gomariz, M.; Fernandez, M.; Blanco, F. J. Mitochondrial dysregulation of osteoarthritic human articular chondrocytes analyzed by proteomics: a decrease in mitochondrial superoxide dismutase points to a redox imbalance Mol. Cell. Proteomics 2009, 8 (1) 172-189
8. Ruiz-Romero, C.; Calamia, V.; Rocha, B.; Mateos, J.; Fernandez-Puente, P.; Blanco, F. J. Hypoxia conditions differentially modulate human normal and osteoarthritic chondrocyte proteomes J. Proteome Res. 2010, 9 (6) 3035-3045
9. Lambrecht, S.; Dhaenens, M.; Almqvist, F.; Verdonk, P.; Verbruggen, G.; Deforce, D.; Elewaut, D. Proteome characterization of human articular chondrocytes leads to novel insights in the function of small heat-shock proteins in chondrocyte homeostasis Osteoarthritis Cartilage 2010, 18 (3) 440-446
10. Piltti, J.; Hayrinen, J.; Karjalainen, H. M.; Lammi, M. J. Proteomics of chondrocytes with special reference to phosphorylation changes of proteins in stretched human chondrosarcoma cells Biorheology 2008, 45 (3-4) 323-335
11. Wilson, R.; Belluoccio, D.; Little, C. B.; Fosang, A. J.; Bateman, J. F. Proteomic Characterization of Mouse Cartilage Degradation In Vitro Arthritis Rheumatism 2008, 58 (10) 3120-3131
12. Silva, J. C.; Denny, R.; Dorschel, C.; Gorenstein, M. V.; Li, G. Z.; Richardson, K.; Wall, D.; Geromanos, S. J. Simultaneous qualitative and quantitative analysis of the Escherichia coli Proteome-A sweet tale Mol. Cell. Proteomics 2006, 5 (4) 589-607
13. Ma, D.; Chan, M. K.; Lockstone, H. E.; Pietsch, S. R.; Jones, D. N. C.; Cilia, J.; Hill, M. D.; Robbins, M. J.; Benzel, I. M.; Umrania, Y.; Guest, P. C.; Levin, Y.; Maycox, P. R.; Bahn, S. Antipsychotic treatment alters protein expression associated with presynaptic function and nervous system development in rat frontal cortex J. Proteome Res. 2009, 8 (7) 3284-3297
14. Xu, D. M.; Suenaga, N.; Edelmann, M. J.; Fridman, R.; Muschel, R. J.; Kessler, B. M. Novel MMP-9 substrates in cancer cells revealed by a label-free quantitative proteomics approach Mol. Cell. Proteomics 2008, 7 (11) 2215-2228
15. Chambery, A.; Vissers, J. P. C.; Langridge, J. I.; Lonardo, E.; Minchiotti, G.; Ruvo, M.; Parente, A. Qualitative and quantitative proteomic profiling of Cripto(-/-) embryonic stem cells by means of accurate mass LC-MS analysis J. Proteome Res. 2009, 8 (2) 1047-1058
16. Lo Turco, E. G.; Souza, G.; Garcia, J. S.; Ferreira, C. R.; Eberlin, M. N.; Bertolla, R. P. Effect of endometriosis on the protein expression pattern of follicular fluid from patients submitted to controlled ovarian hyperstimulation for in vitro fertilization Hum. Reprod. 2010, 25 (7) 1755-1766
17. Rower, C.; Vissers, J. P. C.; Koy, C.; Kipping, M.; Hecker, M.; Reimer, T.; Gerber, B.; Thiesen, H. J.; Glocker, M. O. Towards a proteome signature for invasive ductal breast carcinoma derived from label-free nanoscale LC-MS protein expression profiling of tumorous and glandular tissue Anal. Bioanal. Chem. 2009, 395 (8) 2443-2456
18. Patel, V. J.; Thalassinos, K.; Slade, S. E.; Connolly, J. B.; Crombie, A.; Murrell, J. C.; Scrivens, J. H. A comparison of labeling and label-free mass spectrometry-based proteomics approaches J. Proteome Res. 2009, 8 (7) 3752-3759
19. Chambery, A.; Colucci-Damato, L.; Vissers, J. P. C.; Scarpella, S.; Langridge, J. I.; Parente, A. Proteomic profiling of proliferating and differentiated neural mes-c-myc A1 cell line from mouse embryonic mesencephalon by LC-MS J. Proteome Res. 2009, 8 (1) 227-238
20. Cheng, F. Y.; Blackburn, K.; Lin, Y. M.; Goshe, M. B.; Williamson, J. D. Absolute protein quantification by LC/MSE for global analysis of salicylic acid-induced plant protein secretion responses J. Proteome Res. 2009, 8 (1) 82-93
21. Blackburn, K.; Mbeunkui, F.; Mitra, S. K.; Mentzel, T.; Goshe, M. B. Improving protein and proteome coverage through data-independent multiplexed peptide fragmentation J. Proteome Res. 2010, 9 (7) 3621-3637
22. Oswald, E. S.; Chao, P. H. G.; Bulinski, J. C.; Ateshian, G. A.; Hung, C. T. Dependence of zonal chondrocyte water transport properties on osmotic environment Cell. Mol. Bioeng. 2008, 1 (4) 339-348
23. Bian, L.; Fong, J. V.; Lima, E. G.; Stoker, A. M.; Ateshian, G. A.; Cook, J. L.; Hung, C. T. Dynamic mechanical loading enhances functional properties of tissue-engineered cartilage using mature canine chondrocytes Tissue Eng. Part A 2010, 16 (5) 1781-1790
24. Wessel, D.; Flugge, U. I. A Method For The Quantitative Recovery Of Protein In Dilute-Solution In The Presence Of Detergents And Lipids Anal. Biochem. 1984, 138 (1) 141-143 (Pubitemid 14146660)
25. Keller, A.; Nesvizhskii, A. I.; Kolker, E.; Aebersold, R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal. Chem. 2002, 74 (20) 5383-92 (Pubitemid 35215372)
26. Dai, H. Y.; Meyer, M.; Stepaniants, S.; Ziman, M.; Stoughton, R. Use of hybridization kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays Nucleic Acids Res. 2002, 30 (16) e86
27. Weng, L.; Dai, H.; Zhan, Y.; He, Y.; Stepaniants, S. B.; Bassett, D. E. Rosetta error model for gene expression analysis Bioinformatics 2006, 22 (9) 1111-1121
28. Huang, D. W.; Sherman, B. T.; Lempicki, R. A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009, 37 (1), 1 - 13.
29. Kanehisa, M.; Goto, S. KEGG: Kyoto Encyclopedia of Genes and Genomes Nucleic Acids Res. 2000, 28 (1) 27-30 (Pubitemid 30047706)
30. Jain, E.; Bairoch, A.; Duvaud, S.; Phan, I.; Redaschi, N.; Suzek, B. E.; Martin, M. J.; McGarvey, P.; Gasteiger, E. Infrastructure for the life sciences: design and implementation of the UniProt website BMC Bioinform. 2009, 10, 136
31. Hoffmann, E. K.; Lambert, I. H.; Pedersen, S. F. Physiology of cell volume regulation in vertebrates Physiol. Rev. 2009, 89 (1) 193-277
32. Del Corso, A.; Cappiello, M.; Mura, U. From a dull enzyme to something else: Facts and perspectives regarding aldose reductase Curr. Med. Chem. 2008, 15 (15) 1452-1461 (Pubitemid 351997778)
33. Ko, B. C. B.; Ruepp, B.; Bohren, K. M.; Gabbay, K. H.; Chung, S. S. M. Identification and characterization of multiple osmotic response sequences in the human aldose reductase gene J. Biol. Chem. 1997, 272 (26) 16431-16437 (Pubitemid 27276469)
34. Klawitter, J.; Rivard, C. J.; Brown, L. M.; Capasso, J. M.; Almeida, N. E.; Maunsbach, A. B.; Pihakaski-Maunsbach, K.; Berl, T.; Leibfritz, D.; Christians, U.; Chan, L. A metabonomic and proteomic analysis of changes in IMCD3 cells chronically adapted to hypertonicity Nephron. Physiol. 2008, 109 (1) p1-10
35. Koo, J.; Kim, K. I.; Min, B. H.; Lee, G. M. Differential protein expression in human articular chondrocytes expanded in serum-free media of different medium osmolalities by DIGE J. Proteome Res. 2010, 9 (5) 2480-2487
36. Wilson, R.; Diseberg, A. F.; Gordon, L.; Zivkovic, S.; Tatarczuch, L.; Mackie, E. J.; Gorman, J. J.; Bateman, J. F. Comprehensive profiling of cartilage extracellular matrix formation and maturation using sequential extraction and label-free quantitative proteomics Mol. Cell. Proteomics 2010, 9 (6) 1296-1313
37. Lou, H.; Du, S. Y.; Ji, Q.; Stolz, A. Induction of AKR1C2 by phase II inducers: Identification of a distal consensus antioxidant response element regulated by NRF2 Mol. Pharmacol. 2006, 69 (5) 1662-1672
38. Blouin, K.; Veilleux, A.; Luu-The, V.; Tchernof, A. Androgen metabolism in adipose tissue: Recent advances Mol. Cell. Endocrinol. 2009, 301 (1-2) 97-103
39. Penning, T. M.; Drury, J. E. Human aldo-keto reductases: Function, gene regulation, and single nucleotide polymorphisms Arch. Biochem. Biophys. 2007, 464 (2) 241-250 (Pubitemid 47214569)
40. Xie, X. T.; Yi, Z. P.; Bowen, B.; Wolf, C.; Flynn, C. R.; Sinha, S.; Mandarino, L. J.; Meyer, C. Characterization of the human adipocyte proteome and reproducibility of protein abundance by one-dimensional gel electrophoresis and HPLC-ESI-MS/MS J. Proteome Res. 2010, 9 (9) 4521-4534
41. Xiao, L. P.; Naganawa, T.; Obugunde, E.; Gronowicz, G.; Ornitz, D. M.; Coffin, J. D.; Hurley, M. M. Stat1 controls postnatal bone formation by regulating fibroblast growth factor signaling in osteoblasts J. Biol. Chem. 2004, 279 (26) 27743-27752 (Pubitemid 38812616)
42. Krejci, P.; Prochazkova, J.; Bryja, V.; Jelinkova, P.; Pejchalova, K.; Kozubik, A.; Thompson, L. M.; Wilcox, W. R. Fibroblast growth factor inhibits interferon gamma-STAT1 and interleukin 6-STAT3 signaling in chondrocytes Cell. Signalling 2009, 21 (1) 151-160
43. Staal, G. E. J.; Rijksen, G. Regulation of pyruvate kinase in normal and pathological conditions. In Regulation of carbohydrate metabolism; Beitner, R., Ed.; CRC Press: Boca Raton, FL, 1985; Vol. I, pp 143-159.
44. Imamura, K.; Noguchi, T.; Tanaka, T. Regulation of isozyme patterns of pyruvate kinase in normal and neoplastic tissues. In Markers of human neuroectodermal tumors; Staal, G.; van Veelen, C., Eds.; CRC Press: Boca Raton, FL, 1986; pp 191-222.
45. Zaia, J.; Liu, B. S.; Boynton, R.; Barry, F. Structural analysis of cartilage proteoglycans and glycoproteins using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Anal. Biochem. 2000, 277 (1) 94-103 (Pubitemid 30041764)
46. Huang, A. H.; Farrell, M. J.; Mauck, R. L. Mechanics and mechanobiology of mesenchymal stem cell-based engineered cartilage J. Biomech. 2010, 43 (1) 128-136