Characterization of plant-growth-promoting traits of Acinetobacter species isolated from rhizosphere of Pennisetum glaucum

Journal of Microbiology and Biotechnology

Volumn 21, Issue 6, 2011, Pages 556-566

  Farokh, Rokhbakhsh Zamin ^a   Sachdev, Dhara ^a   Pour, Nadia Kazemi ^a   Engineer, Anupama ^b   Pardesi, Karishma R ^a   Zinjarde, Smita ^a   Dhakephalkar, Prashant K ^b   Chopade, Balu A ^a  

^a UNIVERSITY OF PUNE   (India)

^b AGHARKAR RESEARCH INSTITUTE   (India)

Author keywords

Acinetobacter; Mineral solubilization; Pennisetum glaucum; Plant growth promoting rhizobacteria; Pot experiment; Siderophore

Indexed keywords

SIDEROPHORE;

ACINETOBACTER; ACINETOBACTER BAUMANNII; ACINETOBACTER CALCOACETICUS; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CONTROLLED STUDY; DENATURATION; FUSARIUM OXYSPORUM; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PEARL MILLET; PHYLOGENY; PLANT GROWTH; PLANT ROOT; POLYMERASE CHAIN REACTION; PROMOTER REGION; RHIZOSPHERE; SEEDLING; SHOOT GROWTH;

ACINETOBACTER; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; INDOLEACETIC ACIDS; MOLECULAR SEQUENCE DATA; PENNISETUM; PHYLOGENY; PLANT GROWTH REGULATORS; PLANT ROOTS; RHIZOSPHERE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SIDEROPHORES; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

ACINETOBACTER; ACINETOBACTER BAUMANNII; ACINETOBACTER CALCOACETICUS; ACINETOBACTER SP.; FUSARIUM OXYSPORUM; PENNISETUM GLAUCUM; RHIZOBIALES;

EID: 79959943679     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: 10.4014/jmb.1012.12006     Document Type: Article

References (58)

1. Alikhani, H. A., N. Saleh Rastin, and H. Antoun. 2007. Phosphate solubilization activity of rhizobia native to Iranian soils. Plant Soil 287: 35-41.
2. Arnow, L. E. 1937. Colorimetric determination of the components of 3,4-dihydroxy phenylalanine-tyrosine mixtures. J. Biol. Chem. 118: 531-537.
3. Ashrafuzzaman, M., F. Akhtar Hossen, M. Razi Ismail, Md. Anamul Hoque, M. Zahurul Islam, S. M. Shahidullah, and S. Meon. 2009. Efficiency of plant growth promoting rhizobacteria (PGPR) for the enhancement of rice growth. Afr. J. Biotechnol. 8: 1247-1252.
4. Barbe, V., D. Vallenet, N. Fonknechten, A. Kreimeyer, S. Oztas, L. Labarre, et al. 2004. Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium. Nucleic Acids Res. 32: 5766-5779.
5. Bashan, Y. and G. Holguin. 1998. Proposal for the division of plant growth-promoting rhizobacteria into two classifications: Biocontrol-PGPB (plant growth promoting bacteria) and PGPB. Soil Biol. Biochem. 30: 1225-1228.
6. Bauman, P. 1968. Isolation of Acinetobacter from soil and water. J. Bacteriol. 96: 39-42.
7. Bhavasar, B. D. and B. A. Chopade. 2003. PGPR research in India, present status and future prospectus: A review, pp. 111-113. In: Proceedings of Sixth International Workshop on Plant Growth Promoting Rhizobacteria (PGPR). Calicut, Kerala, India.
8. Chaiharn, M., S. Chunhaleuchanon, A. Kozo, and S. Lumyong. 2008. Screening of rhizobacteria for their plant growth promoting activities. KMITL Sci. Tech. J. 8: 18-23.
9. Chopade, B. A., S. B. Huddedar, A. M. Shete, J. N. Tilekar, S. D. Gore, and D. D. Dhavale. 2008. Plasmid encoding IAA and method thereof. United States Patent 7341868.
10. Chun, J., J. H. Lee, Y. Jung, M. Kim, S. Kim, B. K. Kim, and Y. W. Lim. 2007. EzTaxon: A Web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 57: 2259-2261.
11. Csaky, T. Z. 1948. On the estimation of bound hydroxylamine in biological materials. Acta Chem. Scand. 2: 450-454.
12. Egamberdiyeva, D. 2007. The effect of plant growth promoting bacteria on growth and nutrient uptake of maize in two different soils. Appl. Soil Ecol. 36: 184-189.
13. Fankem, H., D. Nwaga, A. Deube, L. Dieng, W. Merbach, and F. Xavier Etoa. 2006. Occurrence and functioning of phosphate solubilizing microorganisms from oil palm tree (Elaeis guineensis) rhizosphere in Cameroon. Afr. J. Biotechnol. 5: 2450-2460.
14. Gaspar, T., C. Kevers, C. Penel, H. Greppin, D. M. Reid, and T. A. Thorpe. 1996. Plant hormones and plant growth regulators in plant tissue culture. In Vitro Cell. Dev. Biol. Plant 32: 272-289.
15. Gadagi, R. S. and T. Sa. 2002. New isolation method for microorganisms solubilizing iron and aluminium phosphates using dyes. Soil Sci. Plant Nutr. 48: 615-618.
16. Gerhardt, P., R. G. E. Murry, A. W. Wood, and N. R. Krieg. 1994. In: Methods in General and Molecular Bacteriology. American Society for Microbiology, Washington, DC, USA.
17. Gulati, A., P. Vyas, P. Rahi, and R. C. Kasana. 2009. Plant growth-promoting and rhizosphere-competent Acinetobacter rhizosphaerae strain BIHB 723 from the cold deserts of the Himalayas. Curr. Microbiol. 58: 371-377.
18. Gholami, A., S. Shahsavani, and S. Nezarat. 2009. The effect of plant growth promoting rhizobacteria (PGPR) on germination, seedling growth and yield of maize. World Acad. Sci. Eng. Technol. 49: 19-24.
19. Hameeda, B., O. P. Rupela, G. Reddy, and K. Satyavani. 2006. Application of plant growth-promoting bacteria associated with composts and macrofauna for growth promotion of pearl millet (Pennisetum glaucum L.). Biol. Fertil. Soils 43: 221-227
20. Holton, J. 1983. A note on preparation and use of a selective differential medium for the isolation of Acinetobacter spp. from clinical sources. J. Appl. Bacteriol. 54: 141-142.
21. Huddedar, S. B., A. M. Shete, J. N. Tilekar, S. D. Gore, D. D. Dhavale, and B. A. Chopade. 2002. Isolation, characterization and plasmid pUPI126 mediated indole 3 acetic acid (IAA) production in Acinetobacter strains from rhizosphere of wheat. Appl. Biochem. Biotechnol. 102: 21-29.
22. Hwangbo, H., R. Dong Park, Y. Woong Kim, Y. Sup Rim, K. Hyung Park, T. Hwan Kim, J. Sun Suh, and K. Yong Kim. 2003. 2-Ketogluconic acid production and phosphate solubilization by Enterobacter intermedium. Curr. Microbiol. 47: 87-92.
23. Indiragandhi, P. 2008. Characterization of plant growth-promoting traits of bacteria isolated from larval guts of diamondback moth Plutella xylostella. Curr. Microbiol. 56: 327-333.
24. Jones, D. L. and P. R. Darrah. 1994. Role of root derived organic acids in the mobilization of nutrients from the rhizosphere. Plant Soil 166: 247-257.
25. Juni, E. 1972. Interspecies transformation of Acinetobacter: Genetic evidence for a ubiquitous genus. J. Bacteriol. 112: 917-936.
26. Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
27. Kumar, N. R., V. T. Arasu, and P. Gunasekaran. 2002. Genotyping of antifungal compounds producing plant growth-promoting rhizobacteria, Pseudomonas fluorescence. Curr. Sci. 82: 1463-1466.
28. Kunitsky, C., G. Osterhout, and M. Sasser. 2006. Identification of microorganisms using fatty acid methyl ester (FAME) analysis and the MIDI Sherlock Microbial Identification System, pp. 1-17. In M. J. Miller. (ed.). Encyclopedia of Rapid Microbiological Methods, Vol. 3. DHI Publishing, LLC, River Grove, IL.
29. Lacava, P. T., M. E. Stenico, and W. L. Araújo. 2008. Detection of siderophores in endophytic bacteria Methylobacterium spp. associated with Xylella fastidiosa subsp. Pauca. Pesq. Agropec. Bras. 43: 521-528.
30. Larry, B., F. Laurent, I. Verdier, J. Winoc Decousser, E. Lecaillon, H. Marchandin, et al. 2010. Accuracy of six commercial systems for identifying clinical Aeromonas isolates. Diag. Microbiol. Infect. Dis. 67: 9-14.
31. Lindow, S. E., C. Desurmont, R. Elkins, G. McGourty, E. Clark, and M. T. Brandl. 1998. Occurrence of indole-3-acetic acidproducing bacteria on pear trees and their association with fruit russet. Phytopathology 88: 1149-1157.
32. Liu, C. H., X. Chen, T. T. Liu, B. Lian, Y. Gu, V. Caer, Y. R. Xue, and B. T. Wang. 2007. Study of the antifungal activity of Acinetobacter baumannii LCH001 in vitro and identification of its antifungal components. Appl. Microbiol. Biotechnol. 76: 459-466.
33. Machuca, A. and A. M. F. Milagres. 2003. Use of agar CASagar plate modified to study the effect of different variables on the siderophore production by Aspergillus. Lett. Appl. Microbiol. 36: 177-181.
34. Neilands, J. B. 1981. Iron absorption and transport in microorganisms. Annu. Rev. Nutr. 1: 27-46.
35. Payne, S. M. 1994. Detection, isolation, and characterization of siderophores. Meth. Enzymol. 235: 329-344.
36. Peix, A., E. Lang, S. Verbarg, C. Spröer, R. Rivas, I. Santa-Regina, et al. 2009. Acinetobacter strains IH9 and OCI1, two rhizospheric phosphate solubilizing isolates able to promote plant growth, constitute a new genomovar of Acinetobacter calcoaceticus. Syst. Appl. Microbiol. 32: 334-341.
37. Pikovskaya, R. I. 1948. Mobilization of phosphorus in soil in connection with the vital activity of some microbial species. Microbiologiya 17: 362-370.
38. Raj, N. S., G. Chaluvaraju, K. N. Amruthesh, H. S. Shetty, M. S. Reddy, and J. W. Kloepper. 2003. Induction of growth promotion and resistance against downy mildew on pearl millet (Pennisetum glaucum) by rhizobacteria. Plant Dis. 87: 380-384.
39. Raj, N. S., S. A. Deepak, P. Basavaraju, H. S. Shetty, M. S. Reddy, and J. W. Kloepper. 2003. Comparative performance of formulations of plant growth promoting rhizobacteria in growth promotion and suppression of downy mildew in pearl millet. Crop Protect. 22: 579-588.
40. Rajankar, P. N., D. H. Tambekar, and R. Wate. 2007. Study of phosphate solubilization efficiencies of fungi and bacteria isolated from saline belt of Purna river basin. Res. J. Agric. Biol. Sci. 3: 701-703.
41. Rawlings, D. E. 1995. Restriction enzyme analysis of 16S rRNA genes for the rapid identification of Thiobacillus ferrooxidans, Thiobacillus thiooxidans and Leptospirillum ferrooxidans strains in leaching environments, pp. 9-17. In C. A. Jerez, T. Vargas, H. Toledo, and J. V. Wiertz (eds.). Biohydrometallurgical Processing. University of Chile Press, Santiago, Chile.
42. Rustrian, E., J. P. Delgenes, and R. Molettar. 1997. Phosphate release and uptake by pure cultures of Acinetobacter sp.: Effect of the volatile fatty acids concentration. Curr. Microbiol. 34: 43-48.
43. Sachdev, D., P. Nema, P. Dhakephalkar, S. Zinjarde, and B. Chopade. 2010. Assessment of 16S rRNA gene based phylogenetic diversity of Acinetobacter community from the rhizosphere of wheat. Microbiol. Res. 165: 627-638.
44. Sachdev, D. P. 2009. Molecular phylogenetics of Acinetobacter species from the rhizosphere of wheat varieties and plant growth promoting properties of Acinetobacter rhizobacteria. Ph.D. Thesis. University of Pune, Maharashtra, India.
45. Saha, S. C. and B. A. Chopade. 2002. Effect of food preservatives on Acinetobacter genospecies isolated from meat. J. Food Sci. Technol. 39: 26-32.
46. Sarode, P. D., M. R. Rane, B. L. Chaudhari, and S. B. Chincholkar. 2009. Siderophoregenic Acinetobacter calcoaceticus isolated from wheat rhizosphere with strong PGPR activity. Malaysian J. Microbiol. 5: 6-12.
47. Schwyn, B. and J. B. Neilands. 1987. Universal chemical assay for the detection and determination of siderophores. Anal. Biochem. 160: 47-56.
48. Suresh, A., P. Pallavi, P. Srinivas, V. Praveen Kumar, S. Jeevan Chandra, and S. Ram Reddy. 2010. Plant growth promoting activities of fluorescent Pseudomonas associated with some crop plants. Afr. J. Microbiol. Res. 4: 1491-1494.
49. Teixeira, D. A., A. C. Alfenas, R. G. Mafia, E. M. Ferreira, L. D. Siqueira, L. A. Maffia, and A. H. Mounteer. 2007. Rhizobacterial promotion of eucalypt rooting and growth. Environ. Microbiol. 38: 111-123.
50. Toro, M., R. Azcon, and J. M. Barea. 1997. Improvement of arbuscular mycorrhiza development by inoculation of soil with phosphate-solubilizing rhizobacteria to improve rock phosphate bioavailability (sup32) P and nutrient cycling. Appl. Environ. Microbiol. 63: 4408-4412.
51. Towner, K. J. and B. A. Chopade. 1987. Biotyping of Acinetobacter calcoaceticus using API 20 NE system. J. Hosp. Infect. 10: 145-151.
52. Vaneechoutte, M. and T. De Baere. 2008. Taxonomy of genus Acinetobacter based on 16S rRNA gene sequences, pp. 35-60. In U. Gerischer (ed.). Acinetobacter Molecular Microbiology. Caister Academic Press, UK.
53. Wani, P. A., M. S. Khan, and A. Zaidi. 2007. Chromium reduction, plant growth-promoting potentials, and metal solubilization by Bacillus sp. isolated from alluvial soil. Curr. Microbiol. 54: 237-243.
54. Xiao, X., X. Yin, J. Lin, L. Sun, Z. You, P. Wang, and F. Wang. 2005. Chitinase genes in lake sediments of Ardley Island, Antarctica. Appl. Environ. Microbiol. 71: 7904-7909.
55. Xu, H. X., Y. Kawamura, N. Li, L. Zhao, T. M. Li, Z. Y. Li, S. Shu, and T. Ezaki. 2000. A rapid method for determining the G+C content of bacterial chromosomes by monitoring fluorescence intensity during DNA denaturation in a capillary tube. Int. J. Syst. Evol. Microbiol. 50: 1463-1469.
56. Xue, Q. Y., Y. Chen, S. M. Li, L. Chen, G. C. Ding, D. W. Guo, and J. H. Guo. 2008. Evaluation of the strains of Acinetobacter and Enterobacter as potential biocontrol agents against Ralstonia wilt of tomato. Biocontrol 48: 252-258.
57. Yang, T., D. M. Law, and P. J. Davies. 1993. Magnitude and kinetics of stem elongation induced by exogenous indole-3-acetic acid in intact light grown pea seedling. Plant Physiol. 102: 717-724.
58. Yavankar, S. P., K. R. Pardesi, and B. A. Chopade. 2007. Species distribution and physiological characterization of Acinetobacter genospecies isolated from healthy human skin of tribal population in India. Indian J. Med. Microbiol. 25: 336-345.