메뉴 건너뛰기




Volumn 56, Issue 20, 2011, Pages 2114-2118

Application of the Mole-8.5 supercomputer: Probing the whole influenza virion at the atomic level

Author keywords

GPU; influenza virion; Mole 8.5; molecular dynamics simulation; supercomputer

Indexed keywords

INSECTIVORA;

EID: 79959808989     PISSN: 10016538     EISSN: 18619541     Source Type: Journal    
DOI: 10.1007/s11434-011-4543-7     Document Type: Article
Times cited : (18)

References (15)
  • 2
    • 70149105255 scopus 로고    scopus 로고
    • Multi-scale HPC system for multi-scale discrete simulation-Development and application of a supercomputer with 1 Petaflops peak performance in single precision
    • Chen F, Ge W, Guo L, et al. Multi-scale HPC system for multi-scale discrete simulation-Development and application of a supercomputer with 1 Petaflops peak performance in single precision. Particuology, 2009, 7: 332-335.
    • (2009) Particuology , vol.7 , pp. 332-335
    • Chen, F.1    Ge, W.2    Guo, L.3
  • 3
    • 0013097073 scopus 로고    scopus 로고
    • General approach for discrete simulation of complex systems
    • Ge W, Li J. General approach for discrete simulation of complex systems. Chinese Sci Bull, 2002, 47: 1172-1175.
    • (2002) Chinese Sci Bull , vol.47 , pp. 1172-1175
    • Ge, W.1    Li, J.2
  • 6
    • 78650521878 scopus 로고    scopus 로고
    • Perspectives of China's HPC system development: A view from the 2009 China HPC TOP100 list
    • Zhang Y, Sun J, Yuan G, et al. Perspectives of China's HPC system development: A view from the 2009 China HPC TOP100 list. Front Comput Sci China, 2010, 4: 437-444.
    • (2010) Front Comput Sci China , vol.4 , pp. 437-444
    • Zhang, Y.1    Sun, J.2    Yuan, G.3
  • 7
    • 78650193792 scopus 로고    scopus 로고
    • Molecular dynamics simulation of macromolecules using graphics processing unit
    • Xu J, Ren Y, Ge W, et al. Molecular dynamics simulation of macromolecules using graphics processing unit. Mol Simulat, 2010, 36: 1131-1140.
    • (2010) Mol Simulat , vol.36 , pp. 1131-1140
    • Xu, J.1    Ren, Y.2    Ge, W.3
  • 8
    • 0032510803 scopus 로고    scopus 로고
    • Host cell dependence of viral morphology
    • Roberts P C, Compans R W. Host cell dependence of viral morphology. Proc Natl Acad Sci USA, 1998, 95: 5746-5751.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 5746-5751
    • Roberts, P.C.1    Compans, R.W.2
  • 9
    • 0001178029 scopus 로고    scopus 로고
    • Orthomyxoviridae: The viruses and their replication
    • D. M. Knipe and P. M. Howley (Eds.), Philadelphia: Lippincott-Raven Publishers
    • Lamb R A, Krug R M. Orthomyxoviridae: The viruses and their replication. In: Knipe D M, Howley P M, eds. Field's Virology. Philadelphia: Lippincott-Raven Publishers, 2001. 1487-1531.
    • (2001) Field's Virology , pp. 1487-1531
    • Lamb, R.A.1    Krug, R.M.2
  • 10
    • 0023820458 scopus 로고
    • Influenza A virus M2 protein: Monoclonal antibody restriction of virus growth and detection of M2 in virions
    • Zebedee S L, Lamb R A. Influenza A virus M2 protein: Monoclonal antibody restriction of virus growth and detection of M2 in virions. J Virol, 1988, 62: 2762-2772.
    • (1988) J Virol , vol.62 , pp. 2762-2772
    • Zebedee, S.L.1    Lamb, R.A.2
  • 11
    • 0028051515 scopus 로고
    • Growth control of influenza A virus by M1 protein: Analysis of transfectant viruses carrying the chimeric M gene
    • Yasuda J, Bucher D J, Ishihama A. Growth control of influenza A virus by M1 protein: Analysis of transfectant viruses carrying the chimeric M gene. J Virol, 1994, 68: 8141-8146.
    • (1994) J Virol , vol.68 , pp. 8141-8146
    • Yasuda, J.1    Bucher, D.J.2    Ishihama, A.3
  • 12
    • 0002775934 scopus 로고
    • Interaction models for water in relation to protein hydration
    • Berendsen H J C, Postma J P M, van Gunsteren W F, et al. Interaction models for water in relation to protein hydration. Intermol Forces, 1981, 11(Suppl 1): 331-338.
    • (1981) Intermol Forces , vol.11 , Issue.SUPPL. 1 , pp. 331-338
    • Berendsen, H.J.C.1    Postma, J.P.M.2    van Gunsteren, W.F.3
  • 13
    • 4444282928 scopus 로고    scopus 로고
    • A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6
    • Oostenbrink C, Villa A, Mark A E, et al. A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6. J Comput Chem, 2004, 25: 1656-1676.
    • (2004) J Comput Chem , vol.25 , pp. 1656-1676
    • Oostenbrink, C.1    Villa, A.2    Mark, A.E.3
  • 15
    • 30444449842 scopus 로고    scopus 로고
    • A fast, scalable method for the parallel evaluation of distance-limited pairwise particle interactions
    • Shaw D E. A fast, scalable method for the parallel evaluation of distance-limited pairwise particle interactions. J Comput Chem, 2005, 26: 1803.
    • (2005) J Comput Chem , vol.26 , pp. 1803
    • Shaw, D.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.