A dynamic and complex network regulates the heterosis of yield-correlated traits in rapeseed (Brassica napus L.)

PLoS ONE

Volumn 6, Issue 7, 2011, Pages

  Shi, Jiaqin ^a   Li, Ruiyuan ^a   Zou, Jun ^a   Long, Yan ^a   Meng, Jinling ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; CROP PRODUCTION; DOUBLED HAPLOID LINE; GENE EXPRESSION; GENE INTERACTION; GENE LOCUS; GENETIC EPISTASIS; GENETIC REGULATION; GENETIC VARIABILITY; HETEROSIS; HETEROZYGOSITY; INHERITANCE; MOLECULAR EVOLUTION; NONHUMAN; PLANT BREEDING; PLANT GENETICS; POPULATION GENETIC STRUCTURE; QUANTITATIVE TRAIT LOCUS; QUANTITATIVE TRAIT LOCUS MAPPING; RAPESEED; ENVIRONMENT; GENETICS; GROWTH, DEVELOPMENT AND AGING; HETEROZYGOTE; HISTOLOGY; PHENOTYPE; PLANT GENOME;

BRASSICA NAPUS;

BRASSICA NAPUS; ENVIRONMENT; EPISTASIS, GENETIC; GENOME, PLANT; HETEROZYGOTE; HYBRID VIGOR; PHENOTYPE; QUANTITATIVE TRAIT LOCI;

EID: 79959803421     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0021645     Document Type: Article

References (79)

1. Shull GH, (1908) The composition of a field of maize. Ann Breed Assoc 4: 296-301.
2. Hua J, Xing Y, Wu W, Xu C, Sun X, et al. (2003) Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid. Proc Natl Acad Sci U S A 100: 2574-2579.
3. Duvick DN, (2001) Biotechnology in the 1930s: the development of hybrid maize. Nat Rev Genet 2: 69-74.
4. Birchler JA, Yao H, Chudalayandi S, (2006) Unraveling the genetic basis of hybrid vigor. Proc Natl Acad Sci U S A 103: 12957-12958.
5. Lippman ZB, Zamir D, (2007) Heterosis: revisiting the magic. Trend Genet 23: 60-66.
6. Radoev M, Becker HC, Ecke W, (2008) Genetic analysis of heterosis for yield and yield components in rapeseed (Brassica napus L.) by quantitative trait locus mapping. Genetics 179: 1547-1558.
7. Basunanda P, Radoev M, Ecke W, Friedt W, Becker HC, et al. (2010) Comparative mapping of quantitative trait loci involved in heterosis for seedling and yield traits in oilseed rape (Brassica napus L.). Theor Appl Genet 120: 271-281.
8. You A, Lu X, Jin H, Ren X, Liu K, et al. (2006) Identification of quantitative trait loci across recombinant inbred lines and testcross populations for traits of agronomic importance in rice. Genetics 172: 1287-1300.
9. Frascaroli E, Cane MA, Landi P, Pea G, Gianfranceschi L, et al. (2007) Classical genetic and quantitative trait loci analyses of heterosis in a maize hybrid between two elite inbred lines. Genetics 176: 625-644.
10. Peng J, Ronin Y, Fahima T, Roder MS, Li Y, et al. (2003) Domestication quantitative trait loci in Triticum dicoccoides, the progenitor of wheat. Proc Natl Acad Sci U S A 100: 2489-2494.
11. Fu J, Keurentjes JJ, Bouwmeester H, America T, Verstappen FW, et al. (2009) System-wide molecular evidence for phenotypic buffering in Arabidopsis. Nat Genet 41: 166-167.
12. Allard RW, (1956) Formulas and tables to facilitate the calculation of recombination values in heredity. Hilgardia 24: 235-278.
13. Hua J, Xing Y, Xu C, Sun X, Yu S, et al. (2002) Genetic dissection of an elite rice hybrid revealed that heterozygotes are not always advantageous for performance. Genetics 162: 1885-1895.
14. Melchinger AE, Utz HF, Piepho HP, Zeng Z, Schon CC, (2007) The role of epistasis in the manifestation of heterosis: a systems-oriented approach. Genetics 177: 1815-1825.
15. Li L, Lu K, Chen Z, Mu T, Hu Z, et al. (2008) Dominance, overdominance and epistasis condition the heterosis in two heterotic rice hybrids. Genetics 180: 1725-1742.
16. Yan J, Tang H, Huang Y, Zheng Y, Li J, (2006) Quantitative trait loci mapping and epistatic analysis for grain yield and yield components using molecular markers with an elite maize hybrid. Euphytica 149: 121-131.
17. Tang J, Yan J, Ma X, Teng W, Wu W, et al. (2010) Dissection of the genetic basis of heterosis in an elite maize hybrid by QTL mapping in an immortalized F2 population. Theor Appl Genet 120: 333-340.
18. Flint-Garcia SA, Buckler ES, Tiffin P, Ersoz E, Springer NM, (2009) Heterosis is prevalent for multiple traits in diverse maize germplasm. Plos One 4: e7433.
19. Meyer RC, Kusterer B, Lisec J, Steinfath M, Becher M, et al. (2010) QTL analysis of early stage heterosis for biomass in Arabidopsis. Theor Appl Genet 120: 227-237.
20. Kusterer B, Muminovic J, Utz HF, Piepho HP, Barth S, et al. (2007) Analysis of a triple testcross design with recombinant inbred lines reveals a significant role of epistasis in heterosis for biomass-related traits in Arabidopsis. Genetics 175: 2009-2017.
21. Semel Y, Nissenbaum J, Menda N, Zinder M, Krieger U, et al. (2006) Overdominant quantitative trait loci for yield and fitness in tomato. Proc Natl Acad Sci U S A 103: 12981-12986.
22. Williams W, (1959) Heterosis and the genetics of complex characters. Nature 184: 527-530.
23. Zhang Q, Gao Y, Yang S, Ragab RA, Saghai Maroof MA, et al. (1994) A diallel analysis of heterosis in elite hybrid rice based on RFLPs and microsatellites. Theor Appl Genet 89: 185-192.
24. Krieger U, Lippman ZB, Zamir D, (2010) The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato. Nat Genet 42: 459-463.
25. Schnell FW, Cockerham CC, (1992) Multiplicative vs arbitrary gene-action in heterosis. Genetics 131: 461-469.
26. Singh H, Sharma SN, Sain RS, (2004) Heterosis studies for yield and its components in bread wheat over environments. Hereditas 141: 106-114.
27. Garcia AA, Wang S, Melchinger AE, Zeng Z, (2008) Quantitative trait loci mapping and the genetic basis of heterosis in maize and rice. Genetics 180: 1707-1724.
28. Springer NM, Stupar RM, (2007) Allelic variation and heterosis in maize: how do two halves make more than a whole? Genome Res 17: 264-275.
29. Roff DA, Emerson K, (2006) Epistasis and dominance: evidence for differential effects in life-history versus morphological traits. Evolution 60: 1981-1990.
30. Schauer N, Semel Y, Balbo I, Steinfath M, Repsilber D, et al. (2008) Mode of inheritance of primary metabolic traits in tomato. Plant Cell 20: 509-523.
31. Lisec J, Steinfath M, Meyer RC, Selbig J, Melchinger AE, et al. (2009) Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations. Plant J 59: 777-788.
32. Chan EK, Rowe HC, Kliebenstein DJ, (2009) Understanding the evolution of defense metabolites in Arabidopsis thaliana using genome-wide association mapping. Genetics 185: 991-1007.
33. Schauer N, Semel Y, Roessner U, Gur A, Balbo I, et al. (2006) Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat Biotechnol 24: 447-454.
34. Hua J, (2003) Genetic dissection on the basis of heterosis using an "immortalized F2" population. Wuhan, China Huazhong Agricultural University.
35. Yan J, (2003) Study on the genetic basis of heterosis in maize and comparative genomics between rice and maize. Wuhan, China Huazhong Agricultural University.
36. Liao C, Wu P, Hu B, Yi K, (2001) Effects of genetic background and environment on QTLs and epistasis for rice (Oryza sativa L.) panicle number. Theor Appl Genet 103: 104-111.
37. Chen W, (2008) Molecular dissection of genetic bases of important agronomic traits in oilseed rape Wuhan, China: Huazhong Agricultural University.
38. Yu S, Li J, Xu C, Tan Y, Gao Y, et al. (1997) Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid. Proc Natl Acad Sci U S A 94: 9226-9231.
39. Shi J, Li R, Qiu D, Jiang C, Long Y, et al. (2009) Unraveling the complex tait of crop yield with quantitative trait loci mapping in Brassica napus. Genetics 182: 851-861.
40. Dubcovsky J, Dvorak J, (2007) Genome plasticity a key factor in the success of polyploid wheat under domestication. Science 316: 1862-1866.
41. Sanjuan R, Elena SF, (2006) Epistasis correlates to genomic complexity. Proc Natl Acad Sci U S A 103: 14402-14405.
42. Maccaferri M, Sanguineti MC, Corneti S, Ortega JL, Salem MB, et al. (2008) Quantitative trait loci for grain yield and adaptation of durum wheat (Triticum durum Desf.) across a wide range of water availability. Genetics 178: 489-511.
43. Li Z, Yu S, Lafitte H, Huang N, Courtois B, et al. (2003) QTL × environment interactions in rice. I. heading date and plant height. Theor Appl Genet 108: 141-153.
44. Reif JC, Kusterer B, Piepho HP, Meyer RC, Altmann T, et al. (2009) Unraveling epistasis with triple testcross progenies of near-isogenic lines. Genetics 181: 247-257.
45. Salvi S, Tuberosa R, (2005) To clone or not to clone plant QTLs: present and future challenges. Trend Plant Sci 10: 297-304.
46. Zhang Y, Luo L, Liu T, Xu C, Xing Y, (2009) Four rice QTL controlling number of spikelets per panicle expressed the characteristics of single Mendelian gene in near isogenic backgrounds. Theor Appl Genet 118: 1035-1044.
47. Xue W, Xing Y, Weng X, Zhao Y, Tang W, et al. (2008) Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat Genet 40: 761-767.
48. Xing Y, Tang W, Xue W, Xu C, Zhang Q, (2008) Fine mapping of a major quantitative trait loci, qSSP7, controlling the number of spikelets per panicle as a single Mendelian factor in rice. Theor Appl Genet 116: 789-796.
49. Ni Z, Kim ED, Ha M, Lackey E, Liu J, et al. (2009) Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature 457: 327-331.
50. Terao T, Nagata K, Morino K, Hirose T, (2010) A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice. Theor Appl Genet 120: 875-893.
51. Guo M, Rupe M, Dieter J, Zou J, Spielbauer D, et al. (2010) Cell Number Regulator1 affects plant and organ size in maize: implications for crop yield enhancement and heterosis. Plant Cell 22: 1057-1073.
52. Melchinger AE, Piepho HP, Utz HF, Muminovic J, Wegenast T, et al. (2007) Genetic basis of heterosis for growth-related traits in Arabidopsis investigated by testcross progenies of near-isogenic lines reveals a significant role of epistasis. Genetics 177: 1827-1837.
53. Mei H, Li Z, Shu Q, Guo L, Wang Y, et al. (2005) Gene actions of QTLs affecting several agronomic traits resolved in a recombinant inbred rice population and two backcross populations. Theor Appl Genet 110: 649-659.
54. Luo L, Li Z, Mei H, Shu Q, Tabien R, et al. (2001) Overdominant epistatic loci are the primary genetic basis of inbreeding depression and heterosis in rice. II. Grain yield components. Genetics 158: 1755-1771.
55. Li Z, Luo L, Mei H, Wang D, Shu Q, et al. (2001) Overdominant epistatic loci are the primary genetic basis of inbreeding depression and heterosis in rice. I. Biomass and grain yield. Genetics 158: 1737-1753.
56. Xu S, Jia Z, (2007) Genomewide analysis of epistatic effects for quantitative traits in barley. Genetics 175: 1955-1963.
57. Lu H, Romero-Severson J, Bernardo R, (2003) Genetic basis of heterosis explored by simple sequence repeat markers in a random-mated maize population. Theor Appl Genet 107: 494-502.
58. Stuber CW, Lincoln SE, Wolff DW, Helentjaris T, Lander ES, (1992) Identification of genetic factors contributing to heterosis in a hybrid from two elite maize inbred lines using molecular markers. Genetics 132: 823-839.
59. Allard RW, (1988) Genetic changes associated with the evolution of adaptedness in cultivated plants and their wild progenitors. Heredity 79: 225-238.
60. Zeng Z, Wang T, Zou W, (2005) Modeling quantitative trait loci and interpretation of models. Genetics 169: 1711-1725.
61. Qiu D, Morgan C, Shi J, Long Y, Liu J, et al. (2006) A comparative linkage map of oilseed rape and its use for QTL analysis of seed oil and erucic acid content. Theor Appl Genet 114: 67-80.
62. Ford-Lloyd BV, Newbury HJ, Jackson MT, Virk PS, (2001) Genetic basis for co-adaptive gene complexes in rice (Oryza sativa L.) landraces. Heredity 87: 530-536.
63. Li Z, Pinson SRM, Park WD, Paterson AH, Stansel JW, (1997) Epistasis for three grain yield components in rice (Oryza sativa L). Genetics 145: 453-465.
64. Matioli SR, Templeton AR, (1999) Coadapted gene complexes for morphological traits in Drosophila mercatorum. two-loci interactions. Heredity 83: 54-61.
65. U N, (1935) Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization. Japan J Bot 7: 389-452.
66. Lysak MA, Cheung K, Kitschke M, Bures P, (2007) Ancestral chromosomal blocks are triplicated in Brassiceae species with varying chromosome number and genome size. Plant Physiol 145: 402-410.
67. Abel S, Möllers C, Becker HC, (2005) Development of synthetic Brassica napus lines for the analysis of "fixed heterosis" in allopolyploid plants. Euphytica 146: 157-163.
68. Rhode JM, Cruzan MB, (2005) Contributions of heterosis and epistasis to hybrid fitness. The American Naturalist 166: E124-139.
69. Jiang W, Chu S, Piao R, Chin J, Jin Y, et al. (2008) Fine mapping and candidate gene analysis of hwh1 and hwh2, a set of complementary genes controlling hybrid breakdown in rice. Theor Appl Genet 116: 1117-1127.
70. East EM, (1936) Heterosis. Genetics 21: 375-397.
71. Mika V, Tillmann P, Koprna R, Nerusil P, Kucera V, (2003) Fast prediction of quality parameters in whole seeds of oilseed rape (Brassica napus L.). Plant Soil Environ 49: 141-145.
72. Kong F, (2005) Quantitaive genetics in plants. Beijing China Agricultural University Press pp. 224-237.
73. Long Y, Shi J, Qiu D, Li R, Zhang C, et al. (2007) Flowering time quantitative trait Loci analysis of oilseed brassica in multiple environments and genomewide alignment with Arabidopsis. Genetics 177: 2433-2444.
74. Zeng Z, (1994) Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
75. Churchill GA, Doerge RW, (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
76. Stuber CW, Edwards MD, Wendel JF, (1987) Molecular marker-facilitated investigations of quantitative trait loci in maize. II. factors influencing yield and its component traits. Crop Sci 27: 639-648.
77. Goffinet B, Gerber S, (2000) Quantitative trait loci: a meta-analysis. Genetics 155: 463-473.
78. Arcade A, Labourdette A, Falque M, Mangin B, Chardon F, et al. (2004) BioMercator: integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics 20: 2324-2326.
79. Wang D, Zhu J, Li Z, Paterson AH, (1999) Mapping QTLs with epistatic effects and QTL × environment interactions by mixed linear model approaches. Theor Appl Genet 99: 1255-1264.