Proteomics analysis of Bifidobacterium longum NCC2705 growing on glucose, fructose, mannose, xylose, ribose, and galactose

Proteomics

Volumn 11, Issue 13, 2011, Pages 2628-2638

  Liu, Dawei ^a   Wang, Shuai ^b   Xu, Bin ^c   Guo, Yanghong ^a   Zhao, Jiangli ^a   Liu, Wei ^a   Sun, Zhongke ^a   Shao, Changlin ^a   Wei, Xiao ^a   Jiang, Zheng ^a   Wang, Xuesong ^a   Liu, Feng ^c   Wang, Jie ^c   Huang, Liuyu ^a   Hu, Darong ^b   He, Xiang ^a   Riedel, Christian U ^d   Yuan, Jing ^a  

^a BEIJING INSTITUTE OF MICROBIOLOGY AND EPIDEMIOLOGY   (China)

^b CHINESE PLA GENERAL HOSPITAL   (China)

^c NATIONAL CENTER OF BIOMEDICAL ANALYSIS   (China)

^d UNIVERSITY OF ULM   (Germany)

Author keywords

Microbiology; Monosaccharide; Phosphorylation modification; Uptake and metabolism

Indexed keywords

ABC TRANSPORTER; ACETIC ACID; BACTERIAL PROTEIN; BL0033 PROTEIN; CARBON; CHAPERONIN; ENO PROTEIN; FRUCTOSE; GALACTOSE; GLUCOSE; LACTIC ACID; MANNOSE; PGM PROTEIN; PYRUVIC ACID; RIBOSE; SERINE; TAL PROTEIN; TYROSINE; UNCLASSIFIED DRUG; XYLOSE;

ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BIFIDOBACTERIUM LONGUM; CARBOHYDRATE TRANSPORT; CATABOLISM; GENE INDUCTION; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN MODIFICATION; PROTEIN PHOSPHORYLATION; PROTEOMICS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

BACTERIAL PROTEINS; BIFIDOBACTERIUM; CARBON; CULTURE MEDIA; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FRUCTOSE; GALACTOSE; GLUCOSE; HUMANS; MANNOSE; PROTEOMICS; PYRUVATES; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; XYLOSE;

BIFIDOBACTERIUM LONGUM;

EID: 79959739610     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201100035     Document Type: Article

References (41)

1. Leahy, S. C., Higgins, D. G., Fitzgerald, G. F., van Sinderen, D., Getting better with bifidobacteria. J. Appl. Microbiol. 2005, 98, 1303-1315.
2. Schell, M. A., Karmirantzou, M., Snel, B., Vilanova, D. et al., The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc. Natl. Acad. Sci. USA 2002, 99, 14422-14427.
3. Barrangou, R., Azcarate-Peril, M. A., Duong, T., Global analysis of carbohydrate utilization by Lactobacillus acidophilus using cDNA microarrays. Proc. Natl. Acad. Sci. USA 2006, 103, 3816-3821.
4. He, T., Roelofsen, H., Alvarez-Llamas, G., de Vries, M. et al., Differential analysis of protein expression of Bifidobacterium grown on different carbohydrates. J. Microbiol. Methods 2007, 69, 364-370.
5. Briczinski, E. P., Phillips, A. T., Roberts, R. F., Transport of glucose by Bifidobacterium animalis subsp. lactis occurs via facilitated diffusion. Appl. Environ. Microbiol. 2008, 74, 6941-6948.
6. Lambert, A., Østerås, M., Mandon, K., Poggi, M. C., Fructose uptake in Sinorhizobium meliloti is mediated by a high-affinity ATP-binding cassette transport system. J. Bacteriol. 2001, 183, 4709-4717.
7. Henderson, P. J., Baldwin, S. A., Cairns, M. T., Charalambous, B. M. et al., Sugar-cation symport systems in bacteria. Int. Rev. Cytol. 1992, 137, 149-208.
8. Saier, M. H., Families of transmembrane sugar transport proteins. Mol. Microbiol. 2000, 35, 699-710.
9. Kaplan, H., Hutkins, R. W., Fermentation of fructooligosaccharides by lactic acid bacteria and bifidobacteria. Appl. Environ. Microbiol. 2000, 66, 2682-2684.
10. Higgins, C. F., ABC transporters: from microorganisms to man. Annu. Rev. Cell Biol. 1992, 8, 67-113.
11. Caescu, C. I., Vidal, O., Krzewinski, F., Artenie, V., Bouquelet, S., Bifidobacterium longum requires a fructokinase (Frk; ATP:D-fructose 6-phosphotransferase, EC 2.7.1.4) for fructose catabolism. J. Bacteriol. 2004, 186, 6515-6525.
12. Mazé, A., O'Connell-Motherway, M., Fitzgerald, G. F., Deutscher, J., van Sinderen, D., Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003. Appl. Environ. Microbiol. 2007, 73, 545-553.
13. Yuan, J., Zhu, L., Liu, X., Li, T. et al., A proteome reference map and proteomics analysis of Bifidobacterium longum NCC2705. Mol. Cell. Proteomics 2006, 5, 1105-1118.
14. De Man, J. C., Rogosa, M., Sharpe, M. E., A medium for the cultivation of lactobacilli. J. Appl. Bacteriol. 1960, 23, 130-135.
15. Krzewinski, F., Brassart, C., Gavini, F., Bouquelet, S., Glucose and galactose transport in Bifidobacterium bifidum DSM 20082. Curr. Microbiol. 1997, 35, 175-179.
16. + through its growth-associated production. Appl. Environ. Microbiol. 2006, 72, 5204-5210.
17. Gorg, A., Weiss, W., Dunn, M. J., Current two-dimensional electrophoresis technology for proteomics. Proteomics 2004, 4, 3665-3685.
18. Yuan, J., Wang, B., Sun, Z., Bo, X. et al., Analysis of host-inducing proteome changes in Bifidobacterium longum NCC2705 grown in vivo. J. Proteome Res. 2008, 7, 375-385.
19. Matsuki, T., Watanabe, K., Tanaka, R., Fukuda, M., Oyaizu, H., Distribution of bifidobacterial species in human intestinal microflora examined with 16S rRNA-gene-targeted species-specific primers. Appl. Environ. Microbiol. 1999, 65, 4506-4512.
20. Desjardin, L. E., Hayes, L. G., Sohaskey, C. D., Wayne, L. G., Eisenach, K. D., Microaerophilic induction of the Crystallin chaperone protein homologue (hspX) mRNA of Mycobacterium tuberculosis. J. Bacteriol. 2001, 183, 5311-5316.
21. Olsen, J. V., Blagoev, B., Gnad, F., Macek, B. et al., Global, in-vivo and site-specific phosphorylation dynamics of signaling networks. Cell 2006, 127, 635-648.
22. Macek, B., Mijakovic, I., Olsen, J. V., Gnad, F. et al., The Serine/Threonine/Tyrosine phosphoproteome of the model bacterium Bacillus subtilis. Mol. Cell. Proteomics 2007, 6, 697-707.
23. Bornet, F. R., Brouns, F., Tashiro, Y., Duvillier, V., Nutritional aspects of short-chain fructooligosaccharides: natural occurrence, chemistry, physiology and health implications. Dig. Liver Dis. 2002, 34, S111-S120.
24. Marx, S. P., Winkler, S., Hartmeier, W., Metabolization of beta-(2, 6)-linked fructose-oligosaccharides by different bifidobacteria. FEMS Microbiol. Lett. 2000, 182, 163-169.
25. Parche, S., Amon, J., Jankovic, I., Rezzonico, E. et al., Sugar transport systems of Bifidobacterium longum NCC2705. J. Mol. Microbiol. Biotechnol. 2007, 12, 9-19.
26. Antelmann, H., Yamamoto, H., Sekiguchi, J., Hecker, M., Stabilization of cell wall proteins in Bacillus subtilis: a proteomic approach. Proteomics 2002, 2, 591-602.
27. Veiga, P., Gallini, C. A., Beal, C., Michaud, M. et al., Bifidobacterium animalis subsp. lactis fermented milk product reduces inflammation by altering a niche for colitogenic microbes. Proc. Natl. Acad. Sci. USA 2010, 107, 18132-18137.
28. Palframan, R. J., Gibson, G. R., Rastall, R. A., Carbohydrate preferences of Bifidobacterium species isolated from the human gut. Curr. Issues Intest. Microbiol. 2003, 4, 71-75.
29. Perrin, S., Warchol, M., Grill, J. P., Schneider, F., Fermentations of fructo-oligosaccharides and their components by Bifidobacterium infantis ATCC 15697 on batch culture in semi-synthetic medium. J. Appl. Microbiol. 2001, 90, 859-865.
30. Ruas-Madiedo, P., Hernández-Barranco, A., Margolles, A., de los Reyes-Gavilán, C. G., A bile salt-resistant derivative of Bifidobacterium animalis has an altered fermentation pattern when grown on glucose and maltose. Appl. Environ. Microbiol. 2005, 71, 6564-6570.
31. Van der Meulen, R., Avonts, L., De Vuyst, L., Short fractions of oligofructose are preferentially metabolized by Bifidobacterium animalis DN-173 010. Appl. Environ. Microbiol. 2004, 70, 1923-1930.
32. Kim, T. B., Song, S. H., Kang, S. C., Oh, D. K., Quantitative comparison of lactose and glucose utilization in Bifidobacterium longum cultures. Biotechnol. Prog. 2003, 19, 672-675.
33. Garrigues, C., Loubiere, P., Lindley, N. D., Cocaign-Bousquet, M., Control of the shift from homolactic acid to mixed-acid fermentation in Lactococcus lactis: predominant role of the NADH/NAD+ratio. J. Bacteriol. 1997, 179, 5282-5287.
34. Krzewinski, F., Brassart, C., Gavini, F., Bouquelet, S., Characterization of the lactose transport system in the strain Bifidobacterium bifidum DSM 20082. Curr. Microbiol. 1996, 32, 301-307.
35. Ajdić, D., Pham, V. T., Global transcriptional analysis of Streptococcus mutans sugar transporters using microarrays. J. Bacteriol. 2007, 189, 5049-5059.
36. Horler, R. S., Müller, A., Williamson, D. C., Potts, J. R., Furanose-specific sugar transport: characterization of a bacterial galactofuranose-binding protein. J. Biol. Chem. 2009, 6, 31156-31163.
37. Ungerer, J. L., Pratte, B. S., Thiel, T., Regulation of fructose transport and its effect on fructose toxicity in Anabaena spp. J. Bacteriol. 2008, 190, 8115-8125.
38. Schneider, E., Import of solutes by ABC transporters - the maltose and other system, in: E. B. Holland, S. Core, K. Kuchlen, C. Higgins, eds. ABC Proteins: from Bacteria to Man, Academic Press, New York 2003, pp. 157-185.
39. Pawson, T., Scott, J. D., Protein phosphorylation in signaling - 50 years and counting. Trends Biochem. Sci. 2005, 30, 286-290.
40. Cozzone, A. J., Role of protein phosphorylation on serine/threonine and tyrosine in the virulence of bacterial pathogens. J. Mol. Microbiol. Biotechnol. 2005, 9, 198-213.
41. Rosen, R., Becher, D., Büttner, K., Biran, D. et al., Highly phosphorylated bacterial proteins. Proteomics 2004, 4, 3068-3077.