메뉴 건너뛰기




Volumn 4, Issue 4, 2010, Pages 329-335

Array2GO: A simple web-based tool to search gene ontology for analysis of multi genes expression

Author keywords

Database; Gene Ontology; Microarray; Omics; Visualization

Indexed keywords

DATABASE SYSTEMS; EXPERIMENTS; INTERNET PROTOCOLS; NETWORK PROTOCOLS; ONTOLOGY; PLANT EXTRACTS; TREES (MATHEMATICS); USER INTERFACES; VISUALIZATION; WORLD WIDE WEB;

EID: 79959717460     PISSN: 19760280     EISSN: 20927843     Source Type: Journal    
DOI: 10.1007/s13206-010-4410-7     Document Type: Article
Times cited : (5)

References (32)
  • 1
    • 34248138823 scopus 로고    scopus 로고
    • The Bio-Prompt-box: An ontology-based clustering tool for searching in biological databases
    • Corsi, C., Ferragina, P. & Marangoni, R. The Bio-Prompt-box: an ontology-based clustering tool for searching in biological databases. BMC Bioinformatics 8 (Suppl 1), S8 (2007).
    • (2007) BMC Bioinformatics. , vol.8 , Issue.SUPPL 1
    • Corsi, C.1    Ferragina, P.2    Marangoni, R.3
  • 2
    • 13444293344 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • (Database issue)
    • Wheeler, D.L. et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 33 (Database issue), D39-D45 (2005).
    • (2005) Nucleic Acids Res. , vol.33 , pp. 39-45
    • Wheeler, D.L.1
  • 3
    • 13444273448 scopus 로고    scopus 로고
    • The universal protein resource (Uni-Prot)
    • Bairoch, A. et al. The universal protein resource (Uni-Prot). Nucl. Acids Res. 33, D154-D159 (2005).
    • (2005) Nucl. Acids Res. , vol.33 , pp. 154-159
    • Bairoch, A.1
  • 4
    • 0011542799 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Bateman, A. et al. The Pfam protein families database. Nucleic Acids Res. 30, 276-280 (2002).
    • (2002) Nucleic Acids Res. , vol.30 , pp. 276-280
    • Bateman, A.1
  • 5
    • 0033954256 scopus 로고    scopus 로고
    • The protein data bank
    • Berman, H.M. et al. The protein data bank. Nucleic Acids Res. 28, 235-242 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 235-242
    • Berman, H.M.1
  • 6
    • 33644874819 scopus 로고    scopus 로고
    • From genomics to chemical genomics: New developments in KEGG
    • Kanehisa, M. et al. From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res. 34, D354-D357 (2006)
    • (2006) Nucleic Acids Res. , vol.34 , pp. 354-357
    • Kanehisa, M.1
  • 7
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner, M. et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium, Nat. Genet. 25, 25-29 (2000).
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 8
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure, J. & Ji, H. Next-generation DNA sequencing. Nat. Biotechnol. 26, 1135-1145 (2008).
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 9
    • 75949113358 scopus 로고    scopus 로고
    • A rich internet application to take a step forward in the analysis of mass spectrometrybased quantitative proteomics experiments
    • Albaum, S.P. et al. A rich internet application to take a step forward in the analysis of mass spectrometrybased quantitative proteomics experiments. Bioinformatics 25, 3128-3134 (2009).
    • (2009) Bioinformatics. , vol.25 , pp. 3128-3134
    • Albaum, S.P.1
  • 10
    • 77649252269 scopus 로고    scopus 로고
    • Visualization of omics data for systems biology
    • Gehlenborg, N. et al. Visualization of omics data for systems biology. Nat. Methods 7, S56-S68 (2010).
    • (2010) Nat. Methods. , vol.7 , pp. 56-68
    • Gehlenborg, N.1
  • 12
    • 75849158230 scopus 로고    scopus 로고
    • Gene Ontology Consortium, The Gene Ontology in 2010: Extensions and refinements
    • Database issue
    • Gene Ontology Consortium, The Gene Ontology in 2010: extensions and refinements, Nucleic Acids Res. 38(Database issue), D331-D335 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. 331-335
  • 13
    • 24644470505 scopus 로고    scopus 로고
    • Ontological analysis of gene expression data: Current tools, limitations, and open problems
    • Khatri, P. & Drǎghici, S. Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics 21, 3587-3595 (2005).
    • (2005) Bioinformatics. , vol.21 , pp. 3587-3595
    • Khatri, P.1    Drǎghici, S.2
  • 14
    • 34250790725 scopus 로고    scopus 로고
    • Estimating the annotation error rate of curated GO database sequence annotations
    • Jones, C.E., Brown, A.L. & Baumann, U. Estimating the annotation error rate of curated GO database sequence annotations. BMC Bioinformatics 8, 170 (2007).
    • (2007) BMC Bioinformatics. , vol.8 , pp. 170
    • Jones, C.E.1    Brown, A.L.2    Baumann, U.3
  • 15
    • 65449147869 scopus 로고    scopus 로고
    • The use of gene ontology evidence codes in preventing classifier assessment bias
    • Rogers, M.F. & Ben-Hur, A. The use of gene ontology evidence codes in preventing classifier assessment bias. Bioinformatics 25, 1173-1177 (2009).
    • (2009) Bioinformatics. , vol.25 , pp. 1173-1177
    • Rogers, M.F.1    Ben-Hur, A.2
  • 16
    • 36448946146 scopus 로고    scopus 로고
    • Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis
    • Grossmann, S., Bauer, S., Robinson, P.N. & Vingron, M. Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis. Bioinformatics 23, 3024-3031 (2007).
    • (2007) Bioinformatics. , vol.23 , pp. 3024-3031
    • Grossmann, S.1    Bauer, S.2    Robinson, P.N.3    Vingron, M.4
  • 17
    • 58349111875 scopus 로고    scopus 로고
    • AmiGO: Online access to ontology and annotation data
    • Carbon, S. et al. AmiGO: online access to ontology and annotation data. Bioinformatics 25, 288-289 (2008).
    • (2008) Bioinformatics. , vol.25 , pp. 288-289
    • Carbon, S.1
  • 18
    • 47049099111 scopus 로고    scopus 로고
    • Ontologizer 2.0-a multifunctional tool for GO term enrichment analysis and data exploration
    • Bauer, S., Grossmann, S., Vingron, M. & Robinson, P.N. Ontologizer 2.0-a multifunctional tool for GO term enrichment analysis and data exploration. Bioinformatics 24, 1650-1651 (2008).
    • (2008) Bioinformatics. , vol.24 , pp. 1650-1651
    • Bauer, S.1    Grossmann, S.2    Vingron, M.3    Robinson, P.N.4
  • 20
    • 79959688563 scopus 로고    scopus 로고
    • QuickGO: A user tutorial for the web-based Gene Ontology browser
    • Huntley, R.P. et al. QuickGO: a user tutorial for the web-based Gene Ontology browser. Database (Oxford), bap010 (2009).
    • (2009) Database (Oxford). , vol.bap010
    • Huntley, R.P.1
  • 21
    • 3042855210 scopus 로고    scopus 로고
    • UniGene: A unified view of the transcriptome
    • In, National Center for Biotechnology Information
    • Pontius, J.U., Wagner, L. & Schuler, G.D. UniGene: a unified view of the transcriptome. In: The NCBI Handbook, National Center for Biotechnology Information (2003).
    • (2003) The NCBI Handbook.
    • Pontius, J.U.1    Wagner, L.2    Schuler, G.D.3
  • 23
    • 49649116149 scopus 로고    scopus 로고
    • FlyBase Consortium. FlyBase: A database for the Drosophila research community
    • Drysdale, R. & FlyBase Consortium. FlyBase: a database for the Drosophila research community. Methods Mol. Biol. 420, 45-59 (2008).
    • (2008) Methods Mol. Biol. , vol.420 , pp. 45-59
    • Drysdale, R.1
  • 25
    • 33846057724 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • (Database issue)
    • Pruitt, K.D., Tatusova, T. & Maglott, D.R. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 35 (Database issue), D61-D65 (2007).
    • (2007) Nucleic Acids Res. , vol.35 , pp. 61-65
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 26
    • 43949138227 scopus 로고    scopus 로고
    • Blast2GO: A comprehensive suite for functional analysis in plant genomics
    • Conesa, A. & Götz, S. Blast2GO: A comprehensive suite for functional analysis in plant genomics. Int. J. Plant Genomics 619832 (2008).
    • (2008) Int. J. Plant Genomics. , pp. 619832
    • Conesa, A.1    Götz, S.2
  • 27
    • 54949132966 scopus 로고    scopus 로고
    • GOfetcher: A database with complex searching facility for gene ontology
    • Pirooznia, M., Habib, T., Perkins, E.J. & Deng, Y. GOfetcher: a database with complex searching facility for gene ontology. Bioinformatics 24, 2561-2563 (2008).
    • (2008) Bioinformatics. , vol.24 , pp. 2561-2563
    • Pirooznia, M.1    Habib, T.2    Perkins, E.J.3    Deng, Y.4
  • 30
    • 84899772276 scopus 로고    scopus 로고
    • Fedora [http://fedoraproject.org/].
    • Fedora.
  • 31
    • 84899779666 scopus 로고    scopus 로고
    • MySQL [http://www.mysql.com].
    • MySQL.
  • 32
    • 84899780362 scopus 로고    scopus 로고
    • Apache [http://www.apache.org].
    • Apache.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.