SunTILL: A TILLING resource for gene function analysis in sunflower

Plant Methods

Volumn 7, Issue 1, 2011, Pages

  Sabetta, Wilma ^a   Alba, Vittorio ^a   Blanco, Antonio ^a   Montemurro, Cinzia ^a  

^a UNIVERSITY OF BARI   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

HELIANTHUS; HELIANTHUS ANNUUS; PERONOSPORACEAE;

EID: 79959644583     PISSN: None     EISSN: 17464811     Source Type: Journal    
DOI: 10.1186/1746-4811-7-20     Document Type: Article

References (59)

1. Jan CC, Seiler GJ. Oilseed Crops. Genetic resources, chromosome engineering and crop improvement 2007, 4:103-168. New York: Taylor & Francis Group, Singh RJ, Chapter 5.
2. Harter AV, Gardner KA, Falush D, Lentz DL, Bye RA, Rieseberg1 LH. Origin of extant domesticated sunflowers in eastern North America. Nature 2004, 430:201-205. 10.1038/nature02710, 15241413.
3. Seiler GJ. Utilization of wild sunflower species for the improvement of cultivated sunflower. Field Crops Research 1992, 30(Suppl 3-4):195-230.
4. U.S. Department of Agriculture. , http://www/fas.usda.gov/oilseeds/circular/2005
5. Kleingartner LW. World outlook and future development of sunflower markets around the world. Proceedings of the 16th International Sunflower Conference, Paris 2004, 69-77. International Sunflower Association, Seiler GJ.
6. Micic Z, Hahn V, Bauer E, Schon C, Melchinger A. QTL mapping of resistance to Sclerotinia midstalk rot in RIL of sunflower population NDBLOSsel × CM625. Theor Appl Genet 2005, 110(Suppl 8):1490-1498.
7. Lucas O, Kallerhoff J, Alibert G. Production of stable transgenic sunflowers (Helianthus annuus L.) from wounded immature embryos by particle bombardment and co-cultivation with Agrobacterium tumefaciens. Mol Breeding 2000, 6:479-487.
8. Encheva J, Shindrova P, Penchev E. Developing mutant sunflower lines (Helianthus annuus L.) through induced mutagenesis. HELIA 2008, 31(Suppl 48):61-72.
9. McCallum CM, Comai L, Greene EA, Henikoff S. Targeting Induced Local Lesions IN Genomes (TILLING) for plant functional genomics. Plant Physiol 2000, 123:439-442. 10.1104/pp.123.2.439, 1539256, 10859174.
10. Greene EA, Codomo CA, Taylor NE, Henikoff JG, Till BJ, Reynolds SH, Enns LC, Burtner C, Johnson JE, Odden AR, Comai L, Henikoff S. Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics 2003, 164:731-740. 1462604, 12807792.
11. Till BJ, Comai L, Henikoff S. TILLING and EcoTILLING for Crop Improvement. Genomics-Assisted Crop Improvement. Volume: Genomics Approaches and Platforms, Chapter 17 2007, 333-349. Springer, Netherlands, Varshney RK, Tuberosa R.
12. Wu JL, Wu C, Lei C, Baraoidan M, Bordeos A, Madama MRS, Ramos-Pamplona M, Mauleon R, Portugal A, Ulat VJ, Bruskiewich R, Wang G, Leach J, Khush G, Leung H. Chemical- and irradiation-induced mutants of indica rice IR64 for forward and reverse genetics. Plant Mol Biol 2005, 59:85-97. 10.1007/s11103-004-5112-0, 16217604.
13. International Board for Plant Genetic Resources (IBPGR) Descriptors for cultivated and wild sunflower. IBPGR Secretariat, Rome, Italy 1985, 37. International Board for Plant Genetic Resources (IBPGR).
14. Li JT, Yang J, Chen DC, Zhang XL, Tang ZS. An optimized mini-preparation method to obtain high-quality genomic DNA from mature leaves of sunflower. Genet Mol Res 2007, 6(Suppl 4):1064-1071.
15. Tang S, Yu JK, Slabaugh MB, Shintani DK, Knapp SJ. Simple sequence repeat map of the sunflower genome. Theor Appl Genet 2002, 105:1124-1136. 10.1007/s00122-002-0989-y, 12582890.
16. Paniego N, Echaide M, Munoz M, Fernandez L, Torales S, Faccio P, Fuxan I, Carrera M, Zandomeni R, Suarez EY, Hopp HE. Microsatellite isolation and characterization in sunflower (Helianthus annuus L.). Genome 2002, 45:34-43. 10.1139/g01-120, 11908666.
17. Colbert T, Till BJ, Tompa R, Reynolds S, Steine MN, Yeung AT, McCallum CM, Comai L, Henikoff S. High-throughput screening for induced point mutations. Plant Physiol 2001, 126:480-484. 10.1104/pp.126.2.480, 1540114, 11402178.
18. Zerr T, Henikoff S. Automated band mapping in electrophoretic gel images using background information. Nucleic Acids Res 2005, 33:2806-2812. 10.1093/nar/gki580, 1126905, 15894797.
19. Chapman MA, Pashley CH, Wenzler J, Hvala J, Tang S, Knapp SJ, Burke JM. A genomic scan for selection reveals candidates for genes involved in the evolution of cultivated sunflower (Helianthus annuus). Plant Cell 2008, 20(Suppl 11):2931-45. 2613673, 19017747.
20. Iqbal MA, Sadaqat HA, Khan IA. Estimation of genetic diversity among sunflower genotypes through random amplified polymorphic DNA analysis. Genet Mol Res 2008, 7(Suppl 4):1408-13.
21. Lai Z, Kane NC, Zou Y, Rieseberg LH. Natural Variation in Gene Expression Between Wild and Weedy Populations of Helianthus annuus. Genetics 2008, 179:1881-1890. 10.1534/genetics.108.091041, 2516066, 18689879.
22. Lai Z, Livingstone K, Zou Y, Church SA, Knapp SJ, Andrews J, Rieseberg LH. Identification and mapping of SNPs from ESTs in sunflower. Theor Appl Genet 2005, 111:1532-44. 10.1007/s00122-005-0082-4, 2442914, 16205907.
23. Pérez-Vich B, Berry ST, Velasco L, Fernández-Martínez JM, Gandhi S, Freeman C, Heesacker A, Knapp SJ, Leon AJ. Molecular mapping of nuclear malesterility genes in sunflower. Crop Sci 2005, 54:1851-7.
24. Rojas-Barros P, Hu J, Jan CC. Molecular mapping of an apical branching gene of cultivated sunflower (Helianthus annuus L.). Theor Appl Genet 2008, 117:19-28. 10.1007/s00122-008-0748-9, 18389209.
25. Yue B, Cai X, Vick B, Hu J. Genetic characterization and molecular mapping of a chlorophyll deficiency gene in sunflower (Helianthus annuus). J Plant Physiol 2009, 166:644-651. 10.1016/j.jplph.2008.09.008, 18947900.
26. Yue B, Vick BA, Yuan W, Hu J. Mapping one of the 2 genes controlling lemon ray flower color in sunflower (Helianthus annuus L.). J Hered 2008, 99:564-7. 10.1093/jhered/esn033, 18477587.
27. Tamborindeguy C, Ben C, Liboz T, Gentzbittel L. Sequence evaluation of four specific cDNA libraries for developmental genomics of sunflower. Mol Gen Genomics 2004, 271:367-375.
28. Feng J, Vick BA, Lee MK, Zhang HB, Jan CC. Construction of BAC and BIBAC libraries from sunflower and identification of linkage group-specific clones by overgo hybridization. Theor Appl Genet 2006, 113:23-32. 10.1007/s00122-006-0265-7, 16612648.
29. Nehnevajova E, Herzig R, Federer G, Erismann KH, Schwitzguébel JP. Chemical mutagenesis - a promising technique to increase metal concentration and extraction in sunflowers. Int J Phytoremediation 2007, 9(Suppl 2):149-65.
30. Skorić D, Jocić S, Sakac Z, Lecić N. Genetic possibilities for altering sunflower oil quality to obtain novel oils. Can J Physiol Pharmacol 2008, 86(Suppl 4):215-21.
31. Hvarleva T, Bakalova A, Chepinski I, Hristova-Cherbadji M, Hristov M, Atanasov A. Characterization of Bulgarian sunflower cultivars and inbred lines with microsatellite markers. Biotechnol & Biotechnol Eq 2007, 408-412.
32. Solodenko A, Sivolap Y. Genotyping of Helianthus based on microsatellite sequences. HELIA 2005, 28(Suppl 42):19-26.
33. Till BJ, Reynolds SH, Weil C, Springer N, Burtner C, Young K, Bowers E, Codomo CA, Enns LC, Odden AR, Greene EA, Comai L, Henikoff S. Discovery of induced point mutation in maize genes by TILLING. BMC Plant Biol 2004, 4:12. 10.1186/1471-2229-4-12, 512284, 15282033.
34. Carlsson1 AS, LaBrie1 ST, Kinney AJ, von Wettstein-Knowles P, Browse J. A KAS2 cDNA complements the phenotypes of the Arabidopsis fab1 mutant that differs in a single residue bordering the substrate binding pocket. Plant J 2002, 29(6):761-770. 10.1046/j.1365-313X.2002.01253.x, 12148534.
35. McGuire KA, McGuire JN, von Wettstein-Knowles P. Acyl carrier protein (ACP) inhibition and other differences between β-ketoacyl-synthase (KAS) I and II. Biochem Soc Transactions 2000, 28. part 6.
36. Abbadi A, Brummel M, Spener F. Knockout of the regulatory site of 3-ketoacyl-ACP synthase III enhances short- and medium-chain acyl ACP synthesis. Plant J 2000, 24(Suppl 1):1-9.
37. Shanklin J, Cahoon EB. Desaturation and related modifications of fatty acids. Annu Rev Plant Physiol Plant Mol Biol 1998, 49:611-641. 10.1146/annurev.arplant.49.1.611, 15012248.
38. Smith MA, Cross AR, Jones OTG, Griffiths WT, Stymne S, Stobart K. Electron-transport components of the 1-acyl-2-oleoyl-snglycerol-3-phosphocholine D12-desaturase (D12-desaturase) in microsomal preparations from developing safflower (Carthamus tinctorius L.) cotyledons. Biochem J 1990, 272:23-29. 1149651, 2264826.
39. Radwan O, Mouzeyar S, Venisse JS, Nicolas P, Bouzid MF. Resistance of sunflower to the biotrophic oomycete Plasmopara halstedii is associated with a delayed hypersensitive response within the hypocotyls. Journal of Experimental Botany 2005, 56(Suppl 420):2683-2693.
40. Sackston WE. Downy mildew of sunflower. The downy mildews 1981, 545-575. Academic Press, London, UK, Spencer DM.
41. Gundaev AI. Basic principles of sunflower selection. Genetic Principles of Plant Selection, Nauka, Moscow 1971, 417-465. (Transl. Department of the Secretary of State, Ottawa, Canada, 1972).
42. Ivanov P, Petakov D, Nikolova V, Pentchev E. Sunflower breeding for high palmitic acid content in the oil. Proceedings of the 12th International Sunflower Conference, Paris 1988, 463-465. International Sunflower Association.
43. Voinnet O. RNA silencing: small RNAs as ubiquitous regulators of gene expression. Curr Opin Plant Biol 2002, 5(Suppl 5):444-451.
44. Tissier AF, Marillonnet S, Klimyuk V, Patel K, Torres MA, Murphy G, Jones JD. Multiple independent defective suppressor-mutator transposon insertions in Arabidopsis: a tool for functional genomics. Plant Cell 1999, 11(Suppl 10):1841-1852. 144107, 10521516.
45. Barkley NA, Wang ML. Application of TILLING and EcoTILLING as reverse genetic approaches to elucidate the function of genes in plants and animals. Curr Gen 2008, 9:212-226.
46. Till BJ, Reynolds SH, Greene EA, Codomo CA, Enns LC, Johnson JE, Burter C, Odden AR, Young K, Taylor NE, Henikoff JG, Comai L, Henikoff S. Large-scale discovery of induced point mutations with high-throughput TILLING. Genome Res 2003, 13:524-530. 10.1101/gr.977903, 430291, 12618384.
47. Comai L, Henikoff S. TILLING: practical single-nucleotide mutation discovery. Plant J 2006, 45:684-694. 10.1111/j.1365-313X.2006.02670.x, 16441355.
48. Hohmann U, Jacobs G, Jung C. An EMS mutagenesis protocol for sugar beet and isolation of non-bolting mutants. Plant Breeding 2005, 124:317-321.
49. Gottschalk W, Wolf G. Induced mutations in plant breeding. Monograph on Theoretical and Applied Genetics 7 1983, Springer, Berlin Heidelberg New York.
50. Caldwell DG, McCallum N, Shaw P, Muehlbauer GJ, Marshall DF, Waugh R. A structured mutant population for forward and reverse genetics in Barley (Hordeum vulgare L.). Plant J 2004, 40:143-50. 10.1111/j.1365-313X.2004.02190.x, 15361148.
51. Menda N, Semel Y, Peled D, Eshed Y, Zamir D. In silico screening of a saturated mutation library of tomato. Plant J 2004, 38:861-872. 10.1111/j.1365-313X.2004.02088.x, 15144386.
52. Xin Z, Wang ML, Barkley NA, Burow G, Franks C, Pederson G, Burke J. Applying genotyping (TILLING) and phenotyping analyses to elucidate gene function in a chemically induced sorghum mutant population. BMC Plant Biol 2008, 8:103. 10.1186/1471-2229-8-103, 2572618, 18854043.
53. Oleykowski CA, Mullins CRB, Godwin AK, Yeung AT. Mutation detection using a novel plant endonuclease. Nucleic Acids Res 1998, 26:4597-4602. 10.1093/nar/26.20.4597, 147896, 9753726.
54. Yang B, Wen X, Kodali NS, Oleykowski CA, Miller CG, Kulinski J, Besack D, Yeung JA, Kowalski D, Yeung AT. Purification, cloning and characterization of the CelI nuclease. Biochemistry 2000, 39:3533-3541. 10.1021/bi992376z, 10736152.
55. Talamè V, Bovina R, Sanguineti MC, Tuberosa R, Lundqvist U, Salvi S. TILLMore, a resource for the discovery of chemically induced mutants in barley. Plant Biotechnol J 2008, 6:477-485. 10.1111/j.1467-7652.2008.00341.x, 18422888.
56. Gottwald S, Bauer P, Komatsuda T, Lundqvist U, Stein N. TILLING in the two-rowed barley cultivar 'Barke' reveals preferred sites of functional diversity in the gene HvHox1. BMC Res Notes 2009, 2:258. 10.1186/1756-0500-2-258, 2803498, 20017921.
57. Himelblau E, Gilchrist EJ, Buono K, Bizzell C, Mentzer L, Vogelzang R, Osborn T, Amasino RM, Parkin IAP, Haughn GW. Forward and reverse genetics of rapid-cycling Brassica oleracea. Theor Appl Genet 2009, 118:953-961. 10.1007/s00122-008-0952-7, 19132334.
58. Till B, Cooper J, Thai TH, Colowit P, Greene EA, Henikoff S, Comai L. Discovery of chemically induced mutations in rice by TILLING. BMC Plant Biol 2007, 7:19. 10.1186/1471-2229-7-19, 1858691, 17428339.
59. Suzuki T, Eiguchi M, Kumamaru T, Satoh H, Matsusaka H, Moriguchi K, Nagato Y, Kurata N. MNU-induced mutant pools and high performance TILLING enable finding of any gene mutation in rice. Mol Genet Genomics 2008, 279:213-223. 10.1007/s00438-007-0293-2, 17952471.