Surface-sensitive Raman spectroscopy of collagen I fibrils

Biophysical Journal

Volumn 100, Issue 7, 2011, Pages 1837-1845

  Gullekson, Corinne ^a   Lucas, Leanne ^a   Hewitt, Kevin ^a   Kreplak, Laurent ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTA;

EID: 79959631094     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2011.02.026     Document Type: Article

References (44)

1. Bonifacio, A., and V. Sergo. 2010. Effects of sample orientation in Raman microspectroscopy of collagen fibers and their impact on the interpretation of the Amide III band. Vib. Spectrosc. 53:314-317.
2. Heino, J., M. Huhtala,..., M. S. Johnson. 2009. Evolution of collagenbased adhesion systems. Int. J. Biochem. Cell Biol. 41:341-348.
3. Kadler, K. E., D. F. Holmes,..., J. A. Chapman. 1996. Collagen fibril formation. Biochem. J. 316:1-11. (Pubitemid 26158194)
4. Myllyharju, J. 2005. Intracellular post-translational modifications of collagens. Top. Curr. Chem. 247:115-147. (Pubitemid 44423499)
5. Dominguez, L. J., M. Barbagallo, and L. Moro. 2005. Collagen overglycosylation: a biochemical feature that may contribute to bone quality. Biochem. Biophys. Res. Commun. 330:1-4. (Pubitemid 40394928)
6. Peterkofsky, B. 1991. Ascorbate requirement for hydroxylation and secretion of procollagen: relationship to inhibition of collagen synthesis in scurvy. Am. J. Clin. Nutr. 54(Suppl):1135S-1140S.
7. Fessler, L. I., R. E. Burgeson,..., J. H. Fessler. 1973. Collagen synthesis: a disulfide-linked collagen precursor in chick bone. Proc. Natl. Acad. Sci. USA. 70:2993-2996.
8. Shoulders, M. D., and R. T. Raines. 2009. Collagen structure and stability. Annu. Rev. Biochem. 78:929-958.
9. Holmes, D. F., C. J. Gilpin,..., K. E. Kadler. 2001. Corneal collagen fibril structure in three dimensions: structural insights into fibril assembly, mechanical properties, and tissue organization. Proc. Natl. Acad. Sci. USA. 98:7307-7312. (Pubitemid 32567944)
10. Rich, A., and F. H. C. Crick. 1961. The molecular structure of collagen. J. Mol. Biol. 3:483-506.
11. Okuyama, K., X. Z. Xu,..., K. Noguchi. 2006. Revision of collagen molecular structure. Biopolymers. 84:181-191.
12. Cowan, P. M., S. McGavin, and A. C. T. North. 1955. The polypeptide chain configuration of collagen. Nature. 176:1062-1064.
13. Bhattacharjee, A., and M. Bansal. 2005. Collagen structure: the Madras triple helix and the current scenario. IUBMB Life. 57:161-172. (Pubitemid 40695154)
14. Zagrovic, B., G. Jayachandran,..., V. S. Pande. 2005. How large is an a-helix? Studies of the radii of gyration of helical peptides by smallangle x-ray scattering and molecular dynamics. J. Mol. Biol. 353:232-241. (Pubitemid 41356608)
15. Hudson, S. D., and G. Chumanov. 2009. Bioanalytical applications of SERS (surface-enhanced Raman spectroscopy). Anal. Bioanal. Chem. 394:679-686.
16. Sakamoto, K., G. Mizutani, and S. Ushioda. 1993. Absolute Ramanscattering cross section of a surface-adsorbed layer: amorphous nitrobenzene on Ni111. Phys. Rev. B Condens. Matter. 48:8993-9005.
17. Nie, S. M., and S. R. Emory. 1997. Probing single molecules and single nanoparticles by surface-enhanced Raman scattering. Science. 275:1102-1106. (Pubitemid 27097304)
18. Neacsu, C. C., J. Dreyer,..., M. B. Raschke. 2006. Scanning-probe Raman spectroscopy with single-molecule sensitivity. Phys. Rev. B. 73:193406.
19. Shanmukh, S., L. Jones,..., R. A. Tripp. 2006. Rapid and sensitive detection of respiratory virus molecular signatures using a silver nanorod array SERS substrate. Nano Lett. 6:2630-2636. (Pubitemid 46076961)
20. Premasiri, W. R., D. T. Moir,..., L. D. Ziegler. 2005. Characterization of the surface enhanced Raman scattering (SERS) of bacteria. J. Phys. Chem. B. 109:312-320. (Pubitemid 40120975)
21. Kneipp, K., H. Kneipp,..., M. S. Feld. 1998. Detection and identification of a single DNA base molecule using surface-enhanced Raman scattering (SERS). Phys. Rev. E. 57:R6281-R6284. (Pubitemid 128625027)
22. Stewart, S., and P. M. Fredericks. 1999. Surface-enhanced Raman spectroscopy of amino acids adsorbed on an electrochemically prepared silver surface. Spectrochim. Acta [A]. 55:1641-1660. (Pubitemid 129667471)
23. Deckert-Gaudig, T., and V. Deckert. 2010. Tip-enhanced Raman scattering (TERS) and high-resolution bio nano-analysis-a comparison. Phys. Chem. Chem. Phys. 12:12040-12049.
24. Ichimura, T., S. Fujii,..., S. Kawata. 2009. Subnanometric near-field Raman investigation in the vicinity of a metallic nanostructure. Phys. Rev. Lett. 102:186101.
25. Camden, J. P., J. A. Dieringer,..., R. P. Van Duyne. 2008. Controlled plasmonic nanostructures for surface-enhanced spectroscopy and sensing. Acc. Chem. Res. 41:1653-1661.
26. Wu, X. B., M. Q. Zhang,..., Q. Tian. 2010. Experimental research on double-walled carbon nanotubes by using tip-enhanced Raman spectroscopy. Journal of the Korean Physical Society. 56:1103-1108.
27. Frushour, B. G., and J. L. Koenig. 1975. Raman scattering of collagen, gelatin, and elastin. Biopolymers. 14:379-391.
28. Jastrzebska, M., R. Wrzalik,..., B. Cwalina. 2003. Raman spectroscopic study of glutaraldehyde-stabilized collagen and pericardium tissue. J. Biomater. Sci. Polym. Ed. 14:185-197.
29. Lin-Vien, D. 1991. The Handbook of Infrared and Raman Characteristic Frequencies of Organic Molecules. Academic Press, Boston, MA.
30. Eysel, H. H., and K. T. Lim. 1988. Raman intensities of phosphate and diphosphate ions in aqueous-solution. J Raman Spectrosc. 19:535-539.
31. Stewart, S., and P. M. Fredericks. 1999. Surface-enhanced Raman spectroscopy of peptides and proteins adsorbed on an electrochemically prepared silver surface. Spectrochim. Acta [A]. 55:1615-1640. (Pubitemid 129667470)
32. De Gelder, J., K. de Gussem,..., L. Moens. 2007. Reference database of Raman spectra of biological molecules. J Raman Spectrosc. 38:1133-1147.
33. Stranahan, S. M., and K. A. Willets. 2010. Super-resolution optical imaging of single-molecule SERS hot spots. Nano Lett. 10:3777-3784.
34. Dollish, F. R., W. G. Fateley, and F. F. Bentley. 1974. Characteristic Raman Frequencies of Organic Compounds. Wiley, New York.
35. Jeffers, R. B., and J. B. Cooper. 2010. FT-surface-enhanced Raman scattering of phenylalanine using silver-coated glass fiber filters. Spectrosc. Lett. 43:220-225.
36. Deckert-Gaudig, T., E. Rauls, and V. Deckert. 2010. Aromatic amino acid monolayers sandwiched between gold and silver: a combined tip-enhanced Raman and theoretical approach. J. Phys. Chem. C. 114:7412-7420.
37. Joo, S. W., and K. Kim. 2004. Adsorption of phenylacetylene on gold nanoparticle surfaces investigated by surface-enhanced Raman scattering. J Raman Spectrosc. 35:549-554.
38. Ferraro, J. R., and K. Nakamoto. 1994. Introductory Raman Spectroscopy. Academic Press, Boston, MA.
39. Anema, J. R., A. G. Brolo,..., C. Bittencourt. 2010. Surface-enhanced Raman scattering from polystyrene on gold clusters. J Raman Spectrosc. 41:745-751.
40. Pande, J., C. Pande,..., J. H. Kägi. 1986. Raman, infrared, and circular dichroism spectroscopic studies on metallothionein: a predominantly "turn"-containing protein. Biochemistry. 25:5526-5532. (Pubitemid 17168288)
41. Chou, P. Y., and G. D. Fasman. 1974. Prediction of protein conformation. Biochemistry. 13:222-245.
42. Copeland, R. A., and T. G. Spiro. 1986. Ultraviolet Raman hypochromism of the tropomyosin amide modes-a new method for estimating a-helical content in proteins. J. Am. Chem. Soc. 108:1281-1285.
43. McColl, I. H., E. W. Blanch,..., L. D. Barron. 2003. A new perspective on βsheet structures using vibrational Raman optical activity: from poly (L-lysine) to the prion protein. J. Am. Chem. Soc. 125:10019-10026. (Pubitemid 36994931)
44. Staple, D. B., M. Loparic,..., L. Kreplak. 2009. Stretching, unfolding, and deforming protein filaments adsorbed at solid-liquid interfaces using the tip of an atomic-force microscope. Phys. Rev. Lett. 102:128302.