The GTPase function of YvcJ and its subcellular relocalization are dependent on growth conditions in Bacillus subtilis

Journal of Molecular Microbiology and Biotechnology

Volumn 20, Issue 3, 2011, Pages 156-167

  Pompeo, Frédérique ^a   Luciano, Jennifer ^a   Brochier Armanet, Céline ^a   Galinier, Anne ^a  

^a AIX MARSEILLE UNIVERSITÉ   (France)

Author keywords

Bacillus subtilis; Competence; GTPase; Phosphorylation; YvcJ

Indexed keywords

GUANOSINE TRIPHOSPHATASE; GUANOSINE TRIPHOSPHATASE YVCJ; LYSINE; UNCLASSIFIED DRUG;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL GENOME; BACTERIAL GROWTH; CELLULAR DISTRIBUTION; CONTROLLED STUDY; CULTURE MEDIUM; ENZYME ACTIVITY; ENZYME LOCALIZATION; ENZYME PHOSPHORYLATION; GENE TRANSFER; GENETIC CONSERVATION; GROWTH CURVE; MUTATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEIN MOTIF;

AMINO ACID SEQUENCE; BACILLUS SUBTILIS; CONSERVED SEQUENCE; GTP PHOSPHOHYDROLASES; MULTIGENE FAMILY; MUTATION; PHOSPHORYLATION; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT FUSION PROTEINS; SEQUENCE DELETION;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS);

EID: 79959539392     PISSN: 14641801     EISSN: 16602412     Source Type: Journal    
DOI: 10.1159/000329298     Document Type: Article

References (38)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 1997; 25: 3389-3402. (Pubitemid 27359211)
2. Barrick JE, Corbino KA, Winkler WC, Nahvi A, Mandal M, Collins J, Lee M, Roth A, Sudarsan N, Jona I, Wickiser JK, Breaker RR: New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proc Natl Acad Sci USA 2004; 101: 6421-6426. (Pubitemid 38585989)
3. Carballido-Lopez R: The bacterial actin-like cytoskeleton. Microbiol Mol Biol Rev 2006; 70: 888-909. (Pubitemid 44958260)
4. Chen I, Dubnau D: DNA uptake during bacterial transformation. Nat Rev Microbiol 2004; 2: 241-249. (Pubitemid 39490085)
5. Chen I, Provvedi R, Dubnau D: A macromolecular complex formed by a pilin-like protein in competent Bacillus subtilis. J Biol Chem 2006;281:21720-21727. (Pubitemid 44181875)
6. Claessen D, Emmins R, Hamoen LW, Daniel RA, Errington J, Edwards DH: Control of the cell elongation-division cycle by shuttling of pbp1 protein in Bacillus subtilis. Mol Microbiol 2008; 68: 1029-1046. (Pubitemid 351581066)
7. Defeu Soufo HJ, Reimold C, Linne U, Knust T, Gescher J, Graumann PL: Bacterial translation elongation factor EF-Tu interacts and colocalizes with actin-like MreB protein. Proc Natl Acad Sci USA 2010; 107: 3163-3168.
8. Dubnau D: The regulation of genetic competence in Bacillus subtilis Mol Microbiol 1991; 5: 11-18. (Pubitemid 21895935)
9. Egger LA, Park H, Inouye M: Signal transduction via the histidyl-aspartyl phosphorelay. Genes Cells 1997; 2: 167-184. (Pubitemid 127688567)
10. Foulquier E, Pompeo F, Bernadac A, Espinosa L, Galinier A: The YvcK protein is required for morphogenesis via localization of PBP1 under gluconeogenic growth conditions in Bacillus subtilis. Mol Microbiol 2011; 80: 309-318.
11. Galinier A, Haiech J, Kilhoffer MC, Jaquinod M, Stülke J, Deutscher J, Martin-Verstraete I: The Bacillus subtilis crh gene encodes a HPrlike protein involved in carbon catabolite repression. Proc Natl Acad Sci USA 1997; 94: 8439-8444. (Pubitemid 27335057)
12. Görke B, Foulquier E, Galinier A: YvcK of Bacillus subtilis is required for a normal cell shape and for growth on Krebs cycle intermediates and substrates of the pentose phosphate pathway. Microbiology 2005; 151: 3777-3791. (Pubitemid 41632088)
13. Guindon S, Gascuel O: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003; 52: 696-704. (Pubitemid 37365050)
14. Hahn J, Maier B, Haijema BJ, Sheetz M, Dubnau D: Transformation proteins and DNA uptake localize to the cell poles in Bacillus subtilis. Cell 2005;122:59-71. (Pubitemid 40977940)
15. Hamoen LW, Venema G, Kuipers OP: Controlling competence in Bacillus subtilis: Shared use of regulators. Microbiology 2003; 149: 9-17. (Pubitemid 36175672)
16. Hudson KD, Corfe BM, Kemp EH, Feavers IM, Coote PJ, Moir A: Localization of geraa and gerac germination proteins in the Bacillus subtilis spore. J Bacteriol 2001;183:4317-4322. (Pubitemid 32568084)
17. Jobb G, von Haeseler A, Strimmer K: Treefinder: A powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol 2004; 4: 18.
18. Jones LJ, Carballido-Lopez R, Errington J: Control of cell shape in bacteria: Helical, actinlike filaments in Bacillus subtilis. Cell 2001; 104: 913-922. (Pubitemid 32289283)
19. Kalamorz F, Reichenbach B, Marz W, Rak B, Görke B: Feedback control of glucosamine- 6-phosphate synthase GlmS expression depends on the small RNA GlmZ and involves the novel protein YhbJ in Escherichia coli. Mol Microbiol 2007; 65: 1518-1533. (Pubitemid 47347835)
20. Kammann M, Laufs J, Schell J, Gronenborn B: Rapid insertional mutagenesis of DNA by polymerase chain reaction (PCR). Nucleic Acids Res 1989;17:5404. (Pubitemid 19173384)
21. Katoh K, Toh H: Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 2008; 9: 286-298. (Pubitemid 351890825)
22. Kirstein J, Strahl H, Moliere N, Hamoen LW, Turgay K: Localization of general and regulatory proteolysis in Bacillus subtilis cells. Mol Microbiol 2008; 70: 682-694.
23. Kobayashi K, Ehrlich SD, Albertini A, et al.: Essential Bacillus subtilis genes. Proc Natl Acad Sci USA 2003;100:4678-4683. (Pubitemid 36457789)
24. Kunst F, Rapoport G: Salt stress is an environmental signal affecting degradative enzyme synthesis in Bacillus subtilis. J Bacteriol 1995; 177: 2403-2407.
25. Le SQ, Gascuel O: An improved general amino acid replacement matrix. Mol Biol Evol 2008; 25: 1307-1320. (Pubitemid 351882003)
26. Leipe DD, Koonin EV, Aravind L: Evolution and classification of P-loop kinases and related proteins. J Mol Biol 2003; 333: 781-815. (Pubitemid 37268019)
27. Lewis PJ, Marston AL: Gfp vectors for controlled expression and dual labelling of protein fusions in Bacillus subtilis. Gene 1999;227:101-110.
28. Luciano J, Foulquier E, Fantino JR, Galinier A, Pompeo F: Characterization of YvcJ, a conserved P-loop-containing protein, and its implication in competence in Bacillus subtilis. J Bacteriol 2009; 191: 1556-1564.
29. Matte A, Tari LW, Delbaere LT: How do kinases transfer phosphoryl groups? Structure 1998; 6: 413-419. (Pubitemid 28205513)
30. Michaelis AM, Gitai Z: Dynamic polar sequestration of excess MurG may regulate enzymatic function. J Bacteriol 2010; 192: 4597-4605.
31. Moreno MS, Schneider BL, Maile RR, Weyler W, Saier MH Jr: Catabolite repression mediated by the ccpa protein in Bacillus subtilis: Novel modes of regulation revealed by whole-genome analyses. Mol Microbiol 2001;39:1366-1381. (Pubitemid 32225145)
32. Philippe H: MUST, a computer package of management utilities for sequences and trees. Nucleic Acids Res 1993; 21: 5264-5272. (Pubitemid 23342542)
33. Pompeo F, Granet Y, Lavergne JP, Grangeasse C, Nessler S, Jault JM, Galinier A: Regulation and mutational analysis of the HPr kinase/ phosphorylase from Bacillus subtilis. Biochemistry 2003; 42: 6762-6771. (Pubitemid 36666117)
34. Poncet S, Mijakovic I, Nessler S, Gueguen-Chaignon V, Chaptal V, Galinier A, Boel G, Maze A, Deutscher J: HPr kinase/phosphorylase, a Walker motif A-containing bifunctional sensor enzyme controlling catabolite repression in Gram-positive bacteria. Biochim Biophys Acta 2004; 1697: 123-135. (Pubitemid 38326766)
35. Ronquist F, Huelsenbeck JP: MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003; 19: 1572-1574. (Pubitemid 37038874)
36. Sambrook J, Fritsch EF, Maniatis T: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, Cold Spring Harbor Laboratory Press, 1989.
37. Saraste M, Sibbald PR, Wittinghofer A: The Ploop - A common motif in ATP- and GTPbinding proteins. Trends Biochem Sci 1990; 15: 430-434. (Pubitemid 20376582)
38. Winkler WC, Nahvi A, Roth A, Collins JA, Breaker RR: Control of gene expression by a natural metabolite-responsive ribozyme. Nature 2004; 428: 281-286. (Pubitemid 38418792)