A method for testing drought tolerance in Fragaria based on fast screening for water deficit response and use of associated AFLP and EST candidate gene markers

Euphytica

Volumn 180, Issue 3, 2011, Pages 385-409

  Razavi, Farzaneh ^a,c   De Keyser, Ellen ^b   De Riek, Jan ^b   Van Labeke, Marie Christine ^a  

^a GHENT UNIVERSITY   (Belgium)

^b INSTITUTE FOR AGRICULTURAL AND FISHERIES RESEARCH ILVO   (Belgium)

^c AEROSPACE RESEARCH INSTITUTE   (Iran)

Author keywords

AFLP markers; Clustering analysis; Drought stress; EST marker; Fragaria ananassa; Fragariachiloensis; Fragariavesca; Genetic relationship; Strawberry cultivar; Water deficit

Indexed keywords

FRAGARIA; FRAGARIA CHILOENSIS; FRAGARIA VESCA; FRAGARIA X ANANASSA;

EID: 79959528468     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-011-0398-x     Document Type: Article

References (151)

1. Aharoni A, Keizer LCP, van Den Broeck HC, Blanco-Portales R, Munoz-Blanco J, Bois G, Smit P, De Vos RCH, O'Connell A (2002) Novel insight into vascular, stress, and auxin-dependent and -independent gene expression programs in strawberry, a non-climacteric fruit. Plant Physiol 129: 1019-1031.
2. Allen RD (1995) Dissection of oxidative stress tolerance using transgenic plants. Plant Physiol 107: 1049-1054.
3. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W et al (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
4. Andersen JR, Lubberstedt T (2003) Functional markers in plants. Trends Plant Sci 8: 554-560.
5. Arnau G, Lallemand J, Bourgoin M (2003) Fast and reliable strawberry cultivar identification using inter simple sequence repeat (ISSR) amplification. Euphytica 129: 69-79.
6. Ashley MV, Wilk JA, Styan SMN, Craft KJ, Jones KL, Feldheim KA, Lewers KS, Ashman TL (2003) High variability and disomic segregation of microsatellites in octoploid Fragaria virginiana Mill (Rosaceae). Theor Appl Genet 107: 1201-1207.
7. Badawi GH, Yamauchi Y, Shimada E, Sasaki R, Kawano N, Tanaka K, Tanaka K (2004) Enhanced tolerance to salt stress and water deficit by overexpressing superoxide dismutase in tobacco (Nicotiana tabacum) chloroplasts. Plant Sci 166: 919-928.
8. Bagnoli F, Giannino D, Caparrini S, Camussi A, Mariotti D, Racchi ML (2002) Molecular cloning, characterisation and expression of a manganese superoxide dismutase gene from peach (Prunus persica [L.] Batsch). Mol Genet Genomics 267: 321-328.
9. Barr HD, Weatherley PE (1962) A re-examination of the relative turgidity technique for estimating water deficit in leaves. Aust J Biol Sci 15: 413-428.
10. Bartels D (2001) Targeting detoxification pathways: an efficient approach to obtain plants with multiple stress tolerance. Trends Plant Sci 6: 284-286.
11. Bartels D, Souer E (2003) Molecular responses of higher plants to dehydration. In: Hirt H, Shinozaki K (eds) Plant responses to abiotic stress. Springer-Verlag, Berlin, pp 9-38.
12. Bartels D, Sunkar R (2005) Drought and salt tolerance in plants. Crit Rev Plant Sci 24: 23-58.
13. Bassil NV, Gunn M, Folta K, Lewers K (2006) Microsatellite markers for Fragaria from 'Strawberry Festival' expressed sequence tags. Mol Ecol Notes 6: 473-476.
14. Belaj A, Satovic Z, Cipariani G, Baldoni L, Testolin R, Rallo L, Trujillo I (2003) Comparative study of the discriminating capacity of RAPD, AFLP and SSR markers and of their effectiveness in establishing genetic relationships in olive. Theor Appl Genet 107: 736-744.
15. Belo A, Zheng P, Luck S, Shen B, Meyer DJ, Li B, Tingey S, Rafalski A (2008) Whole genome scan detects an allelic variant of fad2 associated with increased oleic acid levels in maize. Mol Genet Genomics 279: 1-10.
16. Bohnert HJ, Nelson DE, Jensen RG (1995) Adaptations to environmental stresses. Plant Cell 7: 1099-1111.
17. Borsani O, Diaz P, Agius MF, Valpuesta C, Monza J (2001) Water stress generates an oxidative stress through the induction of a specific Cu/Zn superoxide dismutase in Lotus corniculatus leaves. Plant Sci 161: 757-763.
18. Bray EA (2002) Classification of genes differentially expressed during water-deficit stress in Arabidopsis thaliana: an analysis using microarray and differential expression data. Ann Bot 89: 803-811.
19. Bray EA (2004) Genes commonly regulated by water-deficit stress in Arabidopsis thaliana. J Exp Bot 55: 2331-2341.
20. Breseghello F, Sorrells MS (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172: 1165-1177.
21. Buhariwalla HK, Jayashree B, Eshwar K, Crouch JH (2005) Development of ESTs from chickpea roots and their use in diversity analysis of the Cicer genus. BMC Plant Biol 5: 1-14.
22. Caruso A, Morabito D, Delmotte F, Kahlem G, Carpin S (2002) Dehydrin induction during drought and osmotic stress in Populus. Plant Physiol Biochem 40: 1033-1042.
23. Cattivelli L, Rizza F, Badeck FW, Mazzucotelli E, Mastrangelo AM, Francia E, Mare C, Tondelli A, Stanca AM (2008) Drought tolerance improvement in crop plants: an integrated view from breeding to genomics. Field Crop Res 105: 1-14.
24. Causse M, Duffe P, Gomez MC, Buret M, Damidaux R, Zamir D, Gur A, Chevalier C, Lemaire-Chamley M, Rothan C (2004) A genetic map of candidate genes and QTLs involved in tomato fruit size and composition. J Exp Bot 55: 1671-1685.
25. Chandler CK, Ferree DC (1990) Response of 'Raritan' and 'Surecrop' strawberry plants to drought stress. Fruit Varieties J 44: 183-185.
26. Chavez MM, Maroco JP, Pereira JS (2003) Understanding plant responses to drought from gene to whole plant. Funct Plant Boil 30: 239-264.
27. Chen TH, Murata N (2002) Enhancement of tolerance of abiotic stress by metabolic engineering of betaines and other compatible solutes. Curr Opin Plant Biol 5: 250-257.
28. Chen X, Salamini F, Gebhardt C (2001) A potato molecular-function map for carbohydrate metabolism and transport. Theor Appl Genet 102: 284-295.
29. Clarke JM, McCaig TN (1982) Evaluation of techniques for drought resistance in wheat. Crop Sci 22: 503-506.
30. Comadran J, Russell JR, van Eeuwijk FA, Ceccarelli S, Grando S, Baum M, Stanca AM, Pecchioni N, Mastrangelo AM, Akar T et al (2008) Mapping adaptation of barley to droughted environments. Euphytica 161: 35-45.
31. Davik J, Honne BI (2005) Genetic variance and breeding values for resistance to a wind-born disease [Sphaerotheca macularis (Wallr. ex Fr.)] in strawberry (Fragaria × ananassa Duch.) estimated by exploring mixed and spatial models and pedigree information. Theor Appl Genet 111: 256-264.
32. De Keyser E, Scariot V, Hand T, De Riek J (2006) EST markers in evergreen azalea: development and use for classifications compared to AFLP, microsatellite and morphological data. Acta Hort (ISHS) 763: 107-116.
33. De Keyser E, De Riek J, van Bockstaele E (2009) Discovery of species-wide EST-derived markers in Rhododendron by intron-flanking primer design. Mol Breed 23: 171-178.
34. De Riek J, Dendauw J, Mertens M, De Loose M, Heursel J, van Bockstaele E (1999) Validation of criteria for the selection of AFLP markers to assess the genetic variation of a breeders' collection of evergreen azaleas. Theor Appl Genet 99: 1155-1165.
35. Degani C, Rowland LJ, Levi A, Hortynski JA, Galletta GJ (1998) DNA fingerprinting of strawberry (Fragaria × ananassa) cultivars using randomly amplified polymorphic DNA (RAPD) markers. Euphytica 102: 247-253.
36. Degani C, Rowland LJ, Saunders JA, Hokanson SC, Ogden EL, Golan-Goldhirsh A, Galleta GJ (2001) A comparison of genetic relationship measures in strawberry (Fragaria × ananassa Duch.) based on AFLPs, RAPDs, and pedigree data. Euphytica 117: 1-12.
37. Desikan R, Mackerness SAH, Hancock JT, Neill SJ (2001) Regulation of the Arabidopsis transcriptome by oxidative stress. Plant Physiol 127: 159-172.
38. Etienne C, Rothan C, Moing A, Plomion C, Bodenes C, Svanella-Dumas L, Cosson P, Pronier V, Monet R, Dirlewanger E (2002) Candidate genes and QTLs for sugar and organic acid content in peach [Prunus persica (L.) Batsch]. Theor Appl Genet 105: 145-159.
39. Flower DJ, Ludlow MM (1986) Contribution of osmotic adjustment to the dehydration tolerance of water-stressed pigeonpox [Cajanus cajan (L.) Millsp.] leaves. Plant Cell Environ 9: 33-40.
40. Folta KM, Davis TM (2006) Strawberry genes and genomics. Crit Rev Plant Sci 25: 399-415.
41. Forster BP, Ellis RP, Moir J, Talame V, Sanguineti MC, Tuberosa R, This D, TeulatMerah B, Ahmed I, Mariy SAEE, Bahri H, El-Ouahabi M, Zoumarou-Wallis N, El-Fellah M, Ben Salem M (2004) Genotype and phenotype associations with drought tolerance in barley tested in North Africa. Ann Appl Biol 144: 157-168.
42. 2. J Exp Bot 58: 2983-2992.
43. Garris AJ, McCouch SR, Kresovich S (2003) Population structure and its effects on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice Oryza sativa L. Genetics 165: 759-769.
44. Gehrman H, Lenz FR (1991) Wassersbedrijf und einfluss von wassermangel bei erdbeere. I. Blattfl achenentwicklung und trockensubstanzverteilung. Erwerbsobstbau 33: 14-17.
45. Gil-Ariza DJ, Amaya I, Botella MA, Munoz Blanco J, Caballero JL, Lopez-Aranda JM, Valpuesta V, Sanchez-Sevilla JF (2006) EST-derived polymorphic microsatellites from cultivated strawberry (Fragaria × ananassa) are useful for diversity studies and varietal identification among Fragaria species. Mol Ecol Notes 6: 1195-1197.
46. González-Martínez SC, Ersoz E, Brown GR, Wheeler NC, Neale DB (2006) DNA sequence variation and selection of tag single-nucleotide polymorphisms at candidate genes for drought-stress response in Pinus taeda L. Genetics 172: 1915-1926.
47. Govan CL, Simpson DW, Johnson AW, Tobutt KR, Sargent DJ (2008) A reliable multiplexed microsatellite set for genotyping Fragaria and its use in a survey of 60 F. × ananassa cultivars. Mol Breed 22: 649-661.
48. Graham J, McNichol RJ, McNichol JW (1996) A comparison of methods for the estimation of genetic diversity in strawberry cultivars. Theor Appl Genet 93: 402-406.
49. Gupta PK, Rustgi S (2004) Molecular markers from the transcribed/expressed region of the genome in higher plants. Funct Integr Genomics 4: 137-162.
50. Gupta PK, Rustgi S, Sharma S, Singh R, Kumar N, Balyam HS (2003) Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat. Mol Genet Genomics 270: 315-323.
51. Gupta PK, Rustgi S, Kulwal PL (2005) Linkage disequilibrium and association studies in higher plants: present status and future prospects. Plant Mol Biol 57: 461-485.
52. Haake V, Cook D, Riechmann JL, Pineda O, Thomashow MF, Zhang JZ (2002) Transcription factor CBF4 is a regular of drought adaptation in Arabidopsis. Plant Physiol 130: 639-648.
53. Hall D, Tegstrom C, Ingvarsson PK (2010) Using association mapping to dissect the genetic basis of complex traits in plants. Brief Funct Genomics 9: 157-165.
54. Hamblin MT, Mitchell SE, White GM, Gallego J, Kukatla R, Wing RA, Paterson AH, Kresovich S (2004) Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a diverse sample of Sorghum bicolor. Genetics 167: 471-483.
55. Hare PD, Cress WA, van Staden J (1999) Proline synthesis and degradation: a model system for stress-related signal transduction. J Exp Bot 50: 413-434.
56. Hegde VS, Mishra SK (2009) Landraces of cowpea Vigna unguiculata (L.) Walp., as potential sources of genes for unique characters in breeding. Genet Resour Crop Evol 56: 615-627.
57. Hietaranta T, Linna MM (1997) Selecting cultivars for strawberry production in Finland-clone and cultivar trials. Acta Hort (ISHS) 439: 145-148.
58. Horvath GV, Turoczy Z, Cserhati M, Kis P, Dudits D, Torok K, Sass L, Dudits D (2006) Engineering of reactive species detoxification pathways for increasing stress tolerance in plants. In: Xu Z et al (eds) Biotechnology and sustainable agriculture 2006 and beyond. Springer, Dordrecht, pp 163-166.
59. Hubbard NL, Pharr DM, Huber SC (2006) Sucrose phosphate synthase and other sucrose metabolizing enzymes in fruits of various species. Physiol Plant 82: 191-196.
60. Hyten DL, Choi IY, Song Q, Shoemaker RC, Nelson RL, Costa JM, Specht JE, Cregan PB (2007) Highly variable patterns of linkage disequilibrium in multiple soybean populations. Genetics 175: 1937-1944.
61. Ingram J, Bartels D (1996) The molecular basis of dehydration tolerance in plants. Plant Physiol Plant Mol Biol 47: 377-403.
62. Ingram J, Chandler JW, Gallagher L, Salamini F, Bartels D (1997) Analysis of cDNA clones encoding sucrose-phosphate synthase in relation to sugar interconversions associated with dehydration in the resurrection plant Craferosfigma planfagineum Hochst. Plant Physiol 115: 113-121.
63. Iuchi S, Kobayashi M, Taji T, Naramoto M, Seki M, Kato T, Tabata S, Kakubari Y, Yamaguchi-Shinozaki K, Shinozaki K (2001) Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis. Plant J 27: 325-333.
64. Ivandic V, Thomas WTB, Nevo E, Zhang Z, Froster BP (2003) Association of simple sequence repeats with quantitative trait variation including biotic and abiotic stress tolerance in Hordeum spontaneum. Plant Breed 122: 300-304.
65. Jung S, Jesudurai C, Staton M, Du Z, Ficklin S, Cho I, Abbott A, Tomkins J, Main D (2004) GDR (Genome Database for Rosaceae): integrated web resources for Rosaceae genomics and genetics research. BMC Bioinform 5: 130.
66. Jung S, Staton M, Lee T, Blenda A, Svancara R, Abbott A, Main D (2008) GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data. Nucleic Acids Res 36: D1034-D1040.
67. Kashyap S, Kaur R, Kumar K (2005) Molecular characterization and genetic diversity in Fragaria genotypes as revealed by randomly amplified DNA polymorphisms. Acta Hort (ISHS) 696: 135-142.
68. Kepenek K, Koyuncu F (2002) Studies on the salt tolerance of some strawberry cultivars under glasshouse. Acta Hort (ISHS) 573: 297-304.
69. Keutgen AJ, Pawelzik E (2007) Modifications of strawberry fruit antioxidant pools and fruit quality under NaCl stress. J Agric Food Chem 55: 4066-4072.
70. Kim IJ, Lee BH, Jo J, Chung WI (2001) Sequence variability of nine cytosolic ascorbate peroxidases in polyploid strawberry. DNA Seq 11: 475-484.
71. Klamkowski K, Treder W (2006) Morphological and physiological responses of strawberry plants to water stress. Agric Conspec Sci 71: 159-165.
72. Klamkowski K, Treder W (2008) Response to drought stress of three strawberry cultivars grown under greenhouse conditions. J Fruit Ornam Plant Res 16: 179-188.
73. Korbin M, Kuras A, Zurawicz E (2002) Fruit plant germplasm characterisation using molecular markers generated in RAPD and ISSR-PCR. Cell Mol Biol Lett 7: 785-794.
74. Kraakman ATW, Niks RE, van der Berg PMMM, Stam P, van Eeuwijk FA (2004) Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics 168: 435-446.
75. Kraakman ATW, Martinez F, Mussiraliev B, van Eeuwijk FA, Niks RE (2006) Linkage disequilibrium mapping of morphological, resistance, and other agronomically relevant traits in modern spring barley cultivars. Mol Breed 17: 41-58.
76. Kuras A, Korbin M, Zurawicz E (2004) Comparison of suitability of RAPD and ISSR techniques for determination of strawberry (Fragaria × ananassa) relationship. Plant Cell Tiss Organ Cult 79: 189-193.
77. Lee YP, Kim SH, Bang JW, Lee HS, Kwak SS, Kwon SY (2007) Enhanced tolerance to oxidative stress in transgenic tobacco plants expressing three antioxidant enzymes in chloroplasts. Plant Cell Rep 26: 591-598.
78. Liu X, Baird WV (2003) Differential expression of genes regulated in response to drought or salinity stress in sunflower. Crop Sci 43: 678-687.
79. Liu Q, Kasuga M, Sakuma Y, Abe H, Miura S, Yamaguchi-Shinozaki K, Shinozaki K (1998) Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10: 1391-1406.
80. Llop-Tous I, Dominguez-Puigjaner E, Vendrell M (2002) Characterization of a strawberry cDNA clone homologous to calcium-dependent protein kinases that is expressed during fruit ripening and affected by low temperature. J Exp Bot 53: 2283-2285.
81. 2 accumulation, catalase (CAT) activity and CAT gene expression in wheat. J Exp Bot 56: 417-423.
82. Malatrasi M, Close TJ, Marmiroli N (2002) Identification and mapping of a putative stress response regulator gene in barley. Plant Mol Biol 50: 143-152.
83. Malysheva-Otto L, Roder MS (2006) Haplotype diversity in the endosperm specific β-amylase gene βmy 1 of cultivated barley (Hordeum vulgare L.). Mol Breed 18: 143-156.
84. Mantel N (1967) The detection of disease clustering and generalized regression approach. Cancer Res 27: 209-220.
85. Medina-Escobar N, Gardenas J, Munoz-Blanco J, Caballero JL (1998) Cloning and molecular characterization of a strawberry fruit ripening-related cDNA corresponding a mRNA for a low-molecular-weight heat-shock protein. Plant Mol Biol 36: 33-42.
86. Milella L, Saluzzi D, Lapelosa M, Bertino G, Spada P, Greco I, Martelli G (2006) Relationships between an Italian strawberry ecotype and its ancestor using RAPD markers. Genet Resour Crop Evol 53: 1715-1720.
87. Mishra RK, Sen-Mandi S (2004) Molecular profiling and development of DNA marker associated with drought tolerance in tea clones growing in Darjeeling. Curr Sci 87: 60-66.
88. Mittler R, Vanderauwera S, Gollery M, van Breusegem F (2004) Reactive oxygen gene network of plants. Trends Plant Sci 9: 490-498.
89. Muthurajan R, Shobbar ZS, Jagadish SVK, Bruskiewich R, Ismail A, Leung H, Bennett J (2010) Physiological and proteomic responses of rice peduncles to drought stress. Mol Biotechnol. doi: 10. 1007/s12033-010-9358-2.
90. Nakashima K, Yamaguchi-Shinozaki K (2005) Molecular studies on stress-responsive gene expression in Arabidopsis and improvement of stress tolerance in crop plants by regulon biotechnology. JARQ 39: 221-225.
91. Nakashima K, Yamaguchi-Shinozaki K (2006) Regulons involved in osmotic stress-responsive and cold stress-responsive gene expression in plants. Physiol Plant 126: 62-71.
92. Ndong C, Ouellet F, Houde M, Sarhan F (1997) Gene expression during cold acclimation in strawberry. Plant Cell Physiol 38: 863-870.
93. Oberschall A, Deak M, Török K, Saa L, Vass I, Kovacs I, Feher A, Dudits D, Horvath GV (2000) A novel aldose/aldehyde reductase protects transgenic plants against lipid peroxidation under chemical and drought stresses. Plant J 24: 437-446.
94. Owens CL, Thomashow MF, Hanckok JF, Iezzoni AF (2002) CBF1 orthologs in sour cherry and strawberry and the heterologous expression of CBF1 in strawberry. J Am Soc Hort Sci 127: 462-710.
95. Park SY, Ryu SH, Jang IC, Kwon SY, Kim JG, Kwak SS (2004) Molecular cloning of a cytosolic ascorbate peroxidase cDNA from cell cultures of sweet potato and its expression in response to stress. Mol Gen Genomics 271: 339-346.
96. Pearce RG (1999) Molecular analysis of acclimation to cold. Plant Growth Regul 29: 47-76.
97. Peleg Z, Fahima T, Abbo S, Krugman T, Nevo E, Yakir D, Saranga Y (2005) Genetic diversity for drought resistance in wild emmer wheat and its ecogeographical associations. Plant, Cell Environ 28: 176-191.
98. Puhakainen T, Hess MW, Makela P, Svensson J, Heino P, Tapio Palva E (2004) Overexpression of multiple dehydrin genes enhances tolerance to freezing stress in Arabidopsis. Plant Mol Biol 54: 743-753.
99. Qian C, Liu S, Yin K (2005) Effects of water stress on the membrane protection system of strawberry. J Southwest Agric Univ. doi: CNKI: SUN: XNND. 0. 2005-04-029.
100. Quick P, Siegl G, Neuhaus E, Feil R, Stitt M (1989) Short-term water stress leads to a stimulation of sucrose synthesis by activating sucrose-phosphate synthase. Planta 177: 535-546.
101. Rampino P, Pataleo S, Gerardi C, Mita G, Perrota C (2006) Drought stress response in wheat: physiological and molecular analysis of tolerant and sensitive genotypes. Plant Cell Environ 29: 2143-2152.
102. Ravel C, Praud S, Murigneux A, Linossier L, Dardevet M, Balfourier F, Dufour PH, Brunel D, Charmet G (2006) Identification of Glu-B1-1 as a candidate gene for the quantity of high-molecular-weight glutenin in bread wheat (Triticum aestivum L.) by means of an association study. Theor Appl Genet 112: 738-743.
103. Razavi F, Pollet B, Steppe K, van Labeke MC (2008) Study of chlorophyll fluorescence as a tool for evaluation of drought stress in strawberry. Photosynthetica 46: 631-633.
104. Remington DL, Thornsberry JM, Matsuoka Y, Wilson LM, Whitt SR, Doebley J, Kresovich S, Goodman MM, Buckler ES IV (2001) Structure of linkage disequilibrium and phenotypic association in the maize genome. PNAS 98: 11479-11484.
105. Rhone B, Raquin AL, Goldringer I (2007) Strong linkage disequilibrium near the selected Yr17 resistance gene in a wheat experimental population. Theor Appl Genet 114: 787-802.
106. Ristic Z, Jenks MA (2002) Leaf cuticle and water loss in maize lines differing in dehydration avoidance. J Plant Physiol 159: 645-651.
107. Rohloff J, Bones AM, Winge P, Kopka J, Erban A, Sparstad T, Wilson RC, Randall SK, Davik J, Alsheikh M (2009) Metabolic, transcriptional and proteomics profiling of cold response in Fragaria vesca. Acta Hort (ISHS) 842: 785-788.
108. Rostoks N, Ramsay L, MacKenize K, Cardle L, Bhat PR, Roose ML, Svensson JT, Stein N, Varshney RK, Marshall DF et al (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. PNAS 103: 18656-18661.
109. Saiful Islam M, Wang MH (2009) Expression of dehydration responsive element-binding protein-3 (DREB3) under different abiotic stresses in tomato. BMB Rep, 611-616.
110. Saleh A, Lumreras V, Pages M (2005) Functional role of DRE-binding transcription factors in abiotic stress. In: Tuberosa R, Phillips RL, Gale M (eds) Proceedings of the international congress "In the wake of the double helix: from the green revolution to the gene revolution". Avenue Media, Bologna, Italy, pp 193-205.
111. Sargent DJ, Hadonou AM, Simpson DW (2003) Development and characterisation of polymorphic microsatellite markers from Fragaria viridis, a wild diploid strawberry. Mol Ecol Notes 3: 550-552.
112. Sargent DJ, Davis TM, Tobutt KR, Wilkinson MJ, Battey NH, Simpson DW (2004) A genetic linkage map of microsatellite, gene-specific and morphological markers in diploid Fragaria. Theor Appl Genet 109: 1385-1391.
113. Sasaki H, Ichimura K, Imada S, Yamaki S (2001) Sucrose synthase and sucrose phosphate synthase, but not acid invertase, are regulated by cold acclimation and deacclimation in cabbage seedlings. J Plant Physiol 158: 847-852.
114. Scariot V, De Keyser E, Handa T, De Riek J (2007) Comparative study of the discriminating capacity and effectiveness of AFLP, STMS and EST markers in assessing genetic relationship among evergreen azaleas. Plant Breed 126: 207-212.
115. Schwab W, G Schaart J, Rosati C (2009) Functional molecular biology research in Fragaria. In: Folta KM, Gardiner SE (eds) Genetic and genomics of Rosaceae. Springer, New York, pp 457-486.
116. Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y, Kamiya A, Nakajima M, Enju A, Sakurai T, Satou M, Akiyama K, Taji T, Yamaguchi-Shinozaki K, Carninci P, Kawai J, Hayashizaki Y, Shinozaki K (2002) Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high salinity stresses using a full-length cDNA microarray. Plant J 31: 279-292.
117. Shao HB, Liang ZS, Shao MA, Sun Q (2005) Dynamic changes of anti-oxidative enzymes of 10 wheat genotypes at soil water deficits. Biointerfaces 42: 187-195.
118. Shinozaki K, Yamaguchi-Shinozaki K (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot 58: 221-227.
119. Shulaev V, Korban SS, Sosinski B, Abbott AG, Aldwinckle HS, Folta KM, Iezzoni A, Main D, Arús P, Dandekar AM, Lewers K, Brown SK, Davis TM, Gardiner SE, Potter D, Veilleux RE (2008) Multiple models for Rosaceae genomics. Plant Physiol 147: 985-1003.
120. Simko I, Costanzo S, Haynes KG, Chris BJ, Jones RW (2004) Linkage disequilibrium mapping of a Verticillium dahliae resistance quantitative trait locus in tetraploid potato Solanum tuberosum through a candidate gene approach. Theor Appl Genet 108: 217-224.
121. Skot L, Humphreys MO, Armstead I, Heywood S, Skot KP, Sanderson R, Thomas ID, Sanderson R, Chorlton KH, Hamilton NRS (2005) An association mapping approach to identify flowering time genes in natural populations of Lotium perenne (L.). Mol Breed 15: 233-245.
122. Smouse PE, Long JC, Sokal RR (1986) Multiple regression and correlation extension of the Mantel test of Matrix correspondence. Syst Zool 35: 627-632.
123. Sorkheh K, Malysheva-Otto LV, Wirthensohn MG, Tarkesh-Esfahani S, Martinez-Gomez P (2008) Linkage disequilibrium, genetic association mapping and gene localization in crop plants. Genet Mol Biol 31: 805-814.
124. Sturm A (1999) Invertases, primary structures, functions, and roles in plant development and sucrose partitioning. Plant Physiol 121: 1-7.
125. Sunkar R, Bartels (2002) Drought- and desiccation-induced modulation of gene expression in plants. Plant Cell Environ 25: 141-151.
126. Suprunova T, Krugman T, Fahima T, Chen G, Shams I, Korol A, Nevo E (2004) Differential expression of dehydrin genes in wild barley, Hordeum spontaneum, associated with resistance to water deficit. Plant Cell Environ 27: 1297-1308.
127. Teulat B, Zoumarou-Wallis N, Rotter B, Ben Salem M, Bahri H, This D (2003) QTL for relative water content in field-grown barley and their stability across Mediterranean environments. Theor Appl Genet 108: 181-188.
128. Thornsberry JM, Goodman MM, Doebley J, Kresovich S, Nielsen D, Buckler ES IV (2001) Dwarf8 polymorphism associated with variation in flowering time. Nat Genet 28: 286-289.
129. Tommasini L, Schnurbusch T, Fossati D, Mascher F, Keller B (2007) Association mapping of Stagonospora nodorum blotch resistance in modern European winter wheat varieties. Theor Appl Genet 115: 697-708.
130. Tuberosa R, Salvi S (2006) Genomics-based approaches to improve drought tolerance of crops. Trends Plant Sci 11: 405-412.
131. Turhan E, Gulen H, Eris A (2008) The activity of antioxidative enzymes in three strawberry cultivars related to salt-stress tolerance. Acta Physiol Plant 30: 201-208.
132. Tyrka M, Dziadczyk P, Hortynski JA (2002) Simplified AFLP procedure as a tool for identification of strawberry cultivars and advanced breeding lines. Euphytica 125: 273-280.
133. VanDerZanden AM, Cameron SJ (1996) Effect of water deficit stress on 11 native Fragariachiloensis clones selected as ornamental groundcovers. Sci Hort 66: 241-253.
134. Verslues PE, Agarwal M, Katiyar-Agarwal S, Zhu J, Zhu JK (2006) Methods and concept in quantifying resistance to drought, salt and freezing, abiotic stressed that affect plant water status. Plant J 45: 523-539.
135. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Fijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 21: 4407-4414.
136. Wang W, Vinocur B, Altman A (2003) Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance. Planta 218: 1-14.
137. Wei W, Dai X, Wang Y, Chuan Y, Gou CB, Chen F (2010) Cloning and expression analysis of 1 L-myo-Inositol-1-phosphate synthase gene from Ricinus communis L. Z Naturforsch 65c: 501-507.
138. Winter H, Huber SC (2000) Regulation of sucrose metabolism in higher plants: localization and regulation of activity of key enzymes. Crit Rev Plant Sci 19: 31-67.
139. Wisniewski ME, Basset CL, Renaut J, Farrell R, Tworkoski T, S. Artlip T (2006) Differential regulation of two dehydrin genes from peach (Prunus persica) by photoperiod, low temperature and water deficit. Tree Physiol 26: 575-584.
140. Xiao H, Siddiqua M, Braybrook S, Nassuth A (2006) Three grape CBF/DREB1 genes respond to low temperature, drought and abscisic acid. Plant Cell Environ 29: 1410-1421.
141. Xing Y, Frei U, Schejbel B, Asp T, Lubberstedt T (2007) Nucleotide diversity and linkage disequilibrium in 11 expressed resistance candidate genes in Lolium perenne. BMC Plant Biol 7: 43.
142. Xiong LM, Lee HJ, Ishitani M, Zhu JK (2002) Regulation of osmotic stress-responsive gene expression by the LOS6/ABA1 locus in Arabidopsis. J Biol Chem 277: 8588-8596.
143. Yamaguchi-Shinozaki K, Shinozaki K (2006) Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu Rev Plant Biol 57: 781-803.
144. Yamaki S (1995) Physiology and metabolism of fruit development-biochemistry of sugar metabolism and compartmentation in fruits. Acta Hort (ISHS) 398: 109-120.
145. Yu J, Buckler ES (2006) Genetic association mapping and genome organization of maize. Curr Opin Biotechnol 17: 155-160.
146. 1-pyrroline-5-carboxylate synthetase and accumulation of proline in Arabidopsis thaliana under osmotic stress. Plant J 7: 751-760.
147. Zhang B, Archbold DD (1993) Solute accumulation in leaves of a Fragariachiloensis and a F. virginiana selection responds to water deficit stress. J Am Soc Hort Sci 118: 280-285.
148. Zhang Y, Shih DS (2007) Isolation of an osmotin-like protein gene from strawberry and analysis of the response of this gene to abiotic stresses. J Plant Physiol 164: 68-77.
149. Zhang JZ, Creelman RA, Zhu JK (2004) From laboratory to field using information from Arabidopsis to engineer salt, cold, and drought tolerance in crops. Plant Physiol 135: 615-621.
150. Zhu JK (2002) Salt and drought stress signal transduction in plants. Annu Rev Plant Biol 53: 247-273.
151. Zhu C, Gore M, S. Buckler E, Yu J (2008) Status and prospects of association mapping in plants. Plant Genome 1: 5-20.