-
1
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel DP, (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
2
-
-
18344369543
-
MicroRNA biogenesis: coordinated cropping and dicing
-
Kim VN, (2005) MicroRNA biogenesis: coordinated cropping and dicing. Nat Rev Mol Cell Biol 6: 376-385.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 376-385
-
-
Kim, V.N.1
-
3
-
-
2142654329
-
MicroRNA-directed cleavage of HOXB8 mRNA
-
Yekta S, Shih IH, Bartel DP, (2004) MicroRNA-directed cleavage of HOXB8 mRNA. Science 304: 594-596.
-
(2004)
Science
, vol.304
, pp. 594-596
-
-
Yekta, S.1
Shih, I.H.2
Bartel, D.P.3
-
4
-
-
33748928159
-
The diverse functions of microRNAs in animal development and disease
-
Kloosterman WP, Plasterk RH, (2006) The diverse functions of microRNAs in animal development and disease. Dev Cell 11: 441-450.
-
(2006)
Dev Cell
, vol.11
, pp. 441-450
-
-
Kloosterman, W.P.1
Plasterk, R.H.2
-
5
-
-
37049005341
-
MicroRNAs in synapse development: tiny molecules to remember
-
Fiore R, Schratt G, (2007) MicroRNAs in synapse development: tiny molecules to remember. Expert Opin Biol Ther 7: 1823-1831.
-
(2007)
Expert Opin Biol Ther
, vol.7
, pp. 1823-1831
-
-
Fiore, R.1
Schratt, G.2
-
6
-
-
37249055188
-
MicroRNAs in vertebrate synapse development
-
Fiore R, Schratt G, (2007) MicroRNAs in vertebrate synapse development. ScientificWorldJournal 7: 167-177.
-
(2007)
ScientificWorldJournal
, vol.7
, pp. 167-177
-
-
Fiore, R.1
Schratt, G.2
-
7
-
-
34948900503
-
Non coding RNA and brain
-
Presutti C, Rosati J, Vincenti S, Nasi S, (2006) Non coding RNA and brain. BMC Neurosci 7 (Suppl 1): S5.
-
(2006)
BMC Neurosci
, vol.7
, Issue.SUPPL. 1
-
-
Presutti, C.1
Rosati, J.2
Vincenti, S.3
Nasi, S.4
-
8
-
-
77951908608
-
Stress induces region specific alterations in microRNAs expression in mice
-
Rinaldi A, Vincenti S, De Vito F, Bozzoni I, Oliverio A, et al. (2010) Stress induces region specific alterations in microRNAs expression in mice. Behav Brain Res 208: 265-269.
-
(2010)
Behav Brain Res
, vol.208
, pp. 265-269
-
-
Rinaldi, A.1
Vincenti, S.2
De Vito, F.3
Bozzoni, I.4
Oliverio, A.5
-
9
-
-
77954510708
-
Striatal microRNA controls cocaine intake through CREB signalling
-
Hollander JA, Im HI, Amelio AL, Kocerha J, Bali P, et al. (2010) Striatal microRNA controls cocaine intake through CREB signalling. Nature 466: 197-202.
-
(2010)
Nature
, vol.466
, pp. 197-202
-
-
Hollander, J.A.1
Im, H.I.2
Amelio, A.L.3
Kocerha, J.4
Bali, P.5
-
10
-
-
33847203593
-
Micro-RNA speciation in fetal, adult and Alzheimer's disease hippocampus
-
Lukiw WJ, (2007) Micro-RNA speciation in fetal, adult and Alzheimer's disease hippocampus. Neuroreport 18: 297-300.
-
(2007)
Neuroreport
, vol.18
, pp. 297-300
-
-
Lukiw, W.J.1
-
11
-
-
38749095507
-
The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1
-
Wang WX, Rajeev BW, Stromberg AJ, Ren N, Tang G, et al. (2008) The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1. J Neurosci 28: 1213-1223.
-
(2008)
J Neurosci
, vol.28
, pp. 1213-1223
-
-
Wang, W.X.1
Rajeev, B.W.2
Stromberg, A.J.3
Ren, N.4
Tang, G.5
-
12
-
-
34548537573
-
A MicroRNA feedback circuit in midbrain dopamine neurons
-
Kim J, Inoue K, Ishii J, Vanti WB, Voronov SV, et al. (2007) A MicroRNA feedback circuit in midbrain dopamine neurons. Science 317: 1220-1224.
-
(2007)
Science
, vol.317
, pp. 1220-1224
-
-
Kim, J.1
Inoue, K.2
Ishii, J.3
Vanti, W.B.4
Voronov, S.V.5
-
13
-
-
34249736846
-
microRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder
-
Perkins DO, Jeffries CD, Jarskog LF, Thomson JM, Woods K, et al. (2007) microRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder. Genome Biol 8: R27.
-
(2007)
Genome Biol
, vol.8
-
-
Perkins, D.O.1
Jeffries, C.D.2
Jarskog, L.F.3
Thomson, J.M.4
Woods, K.5
-
14
-
-
62849121357
-
A common polymorphism in serotonin receptor 1B mRNA moderates regulation by miR-96 and associates with aggressive human behaviors
-
Jensen KP, Covault J, Conner TS, Tennen H, Kranzler HR, et al. (2009) A common polymorphism in serotonin receptor 1B mRNA moderates regulation by miR-96 and associates with aggressive human behaviors. Mol Psychiatry 14: 381-389.
-
(2009)
Mol Psychiatry
, vol.14
, pp. 381-389
-
-
Jensen, K.P.1
Covault, J.2
Conner, T.S.3
Tennen, H.4
Kranzler, H.R.5
-
15
-
-
77957734498
-
Genetic variants and abnormal processing of pre-miR-182, a circadian clock modulator, in major depression patients with late insomnia
-
Saus E, Soria V, Escaramis G, Vivarelli F, Crespo JM, et al. (2010) Genetic variants and abnormal processing of pre-miR-182, a circadian clock modulator, in major depression patients with late insomnia. Hum Mol Genet 19: 4017-4025.
-
(2010)
Hum Mol Genet
, vol.19
, pp. 4017-4025
-
-
Saus, E.1
Soria, V.2
Escaramis, G.3
Vivarelli, F.4
Crespo, J.M.5
-
16
-
-
79952017623
-
Human microRNAs miR-22, miR-138-2, miR-148a, and miR-488 Are Associated with Panic Disorder and Regulate Several Anxiety Candidate Genes and Related Pathways
-
Muinos-Gimeno M, Espinosa-Parrilla Y, Guidi M, Kagerbauer B, Sipila T, et al. (2010) Human microRNAs miR-22, miR-138-2, miR-148a, and miR-488 Are Associated with Panic Disorder and Regulate Several Anxiety Candidate Genes and Related Pathways. Biol Psychiatry 69: 526-533.
-
(2010)
Biol Psychiatry
, vol.69
, pp. 526-533
-
-
Muinos-Gimeno, M.1
Espinosa-Parrilla, Y.2
Guidi, M.3
Kagerbauer, B.4
Sipila, T.5
-
17
-
-
67649672149
-
Allele variants in functional MicroRNA target sites of the neurotrophin-3 receptor gene (NTRK3) as susceptibility factors for anxiety disorders
-
Muinos-Gimeno M, Guidi M, Kagerbauer B, Martin-Santos R, Navines R, et al. (2009) Allele variants in functional MicroRNA target sites of the neurotrophin-3 receptor gene (NTRK3) as susceptibility factors for anxiety disorders. Hum Mutat 30: 1062-1071.
-
(2009)
Hum Mutat
, vol.30
, pp. 1062-1071
-
-
Muinos-Gimeno, M.1
Guidi, M.2
Kagerbauer, B.3
Martin-Santos, R.4
Navines, R.5
-
18
-
-
33748928738
-
Differences in vertebrate microRNA expression
-
Ason B, Darnell DK, Wittbrodt B, Berezikov E, Kloosterman WP, et al. (2006) Differences in vertebrate microRNA expression. Proc Natl Acad Sci U S A 103: 14385-14389.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 14385-14389
-
-
Ason, B.1
Darnell, D.K.2
Wittbrodt, B.3
Berezikov, E.4
Kloosterman, W.P.5
-
19
-
-
0346727524
-
MicroRNAs modulate hematopoietic lineage differentiation
-
Chen CZ, Li L, Lodish HF, Bartel DP, (2004) MicroRNAs modulate hematopoietic lineage differentiation. Science 303: 83-86.
-
(2004)
Science
, vol.303
, pp. 83-86
-
-
Chen, C.Z.1
Li, L.2
Lodish, H.F.3
Bartel, D.P.4
-
20
-
-
38349114827
-
MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system
-
Kapsimali M, Kloosterman WP, de Bruijn E, Rosa F, Plasterk RH, et al. (2007) MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system. Genome Biol 8: R173.
-
(2007)
Genome Biol
, vol.8
-
-
Kapsimali, M.1
Kloosterman, W.P.2
de Bruijn, E.3
Rosa, F.4
Plasterk, R.H.5
-
21
-
-
40449124713
-
MicroRNA expression in the adult mouse central nervous system
-
Bak M, Silahtaroglu A, Moller M, Christensen M, Rath MF, et al. (2008) MicroRNA expression in the adult mouse central nervous system. Rna 14: 432-444.
-
(2008)
Rna
, vol.14
, pp. 432-444
-
-
Bak, M.1
Silahtaroglu, A.2
Moller, M.3
Christensen, M.4
Rath, M.F.5
-
22
-
-
70350217340
-
MicroRNAs show mutually exclusive expression patterns in the brain of adult male rats
-
Olsen L, Klausen M, Helboe L, Nielsen FC, Werge T, (2009) MicroRNAs show mutually exclusive expression patterns in the brain of adult male rats. PLoS One 4: e7225.
-
(2009)
PLoS One
, vol.4
-
-
Olsen, L.1
Klausen, M.2
Helboe, L.3
Nielsen, F.C.4
Werge, T.5
-
23
-
-
22544477508
-
Adult mouse brain gene expression patterns bear an embryologic imprint
-
Zapala MA, Hovatta I, Ellison JA, Wodicka L, Del Rio JA, et al. (2005) Adult mouse brain gene expression patterns bear an embryologic imprint. Proc Natl Acad Sci U S A 102: 10357-10362.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 10357-10362
-
-
Zapala, M.A.1
Hovatta, I.2
Ellison, J.A.3
Wodicka, L.4
Del Rio, J.A.5
-
24
-
-
33846252240
-
Genome-wide atlas of gene expression in the adult mouse brain
-
Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, et al. (2007) Genome-wide atlas of gene expression in the adult mouse brain. Nature 445: 168-176.
-
(2007)
Nature
, vol.445
, pp. 168-176
-
-
Lein, E.S.1
Hawrylycz, M.J.2
Ao, N.3
Ayres, M.4
Bensinger, A.5
-
25
-
-
34447505156
-
DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies
-
Hovatta I, Zapala MA, Broide RS, Schadt EE, Libiger O, et al. (2007) DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies. Genome Biol 8: R25.
-
(2007)
Genome Biol
, vol.8
-
-
Hovatta, I.1
Zapala, M.A.2
Broide, R.S.3
Schadt, E.E.4
Libiger, O.5
-
26
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
-
Filipowicz W, Bhattacharyya SN, Sonenberg N, (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9: 102-114.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
27
-
-
65349094759
-
Computational and analytical framework for small RNA profiling by high-throughput sequencing
-
Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, et al. (2009) Computational and analytical framework for small RNA profiling by high-throughput sequencing. Rna 15: 992-1002.
-
(2009)
Rna
, vol.15
, pp. 992-1002
-
-
Fahlgren, N.1
Sullivan, C.M.2
Kasschau, K.D.3
Chapman, E.J.4
Cumbie, J.S.5
-
28
-
-
77951190661
-
Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression
-
Git A, Dvinge H, Salmon-Divon M, Osborne M, Kutter C, et al. (2010) Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression. Rna 16: 991-1006.
-
(2010)
Rna
, vol.16
, pp. 991-1006
-
-
Git, A.1
Dvinge, H.2
Salmon-Divon, M.3
Osborne, M.4
Kutter, C.5
-
29
-
-
0002294347
-
A simple sequentially rejective multiple test procedure
-
Holm S, (1979) A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics 6: 65-70.
-
(1979)
Scandinavian Journal of Statistics
, vol.6
, pp. 65-70
-
-
Holm, S.1
-
30
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
Benjamini Y, Hochberg Y, (1995) The control of the false discovery rate in multiple testing under dependency. Annals of Statistics 29: 1165-1188.
-
(1995)
Annals of Statistics
, vol.29
, pp. 1165-1188
-
-
Benjamini, Y.1
Hochberg, Y.2
-
31
-
-
45749124784
-
A computational screen for mouse signaling pathways targeted by microRNA clusters
-
Xu J, Wong C, (2008) A computational screen for mouse signaling pathways targeted by microRNA clusters. Rna 14: 1276-1283.
-
(2008)
Rna
, vol.14
, pp. 1276-1283
-
-
Xu, J.1
Wong, C.2
-
32
-
-
44849106063
-
A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
-
Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, et al. (2008) A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Res 18: 957-964.
-
(2008)
Genome Res
, vol.18
, pp. 957-964
-
-
Glazov, E.A.1
Cottee, P.A.2
Barris, W.C.3
Moore, R.J.4
Dalrymple, B.P.5
-
33
-
-
55549129277
-
In-depth characterization of the microRNA transcriptome in a leukemia progression model
-
Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, et al. (2008) In-depth characterization of the microRNA transcriptome in a leukemia progression model. Genome Res 18: 1787-1797.
-
(2008)
Genome Res
, vol.18
, pp. 1787-1797
-
-
Kuchenbauer, F.1
Morin, R.D.2
Argiropoulos, B.3
Petriv, O.I.4
Griffith, M.5
-
34
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res 18: 610-621.
-
(2008)
Genome Res
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
-
35
-
-
77954045451
-
Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs
-
Pradervand S, Weber J, Lemoine F, Consales F, Paillusson A, et al. (2010) Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs. Biotechniques 48: 219-222.
-
(2010)
Biotechniques
, vol.48
, pp. 219-222
-
-
Pradervand, S.1
Weber, J.2
Lemoine, F.3
Consales, F.4
Paillusson, A.5
-
36
-
-
18744367544
-
Clustering and conservation patterns of human microRNAs
-
Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, et al. (2005) Clustering and conservation patterns of human microRNAs. Nucleic Acids Res 33: 2697-2706.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2697-2706
-
-
Altuvia, Y.1
Landgraf, P.2
Lithwick, G.3
Elefant, N.4
Pfeffer, S.5
-
37
-
-
33846053464
-
miRGen: a database for the study of animal microRNA genomic organization and function
-
Megraw M, Sethupathy P, Corda B, Hatzigeorgiou AG, (2007) miRGen: a database for the study of animal microRNA genomic organization and function. Nucleic Acids Res 35: D149-155.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Megraw, M.1
Sethupathy, P.2
Corda, B.3
Hatzigeorgiou, A.G.4
-
38
-
-
13944260434
-
Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
-
Baskerville S, Bartel DP, (2005) Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA 11: 241-247.
-
(2005)
RNA
, vol.11
, pp. 241-247
-
-
Baskerville, S.1
Bartel, D.P.2
-
39
-
-
33748302836
-
Augmentation of tumor angiogenesis by a Myc-activated microRNA cluster
-
Dews M, Homayouni A, Yu D, Murphy D, Sevignani C, et al. (2006) Augmentation of tumor angiogenesis by a Myc-activated microRNA cluster. Nat Genet 38: 1060-1065.
-
(2006)
Nat Genet
, vol.38
, pp. 1060-1065
-
-
Dews, M.1
Homayouni, A.2
Yu, D.3
Murphy, D.4
Sevignani, C.5
-
40
-
-
77953268102
-
Roles for dysfunctional sphingolipid metabolism in Alzheimer's disease neuropathogenesis
-
878-886
-
Haughey NJ, Bandaru VV, Bae M, Mattson MP, (2010) Roles for dysfunctional sphingolipid metabolism in Alzheimer's disease neuropathogenesis. Biochim Biophys Acta 1801 878-886: 878-886.
-
(2010)
Biochim Biophys Acta
, vol.1801
, pp. 878-886
-
-
Haughey, N.J.1
Bandaru, V.V.2
Bae, M.3
Mattson, M.P.4
-
41
-
-
0034488193
-
Pivotal role for acidic sphingomyelinase in cerebral ischemia-induced ceramide and cytokine production, and neuronal apoptosis
-
Yu ZF, Nikolova-Karakashian M, Zhou D, Cheng G, Schuchman EH, et al. (2000) Pivotal role for acidic sphingomyelinase in cerebral ischemia-induced ceramide and cytokine production, and neuronal apoptosis. J Mol Neurosci 15: 85-97.
-
(2000)
J Mol Neurosci
, vol.15
, pp. 85-97
-
-
Yu, Z.F.1
Nikolova-Karakashian, M.2
Zhou, D.3
Cheng, G.4
Schuchman, E.H.5
-
42
-
-
0030066567
-
Ceramide induces apoptosis in cultured mesencephalic neurons
-
Brugg B, Michel PP, Agid Y, Ruberg M, (1996) Ceramide induces apoptosis in cultured mesencephalic neurons. J Neurochem 66: 733-739.
-
(1996)
J Neurochem
, vol.66
, pp. 733-739
-
-
Brugg, B.1
Michel, P.P.2
Agid, Y.3
Ruberg, M.4
-
43
-
-
31544472673
-
Association of the calcyon gene (DRD1IP) with attention deficit/hyperactivity disorder
-
Laurin N, Misener VL, Crosbie J, Ickowicz A, Pathare T, et al. (2005) Association of the calcyon gene (DRD1IP) with attention deficit/hyperactivity disorder. Mol Psychiatry 10: 1117-1125.
-
(2005)
Mol Psychiatry
, vol.10
, pp. 1117-1125
-
-
Laurin, N.1
Misener, V.L.2
Crosbie, J.3
Ickowicz, A.4
Pathare, T.5
-
44
-
-
41149168533
-
Up-regulation of calcyon results in locomotor hyperactivity and reduced anxiety in mice
-
Trantham-Davidson H, Vazdarjanova A, Dai R, Terry A, Bergson C, (2008) Up-regulation of calcyon results in locomotor hyperactivity and reduced anxiety in mice. Behav Brain Res 189: 244-249.
-
(2008)
Behav Brain Res
, vol.189
, pp. 244-249
-
-
Trantham-Davidson, H.1
Vazdarjanova, A.2
Dai, R.3
Terry, A.4
Bergson, C.5
-
45
-
-
33746559149
-
Dopamine receptor signaling molecules are altered in elderly schizophrenic cortex
-
Baracskay KL, Haroutunian V, Meador-Woodruff JH, (2006) Dopamine receptor signaling molecules are altered in elderly schizophrenic cortex. Synapse 60: 271-279.
-
(2006)
Synapse
, vol.60
, pp. 271-279
-
-
Baracskay, K.L.1
Haroutunian, V.2
Meador-Woodruff, J.H.3
-
46
-
-
26444566804
-
Dopaminergic abnormalities in select thalamic nuclei in schizophrenia: involvement of the intracellular signal integrating proteins calcyon and spinophilin
-
Clinton SM, Ibrahim HM, Frey KA, Davis KL, Haroutunian V, et al. (2005) Dopaminergic abnormalities in select thalamic nuclei in schizophrenia: involvement of the intracellular signal integrating proteins calcyon and spinophilin. Am J Psychiatry 162: 1859-1871.
-
(2005)
Am J Psychiatry
, vol.162
, pp. 1859-1871
-
-
Clinton, S.M.1
Ibrahim, H.M.2
Frey, K.A.3
Davis, K.L.4
Haroutunian, V.5
-
47
-
-
28444445972
-
Glyoxalase 1 and glutathione reductase 1 regulate anxiety in mice
-
Hovatta I, Tennant RS, Helton R, Marr RA, Singer O, et al. (2005) Glyoxalase 1 and glutathione reductase 1 regulate anxiety in mice. Nature 438: 662-666.
-
(2005)
Nature
, vol.438
, pp. 662-666
-
-
Hovatta, I.1
Tennant, R.S.2
Helton, R.3
Marr, R.A.4
Singer, O.5
-
49
-
-
33644750115
-
miRBase: microRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ, (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 34: D140-144.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
51
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S, (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39: D152-157.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
52
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
53
-
-
75249087100
-
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, Smyth GK, (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
54
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
-
55
-
-
1342288026
-
affy--analysis of Affymetrix GeneChip data at the probe level
-
Gautier L, Cope L, Bolstad BM, Irizarry RA, (2004) affy--analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20: 307-315.
-
(2004)
Bioinformatics
, vol.20
, pp. 307-315
-
-
Gautier, L.1
Cope, L.2
Bolstad, B.M.3
Irizarry, R.A.4
-
56
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
-
57
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth GK, (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol: 3.
-
(2004)
Stat Appl Genet Mol Biol:
, vol.3
-
-
Smyth, G.K.1
-
58
-
-
33748489754
-
Similarities of ordered gene lists
-
Yang X, Bentink S, Scheid S, Spang R, (2006) Similarities of ordered gene lists. J Bioinform Comput Biol 4: 693-708.
-
(2006)
J Bioinform Comput Biol
, vol.4
, pp. 693-708
-
-
Yang, X.1
Bentink, S.2
Scheid, S.3
Spang, R.4
-
59
-
-
77954504259
-
Comparison and integration of target prediction algorithms for microRNA studies
-
doi:
-
Zhang Y, Verbeek FJ, (2010) Comparison and integration of target prediction algorithms for microRNA studies. J Integr Bioinform 7 doi:10.2390/biecoll-jib-2010-2127.
-
(2010)
J Integr Bioinform
, vol.7
-
-
Zhang, Y.1
Verbeek, F.J.2
-
60
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis BP, Burge CB, Bartel DP, (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
61
-
-
14044251458
-
Human MicroRNA targets
-
John B, Enright AJ, Aravin A, Tuschl T, Sander C, et al. (2004) Human MicroRNA targets. PLoS Biol 2: e363.
-
(2004)
PLoS Biol
, vol.2
-
-
John, B.1
Enright, A.J.2
Aravin, A.3
Tuschl, T.4
Sander, C.5
-
62
-
-
33748587841
-
A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes
-
Miranda KC, Huynh T, Tay Y, Ang YS, Tam WL, et al. (2006) A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell 126: 1203-1217.
-
(2006)
Cell
, vol.126
, pp. 1203-1217
-
-
Miranda, K.C.1
Huynh, T.2
Tay, Y.3
Ang, Y.S.4
Tam, W.L.5
-
63
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R, (2004) Fast and effective prediction of microRNA/target duplexes. Rna 10: 1507-1517.
-
(2004)
Rna
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
Giegerich, R.4
-
64
-
-
44149083586
-
miRDB: a microRNA target prediction and functional annotation database with a wiki interface
-
Wang X, (2008) miRDB: a microRNA target prediction and functional annotation database with a wiki interface. Rna 14: 1012-1017.
-
(2008)
Rna
, vol.14
, pp. 1012-1017
-
-
Wang, X.1
|