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Volumn 6, Issue 6, 2011, Pages

MicroRNA expression profiling reveals MiRNA families regulating specific biological pathways in mouse frontal cortex and hippocampus

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MESSENGER RNA;

EID: 79959463758     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0021495     Document Type: Article
Times cited : (70)

References (64)
  • 1
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel DP, (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 2
    • 18344369543 scopus 로고    scopus 로고
    • MicroRNA biogenesis: coordinated cropping and dicing
    • Kim VN, (2005) MicroRNA biogenesis: coordinated cropping and dicing. Nat Rev Mol Cell Biol 6: 376-385.
    • (2005) Nat Rev Mol Cell Biol , vol.6 , pp. 376-385
    • Kim, V.N.1
  • 3
    • 2142654329 scopus 로고    scopus 로고
    • MicroRNA-directed cleavage of HOXB8 mRNA
    • Yekta S, Shih IH, Bartel DP, (2004) MicroRNA-directed cleavage of HOXB8 mRNA. Science 304: 594-596.
    • (2004) Science , vol.304 , pp. 594-596
    • Yekta, S.1    Shih, I.H.2    Bartel, D.P.3
  • 4
    • 33748928159 scopus 로고    scopus 로고
    • The diverse functions of microRNAs in animal development and disease
    • Kloosterman WP, Plasterk RH, (2006) The diverse functions of microRNAs in animal development and disease. Dev Cell 11: 441-450.
    • (2006) Dev Cell , vol.11 , pp. 441-450
    • Kloosterman, W.P.1    Plasterk, R.H.2
  • 5
    • 37049005341 scopus 로고    scopus 로고
    • MicroRNAs in synapse development: tiny molecules to remember
    • Fiore R, Schratt G, (2007) MicroRNAs in synapse development: tiny molecules to remember. Expert Opin Biol Ther 7: 1823-1831.
    • (2007) Expert Opin Biol Ther , vol.7 , pp. 1823-1831
    • Fiore, R.1    Schratt, G.2
  • 6
    • 37249055188 scopus 로고    scopus 로고
    • MicroRNAs in vertebrate synapse development
    • Fiore R, Schratt G, (2007) MicroRNAs in vertebrate synapse development. ScientificWorldJournal 7: 167-177.
    • (2007) ScientificWorldJournal , vol.7 , pp. 167-177
    • Fiore, R.1    Schratt, G.2
  • 8
    • 77951908608 scopus 로고    scopus 로고
    • Stress induces region specific alterations in microRNAs expression in mice
    • Rinaldi A, Vincenti S, De Vito F, Bozzoni I, Oliverio A, et al. (2010) Stress induces region specific alterations in microRNAs expression in mice. Behav Brain Res 208: 265-269.
    • (2010) Behav Brain Res , vol.208 , pp. 265-269
    • Rinaldi, A.1    Vincenti, S.2    De Vito, F.3    Bozzoni, I.4    Oliverio, A.5
  • 9
    • 77954510708 scopus 로고    scopus 로고
    • Striatal microRNA controls cocaine intake through CREB signalling
    • Hollander JA, Im HI, Amelio AL, Kocerha J, Bali P, et al. (2010) Striatal microRNA controls cocaine intake through CREB signalling. Nature 466: 197-202.
    • (2010) Nature , vol.466 , pp. 197-202
    • Hollander, J.A.1    Im, H.I.2    Amelio, A.L.3    Kocerha, J.4    Bali, P.5
  • 10
    • 33847203593 scopus 로고    scopus 로고
    • Micro-RNA speciation in fetal, adult and Alzheimer's disease hippocampus
    • Lukiw WJ, (2007) Micro-RNA speciation in fetal, adult and Alzheimer's disease hippocampus. Neuroreport 18: 297-300.
    • (2007) Neuroreport , vol.18 , pp. 297-300
    • Lukiw, W.J.1
  • 11
    • 38749095507 scopus 로고    scopus 로고
    • The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1
    • Wang WX, Rajeev BW, Stromberg AJ, Ren N, Tang G, et al. (2008) The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1. J Neurosci 28: 1213-1223.
    • (2008) J Neurosci , vol.28 , pp. 1213-1223
    • Wang, W.X.1    Rajeev, B.W.2    Stromberg, A.J.3    Ren, N.4    Tang, G.5
  • 12
    • 34548537573 scopus 로고    scopus 로고
    • A MicroRNA feedback circuit in midbrain dopamine neurons
    • Kim J, Inoue K, Ishii J, Vanti WB, Voronov SV, et al. (2007) A MicroRNA feedback circuit in midbrain dopamine neurons. Science 317: 1220-1224.
    • (2007) Science , vol.317 , pp. 1220-1224
    • Kim, J.1    Inoue, K.2    Ishii, J.3    Vanti, W.B.4    Voronov, S.V.5
  • 13
    • 34249736846 scopus 로고    scopus 로고
    • microRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder
    • Perkins DO, Jeffries CD, Jarskog LF, Thomson JM, Woods K, et al. (2007) microRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder. Genome Biol 8: R27.
    • (2007) Genome Biol , vol.8
    • Perkins, D.O.1    Jeffries, C.D.2    Jarskog, L.F.3    Thomson, J.M.4    Woods, K.5
  • 14
    • 62849121357 scopus 로고    scopus 로고
    • A common polymorphism in serotonin receptor 1B mRNA moderates regulation by miR-96 and associates with aggressive human behaviors
    • Jensen KP, Covault J, Conner TS, Tennen H, Kranzler HR, et al. (2009) A common polymorphism in serotonin receptor 1B mRNA moderates regulation by miR-96 and associates with aggressive human behaviors. Mol Psychiatry 14: 381-389.
    • (2009) Mol Psychiatry , vol.14 , pp. 381-389
    • Jensen, K.P.1    Covault, J.2    Conner, T.S.3    Tennen, H.4    Kranzler, H.R.5
  • 15
    • 77957734498 scopus 로고    scopus 로고
    • Genetic variants and abnormal processing of pre-miR-182, a circadian clock modulator, in major depression patients with late insomnia
    • Saus E, Soria V, Escaramis G, Vivarelli F, Crespo JM, et al. (2010) Genetic variants and abnormal processing of pre-miR-182, a circadian clock modulator, in major depression patients with late insomnia. Hum Mol Genet 19: 4017-4025.
    • (2010) Hum Mol Genet , vol.19 , pp. 4017-4025
    • Saus, E.1    Soria, V.2    Escaramis, G.3    Vivarelli, F.4    Crespo, J.M.5
  • 16
    • 79952017623 scopus 로고    scopus 로고
    • Human microRNAs miR-22, miR-138-2, miR-148a, and miR-488 Are Associated with Panic Disorder and Regulate Several Anxiety Candidate Genes and Related Pathways
    • Muinos-Gimeno M, Espinosa-Parrilla Y, Guidi M, Kagerbauer B, Sipila T, et al. (2010) Human microRNAs miR-22, miR-138-2, miR-148a, and miR-488 Are Associated with Panic Disorder and Regulate Several Anxiety Candidate Genes and Related Pathways. Biol Psychiatry 69: 526-533.
    • (2010) Biol Psychiatry , vol.69 , pp. 526-533
    • Muinos-Gimeno, M.1    Espinosa-Parrilla, Y.2    Guidi, M.3    Kagerbauer, B.4    Sipila, T.5
  • 17
    • 67649672149 scopus 로고    scopus 로고
    • Allele variants in functional MicroRNA target sites of the neurotrophin-3 receptor gene (NTRK3) as susceptibility factors for anxiety disorders
    • Muinos-Gimeno M, Guidi M, Kagerbauer B, Martin-Santos R, Navines R, et al. (2009) Allele variants in functional MicroRNA target sites of the neurotrophin-3 receptor gene (NTRK3) as susceptibility factors for anxiety disorders. Hum Mutat 30: 1062-1071.
    • (2009) Hum Mutat , vol.30 , pp. 1062-1071
    • Muinos-Gimeno, M.1    Guidi, M.2    Kagerbauer, B.3    Martin-Santos, R.4    Navines, R.5
  • 19
    • 0346727524 scopus 로고    scopus 로고
    • MicroRNAs modulate hematopoietic lineage differentiation
    • Chen CZ, Li L, Lodish HF, Bartel DP, (2004) MicroRNAs modulate hematopoietic lineage differentiation. Science 303: 83-86.
    • (2004) Science , vol.303 , pp. 83-86
    • Chen, C.Z.1    Li, L.2    Lodish, H.F.3    Bartel, D.P.4
  • 20
    • 38349114827 scopus 로고    scopus 로고
    • MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system
    • Kapsimali M, Kloosterman WP, de Bruijn E, Rosa F, Plasterk RH, et al. (2007) MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system. Genome Biol 8: R173.
    • (2007) Genome Biol , vol.8
    • Kapsimali, M.1    Kloosterman, W.P.2    de Bruijn, E.3    Rosa, F.4    Plasterk, R.H.5
  • 21
    • 40449124713 scopus 로고    scopus 로고
    • MicroRNA expression in the adult mouse central nervous system
    • Bak M, Silahtaroglu A, Moller M, Christensen M, Rath MF, et al. (2008) MicroRNA expression in the adult mouse central nervous system. Rna 14: 432-444.
    • (2008) Rna , vol.14 , pp. 432-444
    • Bak, M.1    Silahtaroglu, A.2    Moller, M.3    Christensen, M.4    Rath, M.F.5
  • 22
    • 70350217340 scopus 로고    scopus 로고
    • MicroRNAs show mutually exclusive expression patterns in the brain of adult male rats
    • Olsen L, Klausen M, Helboe L, Nielsen FC, Werge T, (2009) MicroRNAs show mutually exclusive expression patterns in the brain of adult male rats. PLoS One 4: e7225.
    • (2009) PLoS One , vol.4
    • Olsen, L.1    Klausen, M.2    Helboe, L.3    Nielsen, F.C.4    Werge, T.5
  • 24
    • 33846252240 scopus 로고    scopus 로고
    • Genome-wide atlas of gene expression in the adult mouse brain
    • Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, et al. (2007) Genome-wide atlas of gene expression in the adult mouse brain. Nature 445: 168-176.
    • (2007) Nature , vol.445 , pp. 168-176
    • Lein, E.S.1    Hawrylycz, M.J.2    Ao, N.3    Ayres, M.4    Bensinger, A.5
  • 25
    • 34447505156 scopus 로고    scopus 로고
    • DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies
    • Hovatta I, Zapala MA, Broide RS, Schadt EE, Libiger O, et al. (2007) DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies. Genome Biol 8: R25.
    • (2007) Genome Biol , vol.8
    • Hovatta, I.1    Zapala, M.A.2    Broide, R.S.3    Schadt, E.E.4    Libiger, O.5
  • 26
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
    • Filipowicz W, Bhattacharyya SN, Sonenberg N, (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9: 102-114.
    • (2008) Nat Rev Genet , vol.9 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 27
    • 65349094759 scopus 로고    scopus 로고
    • Computational and analytical framework for small RNA profiling by high-throughput sequencing
    • Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, et al. (2009) Computational and analytical framework for small RNA profiling by high-throughput sequencing. Rna 15: 992-1002.
    • (2009) Rna , vol.15 , pp. 992-1002
    • Fahlgren, N.1    Sullivan, C.M.2    Kasschau, K.D.3    Chapman, E.J.4    Cumbie, J.S.5
  • 28
    • 77951190661 scopus 로고    scopus 로고
    • Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression
    • Git A, Dvinge H, Salmon-Divon M, Osborne M, Kutter C, et al. (2010) Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression. Rna 16: 991-1006.
    • (2010) Rna , vol.16 , pp. 991-1006
    • Git, A.1    Dvinge, H.2    Salmon-Divon, M.3    Osborne, M.4    Kutter, C.5
  • 29
    • 0002294347 scopus 로고
    • A simple sequentially rejective multiple test procedure
    • Holm S, (1979) A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics 6: 65-70.
    • (1979) Scandinavian Journal of Statistics , vol.6 , pp. 65-70
    • Holm, S.1
  • 30
    • 0035733108 scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini Y, Hochberg Y, (1995) The control of the false discovery rate in multiple testing under dependency. Annals of Statistics 29: 1165-1188.
    • (1995) Annals of Statistics , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Hochberg, Y.2
  • 31
    • 45749124784 scopus 로고    scopus 로고
    • A computational screen for mouse signaling pathways targeted by microRNA clusters
    • Xu J, Wong C, (2008) A computational screen for mouse signaling pathways targeted by microRNA clusters. Rna 14: 1276-1283.
    • (2008) Rna , vol.14 , pp. 1276-1283
    • Xu, J.1    Wong, C.2
  • 32
    • 44849106063 scopus 로고    scopus 로고
    • A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    • Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, et al. (2008) A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Res 18: 957-964.
    • (2008) Genome Res , vol.18 , pp. 957-964
    • Glazov, E.A.1    Cottee, P.A.2    Barris, W.C.3    Moore, R.J.4    Dalrymple, B.P.5
  • 33
    • 55549129277 scopus 로고    scopus 로고
    • In-depth characterization of the microRNA transcriptome in a leukemia progression model
    • Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, et al. (2008) In-depth characterization of the microRNA transcriptome in a leukemia progression model. Genome Res 18: 1787-1797.
    • (2008) Genome Res , vol.18 , pp. 1787-1797
    • Kuchenbauer, F.1    Morin, R.D.2    Argiropoulos, B.3    Petriv, O.I.4    Griffith, M.5
  • 34
    • 41649106136 scopus 로고    scopus 로고
    • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    • Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res 18: 610-621.
    • (2008) Genome Res , vol.18 , pp. 610-621
    • Morin, R.D.1    O'Connor, M.D.2    Griffith, M.3    Kuchenbauer, F.4    Delaney, A.5
  • 35
    • 77954045451 scopus 로고    scopus 로고
    • Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs
    • Pradervand S, Weber J, Lemoine F, Consales F, Paillusson A, et al. (2010) Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs. Biotechniques 48: 219-222.
    • (2010) Biotechniques , vol.48 , pp. 219-222
    • Pradervand, S.1    Weber, J.2    Lemoine, F.3    Consales, F.4    Paillusson, A.5
  • 37
    • 33846053464 scopus 로고    scopus 로고
    • miRGen: a database for the study of animal microRNA genomic organization and function
    • Megraw M, Sethupathy P, Corda B, Hatzigeorgiou AG, (2007) miRGen: a database for the study of animal microRNA genomic organization and function. Nucleic Acids Res 35: D149-155.
    • (2007) Nucleic Acids Res , vol.35
    • Megraw, M.1    Sethupathy, P.2    Corda, B.3    Hatzigeorgiou, A.G.4
  • 38
    • 13944260434 scopus 로고    scopus 로고
    • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
    • Baskerville S, Bartel DP, (2005) Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA 11: 241-247.
    • (2005) RNA , vol.11 , pp. 241-247
    • Baskerville, S.1    Bartel, D.P.2
  • 39
    • 33748302836 scopus 로고    scopus 로고
    • Augmentation of tumor angiogenesis by a Myc-activated microRNA cluster
    • Dews M, Homayouni A, Yu D, Murphy D, Sevignani C, et al. (2006) Augmentation of tumor angiogenesis by a Myc-activated microRNA cluster. Nat Genet 38: 1060-1065.
    • (2006) Nat Genet , vol.38 , pp. 1060-1065
    • Dews, M.1    Homayouni, A.2    Yu, D.3    Murphy, D.4    Sevignani, C.5
  • 40
    • 77953268102 scopus 로고    scopus 로고
    • Roles for dysfunctional sphingolipid metabolism in Alzheimer's disease neuropathogenesis
    • 878-886
    • Haughey NJ, Bandaru VV, Bae M, Mattson MP, (2010) Roles for dysfunctional sphingolipid metabolism in Alzheimer's disease neuropathogenesis. Biochim Biophys Acta 1801 878-886: 878-886.
    • (2010) Biochim Biophys Acta , vol.1801 , pp. 878-886
    • Haughey, N.J.1    Bandaru, V.V.2    Bae, M.3    Mattson, M.P.4
  • 41
    • 0034488193 scopus 로고    scopus 로고
    • Pivotal role for acidic sphingomyelinase in cerebral ischemia-induced ceramide and cytokine production, and neuronal apoptosis
    • Yu ZF, Nikolova-Karakashian M, Zhou D, Cheng G, Schuchman EH, et al. (2000) Pivotal role for acidic sphingomyelinase in cerebral ischemia-induced ceramide and cytokine production, and neuronal apoptosis. J Mol Neurosci 15: 85-97.
    • (2000) J Mol Neurosci , vol.15 , pp. 85-97
    • Yu, Z.F.1    Nikolova-Karakashian, M.2    Zhou, D.3    Cheng, G.4    Schuchman, E.H.5
  • 42
    • 0030066567 scopus 로고    scopus 로고
    • Ceramide induces apoptosis in cultured mesencephalic neurons
    • Brugg B, Michel PP, Agid Y, Ruberg M, (1996) Ceramide induces apoptosis in cultured mesencephalic neurons. J Neurochem 66: 733-739.
    • (1996) J Neurochem , vol.66 , pp. 733-739
    • Brugg, B.1    Michel, P.P.2    Agid, Y.3    Ruberg, M.4
  • 43
    • 31544472673 scopus 로고    scopus 로고
    • Association of the calcyon gene (DRD1IP) with attention deficit/hyperactivity disorder
    • Laurin N, Misener VL, Crosbie J, Ickowicz A, Pathare T, et al. (2005) Association of the calcyon gene (DRD1IP) with attention deficit/hyperactivity disorder. Mol Psychiatry 10: 1117-1125.
    • (2005) Mol Psychiatry , vol.10 , pp. 1117-1125
    • Laurin, N.1    Misener, V.L.2    Crosbie, J.3    Ickowicz, A.4    Pathare, T.5
  • 44
    • 41149168533 scopus 로고    scopus 로고
    • Up-regulation of calcyon results in locomotor hyperactivity and reduced anxiety in mice
    • Trantham-Davidson H, Vazdarjanova A, Dai R, Terry A, Bergson C, (2008) Up-regulation of calcyon results in locomotor hyperactivity and reduced anxiety in mice. Behav Brain Res 189: 244-249.
    • (2008) Behav Brain Res , vol.189 , pp. 244-249
    • Trantham-Davidson, H.1    Vazdarjanova, A.2    Dai, R.3    Terry, A.4    Bergson, C.5
  • 45
    • 33746559149 scopus 로고    scopus 로고
    • Dopamine receptor signaling molecules are altered in elderly schizophrenic cortex
    • Baracskay KL, Haroutunian V, Meador-Woodruff JH, (2006) Dopamine receptor signaling molecules are altered in elderly schizophrenic cortex. Synapse 60: 271-279.
    • (2006) Synapse , vol.60 , pp. 271-279
    • Baracskay, K.L.1    Haroutunian, V.2    Meador-Woodruff, J.H.3
  • 46
    • 26444566804 scopus 로고    scopus 로고
    • Dopaminergic abnormalities in select thalamic nuclei in schizophrenia: involvement of the intracellular signal integrating proteins calcyon and spinophilin
    • Clinton SM, Ibrahim HM, Frey KA, Davis KL, Haroutunian V, et al. (2005) Dopaminergic abnormalities in select thalamic nuclei in schizophrenia: involvement of the intracellular signal integrating proteins calcyon and spinophilin. Am J Psychiatry 162: 1859-1871.
    • (2005) Am J Psychiatry , vol.162 , pp. 1859-1871
    • Clinton, S.M.1    Ibrahim, H.M.2    Frey, K.A.3    Davis, K.L.4    Haroutunian, V.5
  • 47
    • 28444445972 scopus 로고    scopus 로고
    • Glyoxalase 1 and glutathione reductase 1 regulate anxiety in mice
    • Hovatta I, Tennant RS, Helton R, Marr RA, Singer O, et al. (2005) Glyoxalase 1 and glutathione reductase 1 regulate anxiety in mice. Nature 438: 662-666.
    • (2005) Nature , vol.438 , pp. 662-666
    • Hovatta, I.1    Tennant, R.S.2    Helton, R.3    Marr, R.A.4    Singer, O.5
  • 51
    • 78651293534 scopus 로고    scopus 로고
    • miRBase: integrating microRNA annotation and deep-sequencing data
    • Kozomara A, Griffiths-Jones S, (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39: D152-157.
    • (2011) Nucleic Acids Res , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 52
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 53
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK, (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 54
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    Bolstad, B.4    Dettling, M.5
  • 55
    • 1342288026 scopus 로고    scopus 로고
    • affy--analysis of Affymetrix GeneChip data at the probe level
    • Gautier L, Cope L, Bolstad BM, Irizarry RA, (2004) affy--analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20: 307-315.
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 56
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.D.4    Antonellis, K.J.5
  • 57
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Smyth GK, (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol: 3.
    • (2004) Stat Appl Genet Mol Biol: , vol.3
    • Smyth, G.K.1
  • 59
    • 77954504259 scopus 로고    scopus 로고
    • Comparison and integration of target prediction algorithms for microRNA studies
    • doi:
    • Zhang Y, Verbeek FJ, (2010) Comparison and integration of target prediction algorithms for microRNA studies. J Integr Bioinform 7 doi:10.2390/biecoll-jib-2010-2127.
    • (2010) J Integr Bioinform , vol.7
    • Zhang, Y.1    Verbeek, F.J.2
  • 60
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP, (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 62
    • 33748587841 scopus 로고    scopus 로고
    • A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes
    • Miranda KC, Huynh T, Tay Y, Ang YS, Tam WL, et al. (2006) A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell 126: 1203-1217.
    • (2006) Cell , vol.126 , pp. 1203-1217
    • Miranda, K.C.1    Huynh, T.2    Tay, Y.3    Ang, Y.S.4    Tam, W.L.5
  • 63
    • 4644237189 scopus 로고    scopus 로고
    • Fast and effective prediction of microRNA/target duplexes
    • Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R, (2004) Fast and effective prediction of microRNA/target duplexes. Rna 10: 1507-1517.
    • (2004) Rna , vol.10 , pp. 1507-1517
    • Rehmsmeier, M.1    Steffen, P.2    Hochsmann, M.3    Giegerich, R.4
  • 64
    • 44149083586 scopus 로고    scopus 로고
    • miRDB: a microRNA target prediction and functional annotation database with a wiki interface
    • Wang X, (2008) miRDB: a microRNA target prediction and functional annotation database with a wiki interface. Rna 14: 1012-1017.
    • (2008) Rna , vol.14 , pp. 1012-1017
    • Wang, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.