Analysis of proteins in aerenchymatous seminal roots of wheat grown in hypoxic soils under waterlogged conditions

Protein and Peptide Letters

Volumn 18, Issue 9, 2011, Pages 912-924

  Haque, Md Emdadul ^a   Kawaguchi, Kentaro ^a   Komatsu, Setsuko ^a  

^a NATIONAL INSTITUTE OF CROP SCIENCE   (Japan)

Author keywords

Aerenchymatous seminal roots; Hypoxic soils; Proteome; Waterlogged conditions; Wheat

Indexed keywords

OXYGEN; VEGETABLE PROTEIN; WATER;

ARTICLE; CHEMISTRY; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PLANT ROOT; SEEDLING; SOIL; WHEAT;

GENE EXPRESSION REGULATION, PLANT; OXYGEN; PLANT PROTEINS; PLANT ROOTS; SEEDLING; SOIL; TRITICUM; WATER;

TRITICUM AESTIVUM;

EID: 79959426399     PISSN: 09298665     EISSN: None     Source Type: Journal    
DOI: 10.2174/092986611796011455     Document Type: Article

References (51)

1. Armstrong, A.C. The effect of drainage treatments on cereal yields: results from experiments on clay lands. J. Agr. Sci., 1978, 91, 229-235.
2. Jackson, M.B.; Ishizawa, K.; Ito, O. Evolution and mechanisms of plant tolerance to flooding stress. Ann. Bot., 2009, 103, 137-142.
3. Sairam, R.K.; Kumutha, D.; Ezhilmathi, K.; Deshmukh, P.S.; Srivastava, G.C. Physiology and biochemistry of waterlogging tolerance in plants. Biologia Plant., 2008, 52, 401-412.
4. Gibbs, J.; Greenway, H. Mechanism of anoxia tolerance in plants. I. Growth, survival and anaerobic catabolism. Func. Plant Biol., 2003, 30, 1-47. (Pubitemid 36224773)
5. Sachs, M.M.; Feeling, M.; Okimoto, R. The anaerobic proteins of maize. Cell, 1980, 20, 761-767. (Pubitemid 10078555)
6. Fukao, T.; Bailey-Serres, J. Plant responses to hypoxia. Is survival a balancing act? Trends Plant Sci., 2004, 9, 1403-1409.
7. Evans, D.E. Aerenchyma formation. New Phytol., 2003, 161, 35-49. (Pubitemid 38050990)
8. Haque, M.E.; Abe, F.; Kawaguchi, K. Formation and extension of lysigenous aerenchyma in seminal root cortex of spring wheat (Triticum aestivum cv. Bobwhite line SH 98 26) seedlings under different strengths of waterlogging. Plant Root, 2010, 4, 31-39.
9. Drew, M.C.; He, C.J.; Morgan, P.W. Programmed cell death and aerenchyma formation in roots. Trends Plant Sci., 2000, 5, 123-127. (Pubitemid 30146992)
10. Bouranis, D.L.; Chorianopoulou, S.N.; Siyiannis, V.F.; Protonotarios, V.E.; Hawkesford, M.J. Lysigenous aerenchyma development in roots -Triggers and cross-talks for a cell elimination program. Int. J. Plant Dev. Biol., 2007, 1, 127-140.
11. Licausi, F.; Perata, P. Low oxygen signaling and tolerance in plants. Adv. Bot. Res., 2009, 50, 139-198.
12. Dennis, E.S.; Dolferus, R.; Ellis, M.; Rahman, M.; Wu, Y.; Hoeren, F.U.; Grover, A.; Ismond, K.P.; Good, A.G.; Peacock, W.J. Molecular strategies for improving waterlogging tolerance in plants. J. Exp. Bot., 2000, 51, 89-97. (Pubitemid 30065415)
13. Xu, K.; Xu, X.; Fukao, T.; Canlas, P.; Maghirang-Rodriguez, R.; Heuer, S.; Ismail, A.M.; Bailey-Serres, J.; Ronald, P.C.; Mackill, D.J. Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature, 2006, 442, 705-708. (Pubitemid 44215327)
14. Komatsu, S.; Sugimoto, T.; Hoshino, T.; Nanjo, Y.; Furukawa, K. Identification of flooding stress responsible cascades in root and hypocotyl of soybean using proteome analysis. Amino Acids, 2010, 38, 729-738.
15. Chang, W.W.P.; Huang, L.; Shen, M.; Webster, C.; Burlingame, A.M.; Roberts, J.K.M. Patterns of protein synthesis and tolerance of anoxia in root tips of maize seedlings acclimated to a lowoxygen environment, and identification of proteins by mass spectrometry. Plant Physiol., 2000, 122, 295-318.
16. Huang, S.; Greenway, H.; Colmer, T.D.; Millar, A.H. Protein synthesis by rice coleoptiles during prolonged anoxia: implications for glycolysis, growth and energy utilization. Ann. Bot., 2005, 96, 703-715. (Pubitemid 41298059)
17. Ahsan, N.; Lee, D.-G.; Lee, S-H.; Lee, K.-W.; Bahk, J.D.; Lee, B.-H. A proteomic screen and identification of waterlogging-regulated proteins in tomato roots. Plant Soil., 2007, 295, 37-51. (Pubitemid 46944699)
18. Oyanagi, A. Relationship of growth variability, with ground level and soil water content in a large paddy field in Inashiki-city, Ibaraki-prefecture in 2007-Wet injury of wheat. Jpn. J .Crop Sci. (Japanese), 2008, 77, 511-515.
19. Kong, F.-J.; Oyanagi, A.; Komatsu, S. Cell wall proteome of wheat roots under flooding stress using gel-based and LC MS/MS-based proteomics approaches. Biochim. Biophys. Acta, 2010, 1804, 124-136.
20. Bradford, M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of proteindye binding. Anal. Biochem., 1976, 72, 248-254.
21. O'Farrell, P.H. High resolution two-dimensional electrophoresis of protein. J. Biol. Chem., 1975, 250, 4007-4021.
22. Nouri, M.-Z.; Komatsu, S. Comparative analysis of soybean plasma membrane proteins under osmotic stress using gel-based and LC MS/MS-based proteomics approaches. Proteomics, 2010, 10, 1930-1945.
23. Memon, A.R. The role of ADP-ribosylation factor and SAR1 in vesicular trafficking in plants. Biochim. Biophys. Acta, 2004, 1664, 9-30. (Pubitemid 38829313)
24. Yoo, C.M.; Wen, J.; Motes, C.M.; Sparks, J.A.; Blancaflor, E.A. class I ADP-ribosylation factor GTPase-activating protein is critical for maintaining directional root hair growth in Arabidopsis. Plant Physiol, 2008, 147, 1659-1674. (Pubitemid 352844211)
25. Lanubile, R.; Piro, G.; Dalessandro, G. Effect of Brefeldin A on the synthesis and transport of cell wall polysaccharides and proteins in pea root seedlings. J. Exp. Bot., 1997, 48, 1925-1933. (Pubitemid 27523440)
26. Fan, L.; Zheng, S.; Wang, X. Antisense suppression of phospholipase Dα retards abscisic acid- and ethylene-promoted senescence of postharvest Arabidopsis leaves. Plant Cell, 1997, 9, 2183-2196.
27. Lee, S.H.; Chae, T.K.; Kim, S.H.; Shin, S.H.; Cho, B.H.; Kang, B.G.; Lee, W.S. Ethylene-mediated phospholipid catabolism pathway in glucose-starved carrot suspension cells. Plant Physiol., 1998, 116, 223-229. (Pubitemid 28503857)
28. Jacob, T.; Ritchie, S.; Assmann, S.M.; Gilroy, S. Abscisic acid signal transduction in guard cells is mediated by phospholipase D activity. Proc. Natl. Acad. Sci. USA, 1999, 96, 12192-12197. (Pubitemid 29502880)
29. Perez-Mansilla, B.; Ha, V.L.; Justin, N.; Wilkins, A.J.; Carpenter, C.L.; Thomas GMH. The differential regulation of phosphatidylinositol 4-phosphate 5-kinases and phospholipase D1 by ADPribosylation factors 1 and 6. Biochim. Biophys. Acta, 2006, 1761, 1429-1442. (Pubitemid 44822666)
30. Nandi, D.; Tahiliani, P.; Kumar, A.; Chandu, D. The ubiquitinproteasome system. J. Biosci., 2006, 31, 137-155.
31. Mitsuya, Y.; Takahashia, Y.; Berbericha, T.; Miyazakia, A.; Matsumura, H.; Takahashi, H.; Terauchi, R.; Kusano, T. Spermine signaling plays a significant role in the defense response of Arabidopsis thaliana to cucumber mosaic virus. J. Plant Physiol., 2009, 166, 626-643.
32. Hiraga, S.; Sasaki, K.; Ito, H.; Ohashi, Y. A large family of class III plant peroxidases. Plant Cell Physiol., 2001, 42, 462-468. (Pubitemid 32526170)
33. Erdmann, B.; Wiedenroth, E.M. Changes in the root system of wheat seedlings following root anaerobiosis. II. Morphology and anatomy of evolution forms. Ann. Bot., 1986, 58, 607-616.
34. Vinogradov, S.N.; Walz, D.A.; Pohajdak, B.; Moens, L.; Kapp, O.H.; Suzuki, T.; Trotman, C.N. Adventitious variability? The amino acid sequences of nonvertebrate globins. Comp. Biochem. Physiol., 1993, 106, 1-26. (Pubitemid 23225864)
35. Weber, R.E.; Vinogradov S.N. Nonvertebrate hemoglobins: functions and molecular adaptations. Physiol. Rev., 2001, 81, 569-628. (Pubitemid 32267074)
36. Dordas, C. Nonsymbiotic hemoglobins and stress tolerance in plants. Plant Sci., 2009, 176, 433-440.
37. Igamberdiev, A.U.; Baron, K.; Manac'h-Little, N.; Stoimenova, M.; Hill, R. The haemoglobin/nitric oxide cycle: Involvement in flooding stress and effects on hormone signalling. Ann. Bot., 2005, 96, 557-564. (Pubitemid 41298048)
38. Sowa, A.; Duff, S.M.G.; Guy, P.A.; Hill, R.D. Altering hemoglobin levels changes energy status in maize cells under hypoxia. Proc. Natl. Acad. Sci. USA, 1998, 95, 10317-10321. (Pubitemid 28415339)
39. Dordas, C.; Rivoal, J.; Hill, R.D. Plant haemoglobins, nitric oxide and hypoxic stress. Ann. Bot., 2003, 9, 173-178.
40. Molina, A.; Görlach, J.; Volrath, S.; Ryals, J. Wheat genes encoding two types of PR-1 proteins are pathogen inducible, but do not respond to activators of systemic acquired resistance. Mol. Plant Microbe Interact., 1999, 12, 53-58. (Pubitemid 29015138)
41. Stevens, C.; Titarenko, E.; Hargreaves, J.A.; Gurr, S.J. Defencerelated gene activation during an incompatible interaction between Stagonospora (Septoria) nodorum and barley (Hordeum vulgare L.) coleoptile cells. Plant Mol. Biol., 1996, 31, 741-749. (Pubitemid 26329922)
42. Casacuberta, J.M.; Puigdomènech, P.; San Segundo, B. A gene coding for a basic pathogenesis-related (PR-like) protein from Zea mays. Molecular cloning and induction by a fungus (Fusarium moniliforme) in germinating maize seeds. Plant Mol. Biol., 1991, 6, 527-536.
43. Ryals, J.A.; Neuenschwander, U.H.; Willits, M.G.; Molina, A.; Steiner, H.Y.; Hunt, M.D. Systemic acquired resistance. Plant Cell, 1996, 8, 1809-1819. (Pubitemid 27012406)
44. Hashimoto, M.; Kiseleva, L.; Sawa, S.; Furukawa, T.; Komatsu, S.; Koshiba, T. A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway. Plant Cell Physiol., 2004, 45, 550-559. (Pubitemid 38791238)
45. Qu, Z.L.; Zhong, N.Q.; Wang, H.Y.; Chen, A.P.; Jian, G.L.; Xia, G.X. Ectopic expression of the cotton non-symbiotic hemoglobin gene GhHb1 triggers defense responses and increases disease tolerance in Arabidopsis. Plant Cell Physiol., 2006, 47, 1058-1068.
46. Seregelyes, C.; Igamberdiev, A.U.; Maassen, A.; Hennig, J.; Dudits, D.; Hill, R.D. NO degradation by alfalfa class 1 hemoglobin (Mhb 1): a possible link to PR-1a gene expression in Mhb1-overproducing tobacco plants. FEBS Lett ., 2004, 571, 61-66. (Pubitemid 38992924)
47. Yan, S.P.; Zhang, Q.Y.; Tang, Z.C.; Su, W.A.; Sun W.N. Comparative proteomic analysis provides new insight into chilling stress response in rice, Mol. Cell. Proteomics, 2006, 5, 484-496.
48. Memelink, J.; Linthorst, H.J.M.; Schilperoort, R.A.; Hoge, J.H.C. Tobacco genes encoding acidic and basic isoforms of pathogenesisrelated proteins display different expression patterns, Plant Mol. Biol., 1990, 14, 119-126.
49. Bucher, M.; Kuhlemeier, C. Long-term anoxia tolerance: Multilevel regulation of gene expression in the amphibious plant Acorus calamus L. Plant Physiol., 1993, 103, 441-448. (Pubitemid 2005271)
50. Patnaik, D.; Khurana, P. Germins and germin like proteins: an overview. Ind. J. Exp. Biol., 2001, 39,191-200.
51. Schweizer,, P.; Christoffel, A.; Dudler, R. Transient expression of members of the germin-like gene family in epidermal cells of wheat confers disease resistance. Plant J., 1999, 20, 541-552.